Wall clock time and date at job start Tue Mar 31 2020 22:49:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09002 * 110.78404 * 2 1 4 4 C 1.54322 * 110.71875 * 236.76448 * 2 1 3 5 5 N 1.47020 * 107.27396 * 219.44276 * 4 2 1 6 6 C 1.36936 * 125.65258 * 178.98478 * 5 4 2 7 7 H 1.08003 * 120.00138 * 0.02562 * 6 5 4 8 8 C 1.38810 * 120.00081 * 180.02562 * 6 5 4 9 9 N 1.31614 * 120.00181 * 359.97438 * 8 6 5 10 10 Si 1.86808 * 119.99989 * 180.02562 * 8 6 5 11 11 H 1.48509 * 109.46985 * 359.97438 * 10 8 6 12 12 H 1.48502 * 109.46934 * 119.99589 * 10 8 6 13 13 H 1.48494 * 109.47139 * 240.00020 * 10 8 6 14 14 C 1.47422 * 108.70313 * 358.94279 * 5 4 2 15 15 C 1.54917 * 104.83139 * 24.12473 * 14 5 4 16 16 H 1.09003 * 111.03358 * 81.07950 * 15 14 5 17 17 N 1.46494 * 111.00595 * 204.91755 * 15 14 5 18 18 C 1.34780 * 120.00128 * 267.19961 * 17 15 14 19 19 O 1.21281 * 120.00169 * 359.97438 * 18 17 15 20 20 C 1.50705 * 120.00105 * 180.02562 * 18 17 15 21 21 C 1.50700 * 109.47084 * 179.97438 * 20 18 17 22 22 C 1.36250 * 120.26150 * 264.99704 * 21 20 18 23 23 C 1.39330 * 121.02336 * 180.02562 * 22 21 20 24 24 C 1.36202 * 121.08081 * 359.95920 * 23 22 21 25 25 C 1.40332 * 119.51923 * 0.02562 * 24 23 22 26 26 C 1.40435 * 122.08050 * 180.02562 * 25 24 23 27 27 N 1.31232 * 119.88360 * 179.97438 * 26 25 24 28 28 C 1.32611 * 122.78071 * 0.02562 * 27 26 25 29 29 C 1.36175 * 121.88289 * 359.97438 * 28 27 26 30 30 C 1.40188 * 120.25726 * 84.93704 * 21 20 18 31 31 H 1.09003 * 109.47381 * 296.75705 * 1 2 3 32 32 H 1.09003 * 109.47630 * 56.75643 * 1 2 3 33 33 H 1.08999 * 109.47635 * 176.75765 * 1 2 3 34 34 H 1.08999 * 109.88357 * 338.86406 * 4 2 1 35 35 H 1.09005 * 109.88564 * 100.02883 * 4 2 1 36 36 H 0.97007 * 119.99807 * 180.02562 * 9 8 6 37 37 H 1.09000 * 110.36872 * 265.28864 * 14 5 4 38 38 H 1.09004 * 110.37251 * 142.96181 * 14 5 4 39 39 H 0.96996 * 120.00173 * 87.19337 * 17 15 14 40 40 H 1.08998 * 109.47116 * 59.99256 * 20 18 17 41 41 H 1.09004 * 109.46762 * 299.99596 * 20 18 17 42 42 H 1.08000 * 119.48525 * 359.97438 * 22 21 20 43 43 H 1.08002 * 119.45760 * 179.97438 * 23 22 21 44 44 H 1.08005 * 120.23803 * 180.02562 * 24 23 22 45 45 H 1.08006 * 120.05792 * 0.02562 * 26 25 24 46 46 H 1.07996 * 119.06221 * 180.02562 * 28 27 26 47 47 H 1.07994 * 120.66600 * 179.74815 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9167 1.0191 0.0000 4 6 2.0759 -0.7911 -1.2073 5 7 3.2444 -1.5507 -0.7392 6 6 4.0043 -2.3968 -1.5021 7 1 3.7616 -2.5499 -2.5433 8 6 5.0864 -3.0576 -0.9371 9 7 5.3825 -2.8706 0.3316 10 14 6.1234 -4.2112 -1.9780 11 1 5.5862 -4.2469 -3.3621 12 1 7.5272 -3.7275 -2.0038 13 1 6.0808 -5.5765 -1.3957 14 6 3.4632 -1.2499 0.6873 15 6 2.0789 -0.7955 1.2137 16 1 1.4447 -1.6533 1.4377 17 7 2.2214 0.0694 2.3874 18 6 2.1873 -0.4631 3.6251 19 8 2.0382 -1.6583 3.7672 20 6 2.3333 0.4268 4.8326 21 6 2.2604 -0.4091 6.0844 22 6 1.0769 -0.5573 6.7431 23 6 0.9915 -1.3259 7.9020 24 6 2.0875 -1.9536 8.4119 25 6 3.3238 -1.8243 7.7605 26 6 4.4875 -2.4482 8.2387 27 7 5.6213 -2.2986 7.5949 28 6 5.7295 -1.5720 6.4909 29 6 4.6608 -0.9271 5.9465 30 6 3.4094 -1.0414 6.5795 31 1 -0.3634 0.4627 0.9176 32 1 -0.3634 0.5634 -0.8595 33 1 -0.3634 -1.0260 -0.0581 34 1 1.3128 -1.4757 -1.5777 35 1 2.3740 -0.1023 -1.9978 36 1 6.1389 -3.3321 0.7262 37 1 4.1931 -0.4480 0.7983 38 1 3.7959 -2.1428 1.2167 39 1 2.3404 1.0253 2.2739 40 1 1.5299 1.1632 4.8405 41 1 3.2949 0.9385 4.7925 42 1 0.1916 -0.0706 6.3614 43 1 0.0405 -1.4259 8.4041 44 1 2.0057 -2.5464 9.3110 45 1 4.4494 -3.0508 9.1342 46 1 6.6926 -1.4899 6.0092 47 1 4.7721 -0.3372 5.0488 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001079958711.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:49:18 Heat of formation + Delta-G solvation = 18.505444 kcal Electronic energy + Delta-G solvation = -29203.100354 eV Core-core repulsion = 25350.135039 eV Total energy + Delta-G solvation = -3852.965315 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -41.94660 -40.81471 -39.22831 -38.23225 -35.63093 -34.81758 -34.27164 -32.32614 -32.17042 -31.53138 -29.86485 -28.31712 -27.30635 -25.35074 -25.07988 -24.53867 -22.92122 -21.89222 -21.56994 -20.78450 -18.97741 -18.93275 -18.13119 -17.99354 -17.70780 -17.25807 -16.91416 -16.15365 -15.72419 -15.58145 -15.52373 -15.26782 -15.02127 -14.73305 -14.46670 -14.40126 -14.25461 -14.14550 -13.93766 -13.55469 -13.38385 -13.09337 -13.01930 -12.92133 -12.88318 -12.62919 -12.53730 -12.17621 -12.03316 -11.90623 -11.86496 -11.64783 -11.42354 -11.15181 -10.82986 -10.79798 -10.49086 -9.97873 -9.94986 -8.95439 -8.92361 -7.80233 -5.26676 -0.57792 -0.03253 0.94509 1.41721 1.43755 1.54021 1.71240 2.05161 2.32743 2.48064 3.12609 3.29621 3.43393 3.52405 3.67292 3.71905 3.75899 3.86998 3.94838 4.03250 4.03927 4.09898 4.13973 4.28295 4.36438 4.44467 4.52677 4.54508 4.62000 4.66187 4.75727 4.85731 4.87253 4.88179 5.03481 5.07723 5.10492 5.15008 5.22700 5.30685 5.43937 5.46970 5.48907 5.54749 5.65942 5.68796 5.79678 5.96202 6.25866 6.66910 6.98647 7.04767 7.38595 7.74524 8.36511 9.19971 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.010923 B = 0.003481 C = 0.002783 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2562.831599 B = 8042.652459 C =10059.771165 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.093 4.093 3 H 0.100 0.900 4 C 0.131 3.869 5 N -0.628 5.628 6 C -0.239 4.239 7 H 0.086 0.914 8 C -0.069 4.069 9 N -0.948 5.948 10 Si 0.979 3.021 11 H -0.261 1.261 12 H -0.290 1.290 13 H -0.296 1.296 14 C 0.157 3.843 15 C 0.138 3.862 16 H 0.063 0.937 17 N -0.701 5.701 18 C 0.509 3.491 19 O -0.582 6.582 20 C -0.094 4.094 21 C -0.078 4.078 22 C -0.088 4.088 23 C -0.120 4.120 24 C -0.089 4.089 25 C -0.133 4.133 26 C 0.141 3.859 27 N -0.517 5.517 28 C 0.056 3.944 29 C -0.162 4.162 30 C -0.031 4.031 31 H 0.072 0.928 32 H 0.077 0.923 33 H 0.042 0.958 34 H 0.028 0.972 35 H 0.033 0.967 36 H 0.243 0.757 37 H -0.008 1.008 38 H 0.057 0.943 39 H 0.416 0.584 40 H 0.148 0.852 41 H 0.118 0.882 42 H 0.151 0.849 43 H 0.161 0.839 44 H 0.165 0.835 45 H 0.196 0.804 46 H 0.156 0.844 47 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.032 12.133 15.929 23.360 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.112 4.112 3 H 0.118 0.882 4 C 0.006 3.994 5 N -0.354 5.354 6 C -0.368 4.368 7 H 0.103 0.897 8 C -0.262 4.262 9 N -0.598 5.598 10 Si 0.807 3.193 11 H -0.185 1.185 12 H -0.217 1.217 13 H -0.223 1.223 14 C 0.030 3.970 15 C 0.032 3.968 16 H 0.081 0.919 17 N -0.353 5.353 18 C 0.296 3.704 19 O -0.461 6.461 20 C -0.133 4.133 21 C -0.079 4.079 22 C -0.107 4.107 23 C -0.137 4.137 24 C -0.108 4.108 25 C -0.135 4.135 26 C -0.031 4.031 27 N -0.226 5.226 28 C -0.086 4.086 29 C -0.182 4.182 30 C -0.036 4.036 31 H 0.091 0.909 32 H 0.096 0.904 33 H 0.061 0.939 34 H 0.046 0.954 35 H 0.051 0.949 36 H 0.053 0.947 37 H 0.010 0.990 38 H 0.075 0.925 39 H 0.253 0.747 40 H 0.166 0.834 41 H 0.136 0.864 42 H 0.169 0.831 43 H 0.178 0.822 44 H 0.183 0.817 45 H 0.212 0.788 46 H 0.174 0.826 47 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -11.134 10.832 16.184 22.432 hybrid contribution 0.679 -0.226 -1.283 1.469 sum -10.456 10.606 14.901 21.068 Atomic orbital electron populations 1.21683 0.91990 1.01774 1.03147 1.22372 0.97430 0.99060 0.92326 0.88200 1.21626 0.88572 0.93304 0.95868 1.44710 1.32024 1.50894 1.07766 1.19529 1.06460 1.17276 0.93529 0.89666 1.25688 1.00417 1.02517 0.97532 1.70130 1.30071 1.47049 1.12528 0.84997 0.78152 0.77817 0.78325 1.18499 1.21718 1.22323 1.21874 0.92223 0.98114 0.84748 1.22091 0.96892 0.92993 0.84871 0.91900 1.45676 1.73588 1.11523 1.04535 1.21175 0.75293 0.88762 0.85138 1.90745 1.50342 1.18205 1.86819 1.20733 1.07716 0.97317 0.87554 1.19267 0.93216 0.99201 0.96203 1.21251 0.96991 0.97433 0.95000 1.21308 1.00078 0.96437 0.95918 1.21358 0.90427 0.98762 1.00293 1.19339 0.97310 1.00232 0.96624 1.23771 0.86307 0.94568 0.98443 1.67415 1.29257 1.16949 1.08934 1.22326 0.99676 0.94013 0.92609 1.21999 0.93346 1.02054 1.00758 1.18280 0.94133 0.96479 0.94714 0.90934 0.90385 0.93912 0.95389 0.94895 0.94725 0.98987 0.92503 0.74713 0.83410 0.86429 0.83093 0.82160 0.81712 0.78772 0.82647 0.84856 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.01 9.16 71.98 0.66 -2.35 16 2 C -0.09 -2.85 3.19 -9.61 -0.03 -2.88 16 3 H 0.10 2.59 8.00 -2.39 -0.02 2.57 16 4 C 0.13 5.30 6.84 86.73 0.59 5.89 16 5 N -0.63 -33.27 3.39 -691.98 -2.35 -35.62 16 6 C -0.24 -13.84 10.27 84.03 0.86 -12.98 16 7 H 0.09 4.68 7.83 -2.91 -0.02 4.66 16 8 C -0.07 -4.10 5.49 84.86 0.47 -3.64 16 9 N -0.95 -60.07 10.09 21.65 0.22 -59.85 16 10 Si 0.98 47.64 29.55 68.60 2.03 49.67 16 11 H -0.26 -11.76 7.11 99.48 0.71 -11.05 16 12 H -0.29 -14.01 7.11 99.48 0.71 -13.30 16 13 H -0.30 -14.58 7.11 99.48 0.71 -13.87 16 14 C 0.16 8.09 5.58 86.86 0.48 8.57 16 15 C 0.14 5.30 2.87 46.39 0.13 5.44 16 16 H 0.06 2.81 7.44 -2.39 -0.02 2.79 16 17 N -0.70 -20.39 5.20 -435.95 -2.27 -22.65 16 18 C 0.51 15.90 7.82 87.66 0.69 16.59 16 19 O -0.58 -25.25 15.67 -3.03 -0.05 -25.30 16 20 C -0.09 -1.92 5.28 29.10 0.15 -1.76 16 21 C -0.08 -1.91 4.38 -19.85 -0.09 -1.99 16 22 C -0.09 -1.68 9.58 22.07 0.21 -1.47 16 23 C -0.12 -1.97 9.94 22.06 0.22 -1.75 16 24 C -0.09 -1.61 9.81 22.30 0.22 -1.39 16 25 C -0.13 -3.38 5.74 -21.31 -0.12 -3.50 16 26 C 0.14 3.51 11.05 85.32 0.94 4.45 16 27 N -0.52 -15.90 10.30 -195.53 -2.01 -17.91 16 28 C 0.06 1.75 11.07 84.09 0.93 2.68 16 29 C -0.16 -5.01 9.36 22.39 0.21 -4.80 16 30 C -0.03 -0.89 5.75 -21.28 -0.12 -1.02 16 31 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 32 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 33 H 0.04 1.13 8.06 -2.39 -0.02 1.11 16 34 H 0.03 1.12 7.76 -2.39 -0.02 1.11 16 35 H 0.03 1.27 8.14 -2.38 -0.02 1.25 16 36 H 0.24 15.10 8.31 -92.70 -0.77 14.33 16 37 H -0.01 -0.42 8.14 -2.39 -0.02 -0.44 16 38 H 0.06 3.57 5.87 -2.38 -0.01 3.56 16 39 H 0.42 8.44 8.57 -92.71 -0.79 7.65 16 40 H 0.15 1.66 8.04 -2.39 -0.02 1.64 16 41 H 0.12 2.07 6.79 -2.38 -0.02 2.06 16 42 H 0.15 2.00 8.05 -2.91 -0.02 1.97 16 43 H 0.16 1.49 8.06 -2.91 -0.02 1.47 16 44 H 0.17 1.73 8.06 -2.91 -0.02 1.71 16 45 H 0.20 3.15 8.06 -2.91 -0.02 3.13 16 46 H 0.16 4.45 8.06 -2.91 -0.02 4.43 16 47 H 0.13 3.94 6.64 -2.91 -0.02 3.92 16 Total: -1.00 -86.19 384.89 2.17 -84.02 By element: Atomic # 1 Polarization: 23.35 SS G_CDS: 0.19 Total: 23.55 kcal Atomic # 6 Polarization: -2.33 SS G_CDS: 6.41 Total: 4.08 kcal Atomic # 7 Polarization: -129.61 SS G_CDS: -6.41 Total: -136.02 kcal Atomic # 8 Polarization: -25.25 SS G_CDS: -0.05 Total: -25.30 kcal Atomic # 14 Polarization: 47.64 SS G_CDS: 2.03 Total: 49.67 kcal Total: -86.19 2.17 -84.02 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001079958711.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.521 kcal (2) G-P(sol) polarization free energy of solvation -86.190 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.331 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.174 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.016 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.505 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds