Wall clock time and date at job start Tue Mar 31 2020 22:49:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08996 * 110.77889 * 2 1 4 4 C 1.54319 * 110.71847 * 236.75128 * 2 1 3 5 5 N 1.47028 * 107.26947 * 219.44394 * 4 2 1 6 6 C 1.36932 * 125.64498 * 178.99120 * 5 4 2 7 7 H 1.08005 * 120.00391 * 0.02562 * 6 5 4 8 8 C 1.38819 * 119.99874 * 180.02562 * 6 5 4 9 9 N 1.31617 * 119.99797 * 359.97438 * 8 6 5 10 10 Si 1.86795 * 119.99934 * 180.02562 * 8 6 5 11 11 H 1.48497 * 109.47564 * 59.99747 * 10 8 6 12 12 H 1.48504 * 109.46965 * 180.02562 * 10 8 6 13 13 H 1.48501 * 109.47440 * 299.99428 * 10 8 6 14 14 C 1.47419 * 108.70371 * 358.94679 * 5 4 2 15 15 C 1.54912 * 104.83391 * 24.12534 * 14 5 4 16 16 H 1.08995 * 111.03512 * 81.08074 * 15 14 5 17 17 N 1.46498 * 111.00363 * 204.91815 * 15 14 5 18 18 C 1.34777 * 119.99828 * 266.91713 * 17 15 14 19 19 O 1.21283 * 120.00222 * 0.28168 * 18 17 15 20 20 C 1.50703 * 120.00290 * 180.27728 * 18 17 15 21 21 C 1.50701 * 109.47355 * 180.02562 * 20 18 17 22 22 C 1.39358 * 119.46118 * 90.00401 * 21 20 18 23 23 C 1.36138 * 120.86169 * 179.97438 * 22 21 20 24 24 C 1.40423 * 119.61780 * 359.97438 * 23 22 21 25 25 C 1.40764 * 121.37459 * 180.02562 * 24 23 22 26 26 C 1.36583 * 118.15194 * 179.97438 * 25 24 23 27 27 C 1.39334 * 119.93141 * 359.97438 * 26 25 24 28 28 N 1.31091 * 121.74830 * 0.02562 * 27 26 25 29 29 C 1.33676 * 121.32079 * 359.95885 * 28 27 26 30 30 C 1.36069 * 119.46585 * 269.72530 * 21 20 18 31 31 H 1.09003 * 109.47263 * 296.77022 * 1 2 3 32 32 H 1.09000 * 109.46908 * 56.76956 * 1 2 3 33 33 H 1.09003 * 109.47343 * 176.76659 * 1 2 3 34 34 H 1.08999 * 109.88838 * 338.86726 * 4 2 1 35 35 H 1.09003 * 109.87868 * 100.03224 * 4 2 1 36 36 H 0.97002 * 120.00075 * 180.02562 * 9 8 6 37 37 H 1.09002 * 110.36625 * 265.29189 * 14 5 4 38 38 H 1.08996 * 110.36984 * 142.96546 * 14 5 4 39 39 H 0.97001 * 120.00384 * 87.20160 * 17 15 14 40 40 H 1.08998 * 109.46954 * 300.00581 * 20 18 17 41 41 H 1.09002 * 109.46946 * 59.99717 * 20 18 17 42 42 H 1.07997 * 119.57015 * 359.94830 * 22 21 20 43 43 H 1.08005 * 120.19042 * 179.97438 * 23 22 21 44 44 H 1.08003 * 120.92740 * 359.95934 * 25 24 23 45 45 H 1.07998 * 120.03248 * 180.02562 * 26 25 24 46 46 H 1.07997 * 119.12383 * 180.02562 * 27 26 25 47 47 H 1.07998 * 120.12525 * 0.02562 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9167 1.0191 0.0000 4 6 2.0760 -0.7914 -1.2071 5 7 3.2445 -1.5509 -0.7387 6 6 4.0044 -2.3970 -1.5014 7 1 3.7618 -2.5503 -2.5426 8 6 5.0866 -3.0578 -0.9363 9 7 5.3825 -2.8706 0.3324 10 14 6.1236 -4.2114 -1.9770 11 1 6.7159 -3.4577 -3.1111 12 1 7.2096 -4.7879 -1.1441 13 1 5.2695 -5.3065 -2.5027 14 6 3.4632 -1.2498 0.6878 15 6 2.0789 -0.7954 1.2140 16 1 1.4447 -1.6530 1.4381 17 7 2.2214 0.0698 2.3875 18 6 2.1816 -0.4617 3.6254 19 8 2.0328 -1.6570 3.7677 20 6 2.3219 0.4290 4.8329 21 6 2.2444 -0.4061 6.0850 22 6 3.4126 -0.9384 6.6272 23 6 3.3757 -1.6964 7.7574 24 6 2.1451 -1.9452 8.3863 25 6 2.0641 -2.7232 9.5566 26 6 0.8332 -2.9230 10.1138 27 6 -0.2968 -2.3618 9.5227 28 7 -0.2177 -1.6378 8.4327 29 6 0.9562 -1.4039 7.8376 30 6 1.0357 -0.6234 6.6709 31 1 -0.3634 0.4629 0.9175 32 1 -0.3633 0.5632 -0.8596 33 1 -0.3634 -1.0260 -0.0580 34 1 1.3130 -1.4760 -1.5774 35 1 2.3741 -0.1026 -1.9976 36 1 6.1389 -3.3320 0.7272 37 1 4.1930 -0.4478 0.7986 38 1 3.7959 -2.1425 1.2173 39 1 2.3403 1.0258 2.2739 40 1 3.2835 0.9410 4.7969 41 1 1.5182 1.1654 4.8365 42 1 4.3595 -0.7476 6.1442 43 1 4.2877 -2.1039 8.1681 44 1 2.9507 -3.1505 10.0015 45 1 0.7361 -3.5147 11.0120 46 1 -1.2636 -2.5278 9.9744 47 1 0.1405 -0.2000 6.2399 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001079942096.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:49:07 Heat of formation + Delta-G solvation = 17.765602 kcal Electronic energy + Delta-G solvation = -28489.901962 eV Core-core repulsion = 24636.904565 eV Total energy + Delta-G solvation = -3852.997397 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -41.81441 -40.89893 -39.28911 -38.05693 -35.60755 -34.61595 -34.29111 -32.95295 -32.15706 -31.07806 -29.95169 -28.47061 -27.32129 -25.40521 -24.96729 -23.90905 -23.07287 -22.24136 -21.57761 -20.92695 -18.93621 -18.82628 -18.09407 -17.90802 -17.81749 -17.18351 -16.90008 -16.09454 -15.63907 -15.53050 -15.42268 -15.32017 -15.02527 -14.86462 -14.44220 -14.39235 -14.19418 -13.93502 -13.90085 -13.79875 -13.37669 -13.05345 -12.98059 -12.82894 -12.60261 -12.57745 -12.42589 -12.28962 -12.23954 -12.01934 -11.84004 -11.64998 -11.49091 -11.40749 -10.86525 -10.76523 -10.44821 -9.93723 -9.63047 -9.19241 -8.90742 -7.77918 -5.24570 -0.52163 -0.14784 1.05039 1.43357 1.47686 1.53904 1.73275 1.88681 2.35499 2.50386 3.15452 3.30962 3.32110 3.62751 3.68168 3.69942 3.74000 3.91661 4.03985 4.04324 4.06701 4.09997 4.14030 4.22811 4.34917 4.54888 4.56930 4.60730 4.63116 4.63781 4.66803 4.87807 4.88576 5.02968 5.03163 5.07662 5.08533 5.15455 5.22675 5.32043 5.41088 5.44326 5.49636 5.52139 5.63092 5.67875 5.81389 5.92148 6.27877 6.68655 6.97033 7.06720 7.40286 7.76022 8.38544 9.22132 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.013451 B = 0.002603 C = 0.002321 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2081.200680 B =10754.411591 C =12060.768272 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.093 4.093 3 H 0.101 0.899 4 C 0.132 3.868 5 N -0.628 5.628 6 C -0.242 4.242 7 H 0.084 0.916 8 C -0.070 4.070 9 N -0.948 5.948 10 Si 0.982 3.018 11 H -0.273 1.273 12 H -0.295 1.295 13 H -0.278 1.278 14 C 0.158 3.842 15 C 0.137 3.863 16 H 0.061 0.939 17 N -0.701 5.701 18 C 0.508 3.492 19 O -0.585 6.585 20 C -0.094 4.094 21 C -0.048 4.048 22 C -0.117 4.117 23 C -0.099 4.099 24 C -0.125 4.125 25 C -0.062 4.062 26 C -0.175 4.175 27 C 0.121 3.879 28 N -0.511 5.511 29 C 0.100 3.900 30 C -0.102 4.102 31 H 0.069 0.931 32 H 0.078 0.922 33 H 0.041 0.959 34 H 0.027 0.973 35 H 0.034 0.966 36 H 0.244 0.756 37 H -0.005 1.005 38 H 0.059 0.941 39 H 0.417 0.583 40 H 0.134 0.866 41 H 0.139 0.861 42 H 0.138 0.862 43 H 0.156 0.844 44 H 0.167 0.833 45 H 0.175 0.825 46 H 0.187 0.813 47 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.913 9.618 18.855 22.966 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.112 4.112 3 H 0.119 0.881 4 C 0.007 3.993 5 N -0.355 5.355 6 C -0.371 4.371 7 H 0.102 0.898 8 C -0.263 4.263 9 N -0.597 5.597 10 Si 0.810 3.190 11 H -0.199 1.199 12 H -0.221 1.221 13 H -0.204 1.204 14 C 0.031 3.969 15 C 0.030 3.970 16 H 0.079 0.921 17 N -0.353 5.353 18 C 0.296 3.704 19 O -0.465 6.465 20 C -0.133 4.133 21 C -0.051 4.051 22 C -0.135 4.135 23 C -0.118 4.118 24 C -0.127 4.127 25 C -0.087 4.087 26 C -0.194 4.194 27 C -0.051 4.051 28 N -0.220 5.220 29 C -0.020 4.020 30 C -0.121 4.121 31 H 0.088 0.912 32 H 0.097 0.903 33 H 0.060 0.940 34 H 0.045 0.955 35 H 0.052 0.948 36 H 0.054 0.946 37 H 0.013 0.987 38 H 0.077 0.923 39 H 0.254 0.746 40 H 0.152 0.848 41 H 0.157 0.843 42 H 0.155 0.845 43 H 0.173 0.827 44 H 0.185 0.815 45 H 0.192 0.808 46 H 0.204 0.796 47 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -9.565 9.076 18.474 22.697 hybrid contribution 1.615 -0.937 -0.470 1.926 sum -7.949 8.139 18.005 21.298 Atomic orbital electron populations 1.21690 0.92218 1.01711 1.03065 1.22375 0.97262 0.99157 0.92429 0.88078 1.21613 0.88592 0.93294 0.95824 1.44708 1.32011 1.50928 1.07814 1.19452 1.06609 1.17507 0.93519 0.89777 1.25719 1.00404 1.02514 0.97624 1.70112 1.30111 1.47016 1.12461 0.85100 0.77849 0.78641 0.77437 1.19880 1.22089 1.20409 1.21879 0.92104 0.98248 0.84675 1.22105 0.97049 0.92969 0.84876 0.92075 1.45660 1.73520 1.11585 1.04486 1.21196 0.75188 0.88767 0.85227 1.90746 1.50508 1.18362 1.86864 1.20805 1.08291 0.97071 0.87143 1.19259 0.93093 0.97540 0.95181 1.21099 0.98679 0.97561 0.96127 1.21265 0.97202 0.97663 0.95633 1.19168 0.94612 1.00749 0.98184 1.21903 1.00254 0.94070 0.92520 1.22278 0.92604 1.01726 1.02839 1.23606 1.00845 0.90606 0.90079 1.68019 1.26689 1.16353 1.10895 1.19080 0.89107 0.97797 0.96050 1.20707 0.97986 0.98932 0.94491 0.91153 0.90328 0.93997 0.95507 0.94831 0.94593 0.98724 0.92319 0.74610 0.84770 0.84320 0.84452 0.82686 0.81517 0.80802 0.79602 0.84934 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.23 9.16 71.98 0.66 -2.57 16 2 C -0.09 -2.94 3.20 -9.60 -0.03 -2.97 16 3 H 0.10 2.69 8.00 -2.39 -0.02 2.67 16 4 C 0.13 5.40 6.84 86.73 0.59 5.99 16 5 N -0.63 -33.48 3.39 -691.98 -2.35 -35.83 16 6 C -0.24 -14.02 10.27 84.04 0.86 -13.16 16 7 H 0.08 4.61 7.83 -2.91 -0.02 4.59 16 8 C -0.07 -4.14 5.49 84.86 0.47 -3.67 16 9 N -0.95 -59.35 10.09 21.65 0.22 -59.13 16 10 Si 0.98 47.20 29.55 68.60 2.03 49.23 16 11 H -0.27 -12.46 7.11 99.48 0.71 -11.75 16 12 H -0.29 -14.26 7.11 99.48 0.71 -13.55 16 13 H -0.28 -12.94 7.11 99.48 0.71 -12.24 16 14 C 0.16 8.13 5.58 86.86 0.48 8.61 16 15 C 0.14 5.36 2.87 46.39 0.13 5.49 16 16 H 0.06 2.80 7.44 -2.39 -0.02 2.78 16 17 N -0.70 -20.97 5.20 -435.96 -2.27 -23.23 16 18 C 0.51 16.44 7.82 87.66 0.69 17.13 16 19 O -0.59 -26.14 15.67 -3.04 -0.05 -26.19 16 20 C -0.09 -1.98 5.80 29.10 0.17 -1.81 16 21 C -0.05 -1.27 4.34 -20.10 -0.09 -1.35 16 22 C -0.12 -2.95 9.59 22.05 0.21 -2.74 16 23 C -0.10 -2.30 9.77 22.31 0.22 -2.08 16 24 C -0.13 -3.11 5.74 -21.28 -0.12 -3.23 16 25 C -0.06 -1.09 9.90 22.50 0.22 -0.87 16 26 C -0.18 -2.60 10.03 22.15 0.22 -2.38 16 27 C 0.12 2.29 11.15 85.07 0.95 3.24 16 28 N -0.51 -13.87 10.34 -188.63 -1.95 -15.82 16 29 C 0.10 2.88 6.60 40.29 0.27 3.14 16 30 C -0.10 -2.88 9.58 22.34 0.21 -2.67 16 31 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 32 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 33 H 0.04 1.17 8.06 -2.39 -0.02 1.15 16 34 H 0.03 1.10 7.76 -2.39 -0.02 1.08 16 35 H 0.03 1.31 8.14 -2.39 -0.02 1.29 16 36 H 0.24 14.97 8.31 -92.71 -0.77 14.20 16 37 H -0.01 -0.28 8.14 -2.39 -0.02 -0.30 16 38 H 0.06 3.67 5.87 -2.39 -0.01 3.65 16 39 H 0.42 8.72 8.57 -92.71 -0.79 7.92 16 40 H 0.13 2.08 8.08 -2.39 -0.02 2.06 16 41 H 0.14 1.92 8.07 -2.39 -0.02 1.90 16 42 H 0.14 3.08 8.06 -2.91 -0.02 3.06 16 43 H 0.16 2.61 8.06 -2.91 -0.02 2.59 16 44 H 0.17 1.80 8.06 -2.91 -0.02 1.78 16 45 H 0.17 1.15 8.06 -2.91 -0.02 1.12 16 46 H 0.19 2.11 8.06 -2.91 -0.02 2.09 16 47 H 0.13 3.48 8.06 -2.91 -0.02 3.46 16 Total: -1.00 -86.16 388.20 1.94 -84.22 By element: Atomic # 1 Polarization: 22.46 SS G_CDS: 0.19 Total: 22.64 kcal Atomic # 6 Polarization: -2.01 SS G_CDS: 6.12 Total: 4.10 kcal Atomic # 7 Polarization: -127.66 SS G_CDS: -6.35 Total: -134.01 kcal Atomic # 8 Polarization: -26.14 SS G_CDS: -0.05 Total: -26.19 kcal Atomic # 14 Polarization: 47.20 SS G_CDS: 2.03 Total: 49.23 kcal Total: -86.16 1.94 -84.22 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001079942096.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.990 kcal (2) G-P(sol) polarization free energy of solvation -86.160 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.830 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.936 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.224 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.766 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds