Wall clock time and date at job start Tue Mar 31 2020 22:49:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08996 * 110.77889 * 2 1 4 4 C 1.54319 * 110.71847 * 236.75128 * 2 1 3 5 5 N 1.47028 * 107.26947 * 219.44394 * 4 2 1 6 6 C 1.36932 * 125.64498 * 178.99120 * 5 4 2 7 7 H 1.08005 * 120.00391 * 0.02562 * 6 5 4 8 8 C 1.38819 * 119.99874 * 180.02562 * 6 5 4 9 9 N 1.31617 * 119.99797 * 359.97438 * 8 6 5 10 10 Si 1.86795 * 119.99934 * 180.02562 * 8 6 5 11 11 H 1.48497 * 109.47564 * 59.99747 * 10 8 6 12 12 H 1.48504 * 109.46965 * 180.02562 * 10 8 6 13 13 H 1.48501 * 109.47440 * 299.99428 * 10 8 6 14 14 C 1.47419 * 108.70371 * 358.94679 * 5 4 2 15 15 C 1.54912 * 104.83391 * 24.12534 * 14 5 4 16 16 H 1.08995 * 111.03512 * 81.08074 * 15 14 5 17 17 N 1.46498 * 111.00363 * 204.91815 * 15 14 5 18 18 C 1.34777 * 119.99828 * 266.91713 * 17 15 14 19 19 O 1.21283 * 120.00222 * 0.28168 * 18 17 15 20 20 C 1.50703 * 120.00290 * 180.27728 * 18 17 15 21 21 C 1.50701 * 109.47355 * 180.02562 * 20 18 17 22 22 C 1.39358 * 119.46118 * 90.00401 * 21 20 18 23 23 C 1.36138 * 120.86169 * 179.97438 * 22 21 20 24 24 C 1.40423 * 119.61780 * 359.97438 * 23 22 21 25 25 C 1.40764 * 121.37459 * 180.02562 * 24 23 22 26 26 C 1.36583 * 118.15194 * 179.97438 * 25 24 23 27 27 C 1.39334 * 119.93141 * 359.97438 * 26 25 24 28 28 N 1.31091 * 121.74830 * 0.02562 * 27 26 25 29 29 C 1.33676 * 121.32079 * 359.95885 * 28 27 26 30 30 C 1.36069 * 119.46585 * 269.72530 * 21 20 18 31 31 H 1.09003 * 109.47263 * 296.77022 * 1 2 3 32 32 H 1.09000 * 109.46908 * 56.76956 * 1 2 3 33 33 H 1.09003 * 109.47343 * 176.76659 * 1 2 3 34 34 H 1.08999 * 109.88838 * 338.86726 * 4 2 1 35 35 H 1.09003 * 109.87868 * 100.03224 * 4 2 1 36 36 H 0.97002 * 120.00075 * 180.02562 * 9 8 6 37 37 H 1.09002 * 110.36625 * 265.29189 * 14 5 4 38 38 H 1.08996 * 110.36984 * 142.96546 * 14 5 4 39 39 H 0.97001 * 120.00384 * 87.20160 * 17 15 14 40 40 H 1.08998 * 109.46954 * 300.00581 * 20 18 17 41 41 H 1.09002 * 109.46946 * 59.99717 * 20 18 17 42 42 H 1.07997 * 119.57015 * 359.94830 * 22 21 20 43 43 H 1.08005 * 120.19042 * 179.97438 * 23 22 21 44 44 H 1.08003 * 120.92740 * 359.95934 * 25 24 23 45 45 H 1.07998 * 120.03248 * 180.02562 * 26 25 24 46 46 H 1.07997 * 119.12383 * 180.02562 * 27 26 25 47 47 H 1.07998 * 120.12525 * 0.02562 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9167 1.0191 0.0000 4 6 2.0760 -0.7914 -1.2071 5 7 3.2445 -1.5509 -0.7387 6 6 4.0044 -2.3970 -1.5014 7 1 3.7618 -2.5503 -2.5426 8 6 5.0866 -3.0578 -0.9363 9 7 5.3825 -2.8706 0.3324 10 14 6.1236 -4.2114 -1.9770 11 1 6.7159 -3.4577 -3.1111 12 1 7.2096 -4.7879 -1.1441 13 1 5.2695 -5.3065 -2.5027 14 6 3.4632 -1.2498 0.6878 15 6 2.0789 -0.7954 1.2140 16 1 1.4447 -1.6530 1.4381 17 7 2.2214 0.0698 2.3875 18 6 2.1816 -0.4617 3.6254 19 8 2.0328 -1.6570 3.7677 20 6 2.3219 0.4290 4.8329 21 6 2.2444 -0.4061 6.0850 22 6 3.4126 -0.9384 6.6272 23 6 3.3757 -1.6964 7.7574 24 6 2.1451 -1.9452 8.3863 25 6 2.0641 -2.7232 9.5566 26 6 0.8332 -2.9230 10.1138 27 6 -0.2968 -2.3618 9.5227 28 7 -0.2177 -1.6378 8.4327 29 6 0.9562 -1.4039 7.8376 30 6 1.0357 -0.6234 6.6709 31 1 -0.3634 0.4629 0.9175 32 1 -0.3633 0.5632 -0.8596 33 1 -0.3634 -1.0260 -0.0580 34 1 1.3130 -1.4760 -1.5774 35 1 2.3741 -0.1026 -1.9976 36 1 6.1389 -3.3320 0.7272 37 1 4.1930 -0.4478 0.7986 38 1 3.7959 -2.1425 1.2173 39 1 2.3403 1.0258 2.2739 40 1 3.2835 0.9410 4.7969 41 1 1.5182 1.1654 4.8365 42 1 4.3595 -0.7476 6.1442 43 1 4.2877 -2.1039 8.1681 44 1 2.9507 -3.1505 10.0015 45 1 0.7361 -3.5147 11.0120 46 1 -1.2636 -2.5278 9.9744 47 1 0.1405 -0.2000 6.2399 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001079942096.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:49:08 Heat of formation + Delta-G solvation = 41.813347 kcal Electronic energy + Delta-G solvation = -28488.859173 eV Core-core repulsion = 24636.904565 eV Total energy + Delta-G solvation = -3851.954609 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -40.94762 -39.55680 -37.84776 -36.97152 -33.87719 -33.75041 -32.67281 -32.02341 -30.34777 -30.21474 -28.59484 -27.10127 -25.60090 -24.22748 -23.71030 -22.86217 -22.17586 -20.60429 -20.06227 -19.48052 -17.98688 -17.13739 -17.01747 -16.83496 -16.72647 -15.74636 -15.09467 -14.82174 -14.58846 -14.47405 -14.43487 -13.94153 -13.76400 -13.67369 -13.18308 -13.07852 -12.92416 -12.86524 -12.51568 -12.31572 -12.01246 -11.69653 -11.68055 -11.53899 -11.46144 -11.20303 -11.06769 -10.76277 -10.65021 -10.61507 -10.37177 -9.97403 -9.76148 -9.75251 -9.62396 -9.47932 -8.74582 -8.63292 -8.41305 -8.30810 -6.82260 -5.61712 -3.05248 0.30597 0.70999 1.91399 2.78048 3.00574 3.42352 3.46235 3.48036 3.58214 4.05619 4.13260 4.45532 4.51227 4.53869 4.68401 4.74441 4.90297 4.95598 5.07523 5.16988 5.24969 5.29168 5.33004 5.39110 5.45050 5.46741 5.55007 5.69056 5.77196 5.81788 5.86388 5.98300 5.99924 6.06056 6.17519 6.26788 6.27603 6.39540 6.40547 6.45837 6.50504 6.67828 6.75609 6.83261 6.97881 7.47690 7.63343 7.79659 7.86414 7.96196 8.39491 8.63854 9.23287 9.84605 10.47996 11.41011 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.013451 B = 0.002603 C = 0.002321 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2081.200680 B =10754.411591 C =12060.768272 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.112 4.112 3 H 0.073 0.927 4 C 0.141 3.859 5 N -0.603 5.603 6 C -0.226 4.226 7 H 0.078 0.922 8 C -0.010 4.010 9 N -0.918 5.918 10 Si 0.915 3.085 11 H -0.286 1.286 12 H -0.290 1.290 13 H -0.285 1.285 14 C 0.149 3.851 15 C 0.119 3.881 16 H 0.092 0.908 17 N -0.714 5.714 18 C 0.512 3.488 19 O -0.527 6.527 20 C -0.107 4.107 21 C -0.037 4.037 22 C -0.093 4.093 23 C -0.099 4.099 24 C -0.103 4.103 25 C -0.057 4.057 26 C -0.182 4.182 27 C 0.125 3.875 28 N -0.474 5.474 29 C 0.129 3.871 30 C -0.082 4.082 31 H 0.050 0.950 32 H 0.052 0.948 33 H 0.056 0.944 34 H 0.027 0.973 35 H 0.023 0.977 36 H 0.253 0.747 37 H 0.012 0.988 38 H 0.111 0.889 39 H 0.394 0.606 40 H 0.106 0.894 41 H 0.103 0.897 42 H 0.130 0.870 43 H 0.131 0.869 44 H 0.137 0.863 45 H 0.135 0.865 46 H 0.157 0.843 47 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.168 8.400 17.972 21.454 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.131 4.131 3 H 0.091 0.909 4 C 0.015 3.985 5 N -0.330 5.330 6 C -0.355 4.355 7 H 0.096 0.904 8 C -0.206 4.206 9 N -0.566 5.566 10 Si 0.745 3.255 11 H -0.212 1.212 12 H -0.216 1.216 13 H -0.211 1.211 14 C 0.023 3.977 15 C 0.014 3.986 16 H 0.110 0.890 17 N -0.365 5.365 18 C 0.296 3.704 19 O -0.402 6.402 20 C -0.147 4.147 21 C -0.040 4.040 22 C -0.111 4.111 23 C -0.118 4.118 24 C -0.104 4.104 25 C -0.083 4.083 26 C -0.202 4.202 27 C -0.048 4.048 28 N -0.181 5.181 29 C 0.008 3.992 30 C -0.101 4.101 31 H 0.069 0.931 32 H 0.071 0.929 33 H 0.075 0.925 34 H 0.045 0.955 35 H 0.041 0.959 36 H 0.063 0.937 37 H 0.030 0.970 38 H 0.128 0.872 39 H 0.227 0.773 40 H 0.124 0.876 41 H 0.121 0.879 42 H 0.148 0.852 43 H 0.149 0.851 44 H 0.155 0.845 45 H 0.153 0.847 46 H 0.174 0.826 47 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -8.794 7.786 17.613 21.170 hybrid contribution 1.444 -0.490 -0.279 1.550 sum -7.350 7.297 17.334 20.192 Atomic orbital electron populations 1.21737 0.94999 1.01877 1.00834 1.22430 0.95192 0.99126 0.96365 0.90855 1.21346 0.90273 0.93172 0.93758 1.44389 1.30840 1.50487 1.07261 1.19019 1.06311 1.17266 0.92866 0.90414 1.24817 0.98804 1.00552 0.96398 1.69795 1.29970 1.46023 1.10845 0.86149 0.79758 0.80643 0.78910 1.21226 1.21572 1.21117 1.22216 0.89391 1.01043 0.85013 1.22693 1.00972 0.92418 0.82498 0.89027 1.45857 1.74042 1.10905 1.05672 1.20287 0.77045 0.88951 0.84068 1.90766 1.47975 1.15440 1.86035 1.20775 1.05387 0.97834 0.90703 1.19058 0.93127 0.97143 0.94657 1.20851 0.98343 0.96610 0.95300 1.20918 0.96370 0.98441 0.96028 1.18848 0.94848 0.99903 0.96852 1.21476 0.98448 0.94840 0.93491 1.21844 0.93650 1.02569 1.02130 1.22918 0.98737 0.92032 0.91105 1.68012 1.26560 1.14402 1.09164 1.18789 0.88109 0.96899 0.95384 1.20556 0.97665 0.98052 0.93829 0.93117 0.92921 0.92510 0.95508 0.95911 0.93670 0.96972 0.87156 0.77253 0.87603 0.87889 0.85221 0.85136 0.84520 0.84728 0.82618 0.84904 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.89 9.16 37.16 0.34 -1.55 16 2 C -0.11 -1.87 3.20 -88.78 -0.28 -2.15 16 3 H 0.07 1.11 8.00 -51.93 -0.42 0.69 16 4 C 0.14 2.93 6.84 -3.06 -0.02 2.90 16 5 N -0.60 -15.70 3.39 -170.07 -0.58 -16.27 16 6 C -0.23 -6.42 10.27 -15.06 -0.15 -6.57 16 7 H 0.08 2.11 7.83 -52.48 -0.41 1.70 16 8 C -0.01 -0.28 5.49 -17.43 -0.10 -0.38 16 9 N -0.92 -27.48 10.09 55.49 0.56 -26.92 16 10 Si 0.92 22.47 29.55 -169.99 -5.02 17.44 16 11 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 12 H -0.29 -7.17 7.11 56.52 0.40 -6.76 16 13 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 14 C 0.15 3.70 5.58 -2.53 -0.01 3.68 16 15 C 0.12 2.31 2.87 -65.78 -0.19 2.12 16 16 H 0.09 2.01 7.44 -51.93 -0.39 1.62 16 17 N -0.71 -10.93 5.20 -51.73 -0.27 -11.20 16 18 C 0.51 8.22 7.82 -10.98 -0.09 8.13 16 19 O -0.53 -11.20 15.67 5.55 0.09 -11.11 16 20 C -0.11 -1.19 5.80 -29.03 -0.17 -1.35 16 21 C -0.04 -0.48 4.34 -104.98 -0.46 -0.94 16 22 C -0.09 -1.16 9.59 -39.92 -0.38 -1.54 16 23 C -0.10 -1.15 9.77 -39.51 -0.39 -1.54 16 24 C -0.10 -1.28 5.74 -106.81 -0.61 -1.89 16 25 C -0.06 -0.55 9.90 -39.22 -0.39 -0.94 16 26 C -0.18 -1.58 10.03 -39.77 -0.40 -1.98 16 27 C 0.12 1.27 11.15 -17.46 -0.19 1.07 16 28 N -0.47 -6.38 10.34 -10.97 -0.11 -6.50 16 29 C 0.13 1.81 6.60 -84.86 -0.56 1.25 16 30 C -0.08 -1.12 9.58 -39.47 -0.38 -1.50 16 31 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.06 0.84 8.06 -51.93 -0.42 0.42 16 34 H 0.03 0.56 7.76 -51.93 -0.40 0.15 16 35 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 36 H 0.25 7.38 8.31 -40.82 -0.34 7.04 16 37 H 0.01 0.32 8.14 -51.93 -0.42 -0.10 16 38 H 0.11 3.23 5.87 -51.93 -0.30 2.93 16 39 H 0.39 4.60 8.57 -40.82 -0.35 4.25 16 40 H 0.11 0.93 8.08 -51.93 -0.42 0.51 16 41 H 0.10 0.84 8.07 -51.93 -0.42 0.43 16 42 H 0.13 1.43 8.06 -52.49 -0.42 1.01 16 43 H 0.13 1.16 8.06 -52.48 -0.42 0.74 16 44 H 0.14 0.94 8.06 -52.48 -0.42 0.51 16 45 H 0.13 0.73 8.06 -52.49 -0.42 0.30 16 46 H 0.16 1.06 8.06 -52.49 -0.42 0.64 16 47 H 0.13 1.66 8.06 -52.49 -0.42 1.24 16 LS Contribution 388.20 15.07 5.85 5.85 Total: -1.00 -36.24 388.20 -10.81 -47.05 By element: Atomic # 1 Polarization: 11.71 SS G_CDS: -6.89 Total: 4.81 kcal Atomic # 6 Polarization: 1.26 SS G_CDS: -4.43 Total: -3.17 kcal Atomic # 7 Polarization: -60.49 SS G_CDS: -0.40 Total: -60.89 kcal Atomic # 8 Polarization: -11.20 SS G_CDS: 0.09 Total: -11.11 kcal Atomic # 14 Polarization: 22.47 SS G_CDS: -5.02 Total: 17.44 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -36.24 -10.81 -47.05 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001079942096.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.864 kcal (2) G-P(sol) polarization free energy of solvation -36.244 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.620 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.807 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.051 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.813 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds