Wall clock time and date at job start Tue Mar 31 2020 22:48:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09004 * 110.91559 * 2 1 4 4 C 1.54904 * 111.00622 * 236.09521 * 2 1 3 5 5 N 1.47423 * 104.83587 * 204.91508 * 4 2 1 6 6 C 1.36932 * 125.65075 * 204.09103 * 5 4 2 7 7 H 1.07998 * 120.00167 * 0.02562 * 6 5 4 8 8 C 1.38808 * 120.00049 * 180.02562 * 6 5 4 9 9 N 1.31616 * 120.00202 * 0.02562 * 8 6 5 10 10 Si 1.86801 * 120.00123 * 180.02562 * 8 6 5 11 11 H 1.48497 * 109.47081 * 60.00109 * 10 8 6 12 12 H 1.48501 * 109.47203 * 180.02562 * 10 8 6 13 13 H 1.48507 * 109.47200 * 300.00204 * 10 8 6 14 14 C 1.47028 * 108.70033 * 24.12624 * 5 4 2 15 15 C 1.54328 * 107.26965 * 358.94193 * 14 5 4 16 16 H 1.09002 * 110.71881 * 96.34695 * 15 14 5 17 17 N 1.46500 * 110.71808 * 219.43911 * 15 14 5 18 18 C 1.34773 * 120.00431 * 273.55126 * 17 15 14 19 19 O 1.21583 * 119.99900 * 359.97438 * 18 17 15 20 20 C 1.47637 * 120.00162 * 179.72279 * 18 17 15 21 21 C 1.39721 * 120.08122 * 0.02562 * 20 18 17 22 22 C 1.37711 * 119.92185 * 179.69404 * 21 20 18 23 23 C 1.39058 * 120.07878 * 0.57621 * 22 21 20 24 24 N 1.39808 * 119.91795 * 179.73854 * 23 22 21 25 25 C 1.36637 * 125.67402 * 179.66674 * 24 23 22 26 26 C 1.34804 * 108.19433 * 179.86699 * 25 24 23 27 27 C 1.40991 * 107.48225 * 0.39697 * 26 25 24 28 28 C 1.34808 * 107.47981 * 359.75377 * 27 26 25 29 29 C 1.39058 * 120.15539 * 359.72184 * 23 22 21 30 30 C 1.37702 * 120.08054 * 359.97438 * 29 23 22 31 31 H 1.08999 * 109.47292 * 296.10056 * 1 2 3 32 32 H 1.09002 * 109.47667 * 56.09994 * 1 2 3 33 33 H 1.08996 * 109.47157 * 176.10441 * 1 2 3 34 34 H 1.08999 * 110.36741 * 86.07444 * 4 2 1 35 35 H 1.09006 * 110.45955 * 323.80427 * 4 2 1 36 36 H 0.97004 * 120.00456 * 179.97438 * 9 8 6 37 37 H 1.09001 * 109.88116 * 239.52386 * 14 5 4 38 38 H 1.09001 * 110.00971 * 118.42972 * 14 5 4 39 39 H 0.97000 * 119.99456 * 93.54688 * 17 15 14 40 40 H 1.08006 * 120.03651 * 359.97438 * 21 20 18 41 41 H 1.08009 * 119.96039 * 180.29590 * 22 21 20 42 42 H 1.08002 * 125.90028 * 0.03923 * 25 24 23 43 43 H 1.07998 * 126.26021 * 180.16912 * 26 25 24 44 44 H 1.08001 * 126.25735 * 179.73065 * 27 26 25 45 45 H 1.08002 * 125.90062 * 179.97438 * 28 27 26 46 46 H 1.07998 * 119.95461 * 180.02562 * 29 23 22 47 47 H 1.08005 * 120.03729 * 180.02562 * 30 29 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9191 1.0182 0.0000 4 6 2.0852 -0.8066 -1.2002 5 7 3.4271 -1.2431 -0.7733 6 6 4.4640 -1.5667 -1.6071 7 1 4.3333 -1.5118 -2.6777 8 6 5.6830 -1.9654 -1.0762 9 7 5.8422 -2.0328 0.2285 10 14 7.0977 -2.4063 -2.2137 11 1 7.4400 -1.2321 -3.0559 12 1 8.2800 -2.7972 -1.4046 13 1 6.6975 -3.5405 -3.0848 14 6 3.4674 -1.2740 0.6961 15 6 2.0861 -0.8078 1.2023 16 1 1.4478 -1.6631 1.4240 17 7 2.2286 0.0497 2.3815 18 6 2.3022 -0.5002 3.6098 19 8 2.2498 -1.7080 3.7392 20 6 2.4519 0.3637 4.7976 21 6 2.5170 1.7516 4.6505 22 6 2.6504 2.5546 5.7612 23 6 2.7323 1.9851 7.0272 24 7 2.8732 2.8033 8.1521 25 6 2.9581 2.3717 9.4457 26 6 3.0889 3.4516 10.2420 27 6 3.0756 4.5926 9.4139 28 6 2.9426 4.1678 8.1414 29 6 2.6741 0.6039 7.1769 30 6 2.5346 -0.2049 6.0712 31 1 -0.3634 0.4521 0.9228 32 1 -0.3634 0.5732 -0.8530 33 1 -0.3633 -1.0252 -0.0698 34 1 2.1559 -0.1721 -2.0836 35 1 1.4524 -1.6704 -1.4042 36 1 6.6939 -2.3118 0.5995 37 1 4.2426 -0.5996 1.0600 38 1 3.6662 -2.2882 1.0425 39 1 2.2700 1.0133 2.2783 40 1 2.4582 2.1944 3.6671 41 1 2.6959 3.6279 5.6486 42 1 2.9287 1.3430 9.7733 43 1 3.1827 3.4443 11.3178 44 1 3.1566 5.6191 9.7395 45 1 2.8983 4.7974 7.2649 46 1 2.7377 0.1650 8.1616 47 1 2.4891 -1.2776 6.1883 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001080063050.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:48:43 Heat of formation + Delta-G solvation = 56.238992 kcal Electronic energy + Delta-G solvation = -28322.586227 eV Core-core repulsion = 24471.257161 eV Total energy + Delta-G solvation = -3851.329066 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.79 seconds Orbital eigenvalues (eV) -42.61839 -41.29235 -39.73667 -38.77368 -35.71511 -34.58269 -34.01529 -32.40129 -32.15916 -30.52933 -29.78957 -29.14385 -27.36684 -25.70050 -24.68874 -24.00860 -22.57494 -21.64586 -21.48079 -20.89248 -20.73042 -19.66232 -18.90850 -18.60266 -17.51406 -16.93195 -16.34641 -16.09689 -15.96807 -15.80960 -15.72078 -15.53239 -15.00609 -14.84222 -14.68666 -14.44790 -14.25922 -14.06472 -13.80944 -13.60043 -13.45864 -13.33879 -13.21718 -13.03958 -12.95376 -12.85918 -12.58071 -12.26592 -12.19303 -12.05062 -11.85803 -11.66546 -11.46419 -11.05768 -10.91690 -10.74804 -10.22574 -10.06759 -9.22420 -9.05573 -8.93671 -7.85362 -5.23491 -0.53290 0.19508 1.20369 1.43287 1.47500 1.53786 1.80466 1.92641 2.05474 2.11653 2.48710 2.77417 3.32624 3.50347 3.52876 3.67976 3.69415 3.79543 4.00301 4.04618 4.08420 4.10158 4.17272 4.28031 4.44060 4.48205 4.58456 4.61132 4.71910 4.72421 4.83961 4.88579 4.96862 5.01422 5.06472 5.08223 5.18567 5.22576 5.28774 5.31451 5.35254 5.44052 5.49868 5.53093 5.62103 5.77464 5.95435 6.15658 6.20569 6.41970 6.53938 7.05168 7.21582 7.74988 8.38659 9.23450 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.014953 B = 0.002365 C = 0.002201 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1872.128570 B =11836.502184 C =12720.213134 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.092 4.092 3 H 0.095 0.905 4 C 0.131 3.869 5 N -0.628 5.628 6 C -0.242 4.242 7 H 0.089 0.911 8 C -0.071 4.071 9 N -0.953 5.953 10 Si 0.981 3.019 11 H -0.271 1.271 12 H -0.299 1.299 13 H -0.277 1.277 14 C 0.189 3.811 15 C 0.136 3.864 16 H 0.074 0.926 17 N -0.695 5.695 18 C 0.552 3.448 19 O -0.584 6.584 20 C -0.160 4.160 21 C -0.047 4.047 22 C -0.144 4.144 23 C 0.159 3.841 24 N -0.407 5.407 25 C -0.032 4.032 26 C -0.200 4.200 27 C -0.201 4.201 28 C -0.026 4.026 29 C -0.149 4.149 30 C -0.041 4.041 31 H 0.069 0.931 32 H 0.079 0.921 33 H 0.050 0.950 34 H 0.057 0.943 35 H 0.025 0.975 36 H 0.244 0.756 37 H 0.017 0.983 38 H -0.012 1.012 39 H 0.413 0.587 40 H 0.160 0.840 41 H 0.165 0.835 42 H 0.182 0.818 43 H 0.156 0.844 44 H 0.158 0.842 45 H 0.189 0.811 46 H 0.155 0.845 47 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.357 16.082 15.576 25.104 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.112 4.112 3 H 0.113 0.887 4 C 0.006 3.994 5 N -0.354 5.354 6 C -0.370 4.370 7 H 0.107 0.893 8 C -0.264 4.264 9 N -0.602 5.602 10 Si 0.809 3.191 11 H -0.196 1.196 12 H -0.225 1.225 13 H -0.203 1.203 14 C 0.062 3.938 15 C 0.030 3.970 16 H 0.092 0.908 17 N -0.346 5.346 18 C 0.341 3.659 19 O -0.465 6.465 20 C -0.164 4.164 21 C -0.066 4.066 22 C -0.164 4.164 23 C 0.066 3.934 24 N -0.079 5.079 25 C -0.157 4.157 26 C -0.223 4.223 27 C -0.225 4.225 28 C -0.151 4.151 29 C -0.168 4.168 30 C -0.061 4.061 31 H 0.088 0.912 32 H 0.098 0.902 33 H 0.069 0.931 34 H 0.075 0.925 35 H 0.043 0.957 36 H 0.053 0.947 37 H 0.035 0.965 38 H 0.006 0.994 39 H 0.251 0.749 40 H 0.178 0.822 41 H 0.183 0.817 42 H 0.199 0.801 43 H 0.174 0.826 44 H 0.176 0.824 45 H 0.206 0.794 46 H 0.172 0.828 47 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -11.226 15.023 15.427 24.284 hybrid contribution 1.324 -0.611 -0.410 1.515 sum -9.902 14.413 15.018 23.050 Atomic orbital electron populations 1.21663 0.91586 1.02313 1.03151 1.22541 0.97356 0.98967 0.92341 0.88667 1.21873 0.85168 0.95829 0.96484 1.44727 1.09542 1.79235 1.01940 1.19478 0.90090 1.37629 0.89847 0.89304 1.25748 1.00789 1.02440 0.97435 1.70238 1.24198 1.54619 1.11160 0.85115 0.78129 0.78420 0.77454 1.19648 1.22508 1.20301 1.21094 0.92649 0.96503 0.83515 1.22094 0.96519 0.93626 0.84797 0.90837 1.45635 1.73306 1.10765 1.04861 1.18669 0.75564 0.87549 0.84077 1.90768 1.52102 1.16677 1.86949 1.19924 1.09045 0.94398 0.93012 1.21385 0.94049 0.90900 1.00250 1.21011 1.03985 1.02002 0.89378 1.18263 0.98047 0.90428 0.86704 1.41785 1.54830 1.06370 1.04942 1.22395 1.10128 1.01305 0.81915 1.21374 1.08544 0.92035 1.00375 1.21385 1.08712 1.00051 0.92326 1.22458 1.09679 0.82095 1.00902 1.20895 1.04728 0.90909 1.00301 1.21144 0.93489 1.00867 0.90568 0.91216 0.90199 0.93103 0.92490 0.95714 0.94725 0.96492 0.99350 0.74913 0.82226 0.81738 0.80112 0.82597 0.82427 0.79396 0.82763 0.84760 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.88 9.31 71.98 0.67 -2.21 16 2 C -0.09 -2.82 3.25 -9.41 -0.03 -2.85 16 3 H 0.10 2.61 8.00 -2.38 -0.02 2.59 16 4 C 0.13 5.14 6.70 86.85 0.58 5.72 16 5 N -0.63 -32.79 3.39 -691.98 -2.35 -35.14 16 6 C -0.24 -13.74 10.28 84.03 0.86 -12.87 16 7 H 0.09 4.73 7.83 -2.91 -0.02 4.70 16 8 C -0.07 -4.20 5.49 84.86 0.47 -3.73 16 9 N -0.95 -60.32 10.31 21.65 0.22 -60.10 16 10 Si 0.98 46.89 29.55 68.60 2.03 48.92 16 11 H -0.27 -12.20 7.11 99.48 0.71 -11.50 16 12 H -0.30 -14.54 7.11 99.48 0.71 -13.84 16 13 H -0.28 -12.76 7.11 99.48 0.71 -12.06 16 14 C 0.19 9.87 5.12 86.73 0.44 10.31 16 15 C 0.14 5.20 2.70 46.18 0.12 5.32 16 16 H 0.07 3.06 7.59 -2.39 -0.02 3.04 16 17 N -0.69 -21.92 5.08 -439.97 -2.23 -24.15 16 18 C 0.55 19.29 7.76 86.73 0.67 19.96 16 19 O -0.58 -26.07 16.06 -3.98 -0.06 -26.13 16 20 C -0.16 -4.24 5.88 -20.08 -0.12 -4.36 16 21 C -0.05 -0.88 9.53 22.50 0.21 -0.67 16 22 C -0.14 -2.36 9.43 22.34 0.21 -2.15 16 23 C 0.16 3.00 6.62 38.26 0.25 3.25 16 24 N -0.41 -7.24 2.97 -346.58 -1.03 -8.26 16 25 C -0.03 -0.53 10.73 83.16 0.89 0.36 16 26 C -0.20 -3.11 10.86 22.16 0.24 -2.87 16 27 C -0.20 -3.04 10.86 22.16 0.24 -2.80 16 28 C -0.03 -0.40 10.73 83.16 0.89 0.49 16 29 C -0.15 -2.94 9.43 22.34 0.21 -2.73 16 30 C -0.04 -1.02 9.58 22.50 0.22 -0.81 16 31 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 32 H 0.08 1.43 8.14 -2.39 -0.02 1.42 16 33 H 0.05 1.21 8.07 -2.39 -0.02 1.19 16 34 H 0.06 2.07 8.14 -2.39 -0.02 2.05 16 35 H 0.03 0.97 7.99 -2.38 -0.02 0.95 16 36 H 0.24 15.15 8.31 -92.71 -0.77 14.38 16 37 H 0.02 0.98 7.27 -2.39 -0.02 0.96 16 38 H -0.01 -0.74 7.50 -2.39 -0.02 -0.76 16 39 H 0.41 9.65 6.54 -92.71 -0.61 9.05 16 40 H 0.16 2.14 6.39 -2.91 -0.02 2.12 16 41 H 0.17 1.67 6.68 -2.91 -0.02 1.65 16 42 H 0.18 2.16 6.99 -2.91 -0.02 2.14 16 43 H 0.16 1.80 8.06 -2.91 -0.02 1.78 16 44 H 0.16 1.71 8.06 -2.91 -0.02 1.69 16 45 H 0.19 1.78 6.99 -2.91 -0.02 1.76 16 46 H 0.15 2.32 6.68 -2.91 -0.02 2.30 16 47 H 0.13 3.57 7.64 -2.91 -0.02 3.55 16 Total: -1.00 -81.00 383.96 4.00 -77.00 By element: Atomic # 1 Polarization: 20.10 SS G_CDS: 0.38 Total: 20.48 kcal Atomic # 6 Polarization: 0.33 SS G_CDS: 7.04 Total: 7.38 kcal Atomic # 7 Polarization: -122.26 SS G_CDS: -5.39 Total: -127.65 kcal Atomic # 8 Polarization: -26.07 SS G_CDS: -0.06 Total: -26.13 kcal Atomic # 14 Polarization: 46.89 SS G_CDS: 2.03 Total: 48.92 kcal Total: -81.00 4.00 -77.00 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001080063050.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.236 kcal (2) G-P(sol) polarization free energy of solvation -81.002 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.234 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.005 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.997 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.239 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.79 seconds