Wall clock time and date at job start Tue Mar 31 2020 22:49:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09002 * 110.78404 * 2 1 4 4 C 1.54322 * 110.71875 * 236.76448 * 2 1 3 5 5 N 1.47020 * 107.27396 * 219.44276 * 4 2 1 6 6 C 1.36936 * 125.65258 * 178.98478 * 5 4 2 7 7 H 1.08003 * 120.00138 * 0.02562 * 6 5 4 8 8 C 1.38810 * 120.00081 * 180.02562 * 6 5 4 9 9 N 1.31614 * 120.00181 * 359.97438 * 8 6 5 10 10 Si 1.86808 * 119.99989 * 180.02562 * 8 6 5 11 11 H 1.48509 * 109.46985 * 359.97438 * 10 8 6 12 12 H 1.48502 * 109.46934 * 119.99589 * 10 8 6 13 13 H 1.48494 * 109.47139 * 240.00020 * 10 8 6 14 14 C 1.47422 * 108.70313 * 358.94279 * 5 4 2 15 15 C 1.54917 * 104.83139 * 24.12473 * 14 5 4 16 16 H 1.09003 * 111.03358 * 81.07950 * 15 14 5 17 17 N 1.46494 * 111.00595 * 204.91755 * 15 14 5 18 18 C 1.34780 * 120.00128 * 267.19961 * 17 15 14 19 19 O 1.21281 * 120.00169 * 359.97438 * 18 17 15 20 20 C 1.50705 * 120.00105 * 180.02562 * 18 17 15 21 21 C 1.50700 * 109.47084 * 179.97438 * 20 18 17 22 22 C 1.36250 * 120.26150 * 264.99704 * 21 20 18 23 23 C 1.39330 * 121.02336 * 180.02562 * 22 21 20 24 24 C 1.36202 * 121.08081 * 359.95920 * 23 22 21 25 25 C 1.40332 * 119.51923 * 0.02562 * 24 23 22 26 26 C 1.40435 * 122.08050 * 180.02562 * 25 24 23 27 27 N 1.31232 * 119.88360 * 179.97438 * 26 25 24 28 28 C 1.32611 * 122.78071 * 0.02562 * 27 26 25 29 29 C 1.36175 * 121.88289 * 359.97438 * 28 27 26 30 30 C 1.40188 * 120.25726 * 84.93704 * 21 20 18 31 31 H 1.09003 * 109.47381 * 296.75705 * 1 2 3 32 32 H 1.09003 * 109.47630 * 56.75643 * 1 2 3 33 33 H 1.08999 * 109.47635 * 176.75765 * 1 2 3 34 34 H 1.08999 * 109.88357 * 338.86406 * 4 2 1 35 35 H 1.09005 * 109.88564 * 100.02883 * 4 2 1 36 36 H 0.97007 * 119.99807 * 180.02562 * 9 8 6 37 37 H 1.09000 * 110.36872 * 265.28864 * 14 5 4 38 38 H 1.09004 * 110.37251 * 142.96181 * 14 5 4 39 39 H 0.96996 * 120.00173 * 87.19337 * 17 15 14 40 40 H 1.08998 * 109.47116 * 59.99256 * 20 18 17 41 41 H 1.09004 * 109.46762 * 299.99596 * 20 18 17 42 42 H 1.08000 * 119.48525 * 359.97438 * 22 21 20 43 43 H 1.08002 * 119.45760 * 179.97438 * 23 22 21 44 44 H 1.08005 * 120.23803 * 180.02562 * 24 23 22 45 45 H 1.08006 * 120.05792 * 0.02562 * 26 25 24 46 46 H 1.07996 * 119.06221 * 180.02562 * 28 27 26 47 47 H 1.07994 * 120.66600 * 179.74815 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9167 1.0191 0.0000 4 6 2.0759 -0.7911 -1.2073 5 7 3.2444 -1.5507 -0.7392 6 6 4.0043 -2.3968 -1.5021 7 1 3.7616 -2.5499 -2.5433 8 6 5.0864 -3.0576 -0.9371 9 7 5.3825 -2.8706 0.3316 10 14 6.1234 -4.2112 -1.9780 11 1 5.5862 -4.2469 -3.3621 12 1 7.5272 -3.7275 -2.0038 13 1 6.0808 -5.5765 -1.3957 14 6 3.4632 -1.2499 0.6873 15 6 2.0789 -0.7955 1.2137 16 1 1.4447 -1.6533 1.4377 17 7 2.2214 0.0694 2.3874 18 6 2.1873 -0.4631 3.6251 19 8 2.0382 -1.6583 3.7672 20 6 2.3333 0.4268 4.8326 21 6 2.2604 -0.4091 6.0844 22 6 1.0769 -0.5573 6.7431 23 6 0.9915 -1.3259 7.9020 24 6 2.0875 -1.9536 8.4119 25 6 3.3238 -1.8243 7.7605 26 6 4.4875 -2.4482 8.2387 27 7 5.6213 -2.2986 7.5949 28 6 5.7295 -1.5720 6.4909 29 6 4.6608 -0.9271 5.9465 30 6 3.4094 -1.0414 6.5795 31 1 -0.3634 0.4627 0.9176 32 1 -0.3634 0.5634 -0.8595 33 1 -0.3634 -1.0260 -0.0581 34 1 1.3128 -1.4757 -1.5777 35 1 2.3740 -0.1023 -1.9978 36 1 6.1389 -3.3321 0.7262 37 1 4.1931 -0.4480 0.7983 38 1 3.7959 -2.1428 1.2167 39 1 2.3404 1.0253 2.2739 40 1 1.5299 1.1632 4.8405 41 1 3.2949 0.9385 4.7925 42 1 0.1916 -0.0706 6.3614 43 1 0.0405 -1.4259 8.4041 44 1 2.0057 -2.5464 9.3110 45 1 4.4494 -3.0508 9.1342 46 1 6.6926 -1.4899 6.0092 47 1 4.7721 -0.3372 5.0488 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001079958711.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:49:19 Heat of formation + Delta-G solvation = 42.394221 kcal Electronic energy + Delta-G solvation = -29202.064459 eV Core-core repulsion = 25350.135039 eV Total energy + Delta-G solvation = -3851.929420 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -40.99237 -39.47054 -37.77797 -37.16635 -33.94237 -33.83766 -32.65060 -31.35978 -30.57068 -30.36720 -28.47428 -26.97845 -25.61468 -24.21625 -23.64450 -23.56344 -21.66700 -20.39471 -20.09867 -19.43440 -18.06255 -17.16497 -16.91007 -16.78144 -16.75221 -15.82493 -15.12432 -14.96622 -14.60768 -14.38349 -14.24486 -13.86212 -13.78153 -13.65875 -13.34938 -12.99787 -12.89861 -12.75117 -12.53123 -12.33491 -12.09784 -11.98960 -11.73887 -11.66840 -11.25580 -11.10151 -11.04501 -10.80003 -10.64435 -10.34963 -10.14309 -9.97169 -9.78746 -9.77026 -9.49251 -9.47096 -9.06659 -8.65243 -8.45251 -8.02747 -6.83715 -5.63207 -3.06797 0.33614 0.90968 1.88539 2.94911 2.99038 3.41339 3.46197 3.49563 3.54529 4.10171 4.31634 4.46837 4.50225 4.59513 4.71635 4.84526 4.96080 5.01232 5.06929 5.16906 5.20114 5.28355 5.29890 5.35745 5.42889 5.53632 5.62384 5.74245 5.75905 5.77514 5.94564 5.96982 6.01851 6.02952 6.13793 6.23104 6.28708 6.36242 6.43479 6.47106 6.62682 6.65308 6.78428 6.79984 6.94430 7.44642 7.62900 7.83249 7.92861 7.99863 8.37644 8.59065 9.21926 9.83281 10.46216 11.39698 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.010923 B = 0.003481 C = 0.002783 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2562.831599 B = 8042.652459 C =10059.771165 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.112 4.112 3 H 0.073 0.927 4 C 0.141 3.859 5 N -0.603 5.603 6 C -0.227 4.227 7 H 0.079 0.921 8 C -0.009 4.009 9 N -0.917 5.917 10 Si 0.913 3.087 11 H -0.280 1.280 12 H -0.290 1.290 13 H -0.290 1.290 14 C 0.149 3.851 15 C 0.120 3.880 16 H 0.091 0.909 17 N -0.714 5.714 18 C 0.511 3.489 19 O -0.524 6.524 20 C -0.107 4.107 21 C -0.050 4.050 22 C -0.091 4.091 23 C -0.117 4.117 24 C -0.091 4.091 25 C -0.112 4.112 26 C 0.139 3.861 27 N -0.488 5.488 28 C 0.077 3.923 29 C -0.143 4.143 30 C -0.007 4.007 31 H 0.049 0.951 32 H 0.052 0.948 33 H 0.056 0.944 34 H 0.027 0.973 35 H 0.023 0.977 36 H 0.252 0.748 37 H 0.012 0.988 38 H 0.111 0.889 39 H 0.394 0.606 40 H 0.103 0.897 41 H 0.104 0.896 42 H 0.124 0.876 43 H 0.126 0.874 44 H 0.131 0.869 45 H 0.161 0.839 46 H 0.154 0.846 47 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.173 10.307 15.251 20.566 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.131 4.131 3 H 0.091 0.909 4 C 0.015 3.985 5 N -0.329 5.329 6 C -0.355 4.355 7 H 0.097 0.903 8 C -0.205 4.205 9 N -0.565 5.565 10 Si 0.744 3.256 11 H -0.205 1.205 12 H -0.217 1.217 13 H -0.217 1.217 14 C 0.023 3.977 15 C 0.014 3.986 16 H 0.109 0.891 17 N -0.365 5.365 18 C 0.295 3.705 19 O -0.400 6.400 20 C -0.146 4.146 21 C -0.050 4.050 22 C -0.111 4.111 23 C -0.135 4.135 24 C -0.111 4.111 25 C -0.114 4.114 26 C -0.032 4.032 27 N -0.196 5.196 28 C -0.066 4.066 29 C -0.163 4.163 30 C -0.012 4.012 31 H 0.068 0.932 32 H 0.071 0.929 33 H 0.075 0.925 34 H 0.045 0.955 35 H 0.041 0.959 36 H 0.063 0.937 37 H 0.030 0.970 38 H 0.129 0.871 39 H 0.227 0.773 40 H 0.122 0.878 41 H 0.122 0.878 42 H 0.142 0.858 43 H 0.143 0.857 44 H 0.149 0.851 45 H 0.178 0.822 46 H 0.171 0.829 47 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -8.249 8.931 15.533 19.725 hybrid contribution -0.122 0.368 -1.111 1.177 sum -8.371 9.300 14.421 19.093 Atomic orbital electron populations 1.21732 0.95010 1.01866 1.00807 1.22428 0.95180 0.99130 0.96372 0.90862 1.21344 0.90293 0.93173 0.93736 1.44395 1.30837 1.50489 1.07226 1.19107 1.06271 1.17198 0.92905 0.90306 1.24809 0.98778 1.00512 0.96377 1.69807 1.29907 1.45980 1.10853 0.86017 0.80003 0.80506 0.79071 1.20492 1.21730 1.21679 1.22217 0.89343 1.01046 0.85067 1.22697 1.01016 0.92384 0.82463 0.89053 1.45867 1.74073 1.10876 1.05682 1.20281 0.77191 0.88948 0.84030 1.90767 1.47830 1.15360 1.86000 1.20717 1.05242 0.97876 0.90811 1.19039 0.92940 0.97938 0.95120 1.20785 0.96896 0.98256 0.95135 1.20829 0.98754 0.97584 0.96337 1.20928 0.91570 0.98989 0.99571 1.18985 0.95919 1.00020 0.96447 1.23141 0.86910 0.95188 0.97990 1.67399 1.27921 1.15892 1.08373 1.22182 0.99226 0.93240 0.91945 1.21933 0.92612 1.01293 1.00434 1.17940 0.93780 0.95622 0.93857 0.93168 0.92903 0.92512 0.95513 0.95905 0.93721 0.96999 0.87146 0.77285 0.87849 0.87832 0.85766 0.85651 0.85118 0.82220 0.82888 0.84573 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.83 9.16 37.15 0.34 -1.49 16 2 C -0.11 -1.83 3.19 -88.79 -0.28 -2.11 16 3 H 0.07 1.08 8.00 -51.93 -0.42 0.67 16 4 C 0.14 2.89 6.84 -3.07 -0.02 2.87 16 5 N -0.60 -15.58 3.39 -170.07 -0.58 -16.15 16 6 C -0.23 -6.40 10.27 -15.06 -0.15 -6.56 16 7 H 0.08 2.15 7.83 -52.48 -0.41 1.74 16 8 C -0.01 -0.25 5.49 -17.43 -0.10 -0.35 16 9 N -0.92 -27.49 10.09 55.49 0.56 -26.93 16 10 Si 0.91 22.51 29.55 -169.99 -5.02 17.49 16 11 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 12 H -0.29 -7.17 7.11 56.52 0.40 -6.76 16 13 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 14 C 0.15 3.67 5.58 -2.53 -0.01 3.66 16 15 C 0.12 2.28 2.87 -65.78 -0.19 2.09 16 16 H 0.09 1.97 7.44 -51.93 -0.39 1.59 16 17 N -0.71 -10.70 5.20 -51.73 -0.27 -10.97 16 18 C 0.51 8.05 7.82 -10.98 -0.09 7.97 16 19 O -0.52 -10.99 15.67 5.56 0.09 -10.90 16 20 C -0.11 -1.18 5.28 -29.03 -0.15 -1.33 16 21 C -0.05 -0.64 4.38 -104.61 -0.46 -1.09 16 22 C -0.09 -1.01 9.58 -39.89 -0.38 -1.39 16 23 C -0.12 -1.16 9.94 -39.91 -0.40 -1.56 16 24 C -0.09 -0.94 9.81 -39.53 -0.39 -1.32 16 25 C -0.11 -1.45 5.74 -106.86 -0.61 -2.06 16 26 C 0.14 1.75 11.05 -16.98 -0.19 1.56 16 27 N -0.49 -7.16 10.30 -13.15 -0.14 -7.30 16 28 C 0.08 1.11 11.07 -17.96 -0.20 0.91 16 29 C -0.14 -2.07 9.36 -39.39 -0.37 -2.43 16 30 C -0.01 -0.10 5.75 -106.81 -0.61 -0.71 16 31 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.06 0.81 8.06 -51.93 -0.42 0.40 16 34 H 0.03 0.55 7.76 -51.93 -0.40 0.15 16 35 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 36 H 0.25 7.37 8.31 -40.82 -0.34 7.03 16 37 H 0.01 0.31 8.14 -51.93 -0.42 -0.11 16 38 H 0.11 3.23 5.87 -51.93 -0.30 2.92 16 39 H 0.39 4.49 8.57 -40.82 -0.35 4.14 16 40 H 0.10 0.80 8.04 -51.93 -0.42 0.38 16 41 H 0.10 0.97 6.79 -51.93 -0.35 0.62 16 42 H 0.12 1.08 8.05 -52.49 -0.42 0.66 16 43 H 0.13 0.88 8.06 -52.49 -0.42 0.46 16 44 H 0.13 0.93 8.06 -52.48 -0.42 0.51 16 45 H 0.16 1.42 8.06 -52.48 -0.42 0.99 16 46 H 0.15 1.94 8.06 -52.49 -0.42 1.51 16 47 H 0.14 1.83 6.64 -52.49 -0.35 1.48 16 LS Contribution 384.89 15.07 5.80 5.80 Total: -1.00 -36.04 384.89 -10.57 -46.62 By element: Atomic # 1 Polarization: 12.46 SS G_CDS: -6.75 Total: 5.71 kcal Atomic # 6 Polarization: 0.90 SS G_CDS: -4.26 Total: -3.36 kcal Atomic # 7 Polarization: -60.93 SS G_CDS: -0.42 Total: -61.35 kcal Atomic # 8 Polarization: -10.99 SS G_CDS: 0.09 Total: -10.90 kcal Atomic # 14 Polarization: 22.51 SS G_CDS: -5.02 Total: 17.49 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -36.04 -10.57 -46.62 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001079958711.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.009 kcal (2) G-P(sol) polarization free energy of solvation -36.045 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.965 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.570 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.615 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.394 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds