Wall clock time and date at job start Tue Mar 31 2020 22:49:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09001 * 110.78100 * 2 1 4 4 C 1.54317 * 110.71930 * 236.76012 * 2 1 3 5 5 N 1.47024 * 107.27412 * 219.44145 * 4 2 1 6 6 C 1.36936 * 125.65507 * 178.98502 * 5 4 2 7 7 H 1.08003 * 119.99722 * 0.02562 * 6 5 4 8 8 C 1.38810 * 120.00237 * 180.02562 * 6 5 4 9 9 N 1.31619 * 120.00057 * 0.02562 * 8 6 5 10 10 Si 1.86802 * 119.99760 * 180.02562 * 8 6 5 11 11 H 1.48499 * 109.47013 * 60.00202 * 10 8 6 12 12 H 1.48501 * 109.46870 * 179.97438 * 10 8 6 13 13 H 1.48499 * 109.47079 * 300.00004 * 10 8 6 14 14 C 1.47426 * 108.70049 * 358.94291 * 5 4 2 15 15 C 1.54916 * 104.83329 * 24.12693 * 14 5 4 16 16 H 1.08999 * 111.03886 * 81.08260 * 15 14 5 17 17 N 1.46504 * 111.00500 * 204.91999 * 15 14 5 18 18 C 1.34777 * 119.99610 * 267.19363 * 17 15 14 19 19 O 1.21281 * 120.00013 * 359.97438 * 18 17 15 20 20 C 1.50696 * 119.99903 * 179.97438 * 18 17 15 21 21 C 1.50702 * 109.47240 * 180.02562 * 20 18 17 22 22 C 1.36180 * 120.19060 * 264.99870 * 21 20 18 23 23 C 1.39315 * 120.86402 * 179.97438 * 22 21 20 24 24 C 1.36112 * 121.06783 * 0.28578 * 23 22 21 25 25 C 1.40549 * 119.74693 * 359.49320 * 24 23 22 26 26 N 1.33695 * 121.08184 * 180.24856 * 25 24 23 27 27 C 1.31085 * 121.31791 * 180.27099 * 26 25 24 28 28 C 1.39334 * 121.75961 * 359.95506 * 27 26 25 29 29 C 1.36577 * 119.93174 * 0.02562 * 28 27 26 30 30 C 1.40386 * 120.19423 * 85.02166 * 21 20 18 31 31 H 1.08999 * 109.46628 * 296.76224 * 1 2 3 32 32 H 1.09000 * 109.47088 * 56.75868 * 1 2 3 33 33 H 1.09002 * 109.46787 * 176.76391 * 1 2 3 34 34 H 1.08997 * 109.88615 * 338.86327 * 4 2 1 35 35 H 1.08999 * 109.88109 * 100.02794 * 4 2 1 36 36 H 0.96996 * 119.99962 * 180.02562 * 9 8 6 37 37 H 1.09004 * 110.37117 * 265.29002 * 14 5 4 38 38 H 1.09001 * 110.36993 * 142.96442 * 14 5 4 39 39 H 0.96991 * 120.00014 * 87.19567 * 17 15 14 40 40 H 1.09005 * 109.47038 * 59.99842 * 20 18 17 41 41 H 1.09000 * 109.47280 * 300.00244 * 20 18 17 42 42 H 1.08000 * 119.56449 * 0.02664 * 22 21 20 43 43 H 1.08002 * 119.46136 * 179.97438 * 23 22 21 44 44 H 1.08000 * 120.12132 * 179.71998 * 24 23 22 45 45 H 1.08003 * 119.12014 * 179.97438 * 27 26 25 46 46 H 1.07991 * 120.03811 * 180.02562 * 28 27 26 47 47 H 1.08009 * 120.92202 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9168 1.0191 0.0000 4 6 2.0760 -0.7912 -1.2072 5 7 3.2446 -1.5507 -0.7390 6 6 4.0045 -2.3968 -1.5018 7 1 3.7618 -2.5501 -2.5430 8 6 5.0867 -3.0575 -0.9368 9 7 5.3821 -2.8712 0.3322 10 14 6.1236 -4.2112 -1.9776 11 1 6.7159 -3.4572 -3.1116 12 1 7.2104 -4.7867 -1.1452 13 1 5.2694 -5.3062 -2.5034 14 6 3.4634 -1.2498 0.6875 15 6 2.0790 -0.7954 1.2138 16 1 1.4449 -1.6531 1.4380 17 7 2.2215 0.0697 2.3875 18 6 2.1874 -0.4627 3.6252 19 8 2.0382 -1.6579 3.7673 20 6 2.3345 0.4271 4.8325 21 6 2.2625 -0.4088 6.0844 22 6 1.0795 -0.5558 6.7426 23 6 0.9968 -1.3257 7.9008 24 6 2.0949 -1.9476 8.4106 25 6 3.3330 -1.8236 7.7570 26 7 4.4275 -2.4271 8.2317 27 6 5.5856 -2.3103 7.6287 28 6 5.7349 -1.5556 6.4670 29 6 4.6566 -0.9132 5.9285 30 6 3.4147 -1.0401 6.5791 31 1 -0.3632 0.4628 0.9176 32 1 -0.3633 0.5633 -0.8595 33 1 -0.3633 -1.0261 -0.0580 34 1 1.3130 -1.4758 -1.5775 35 1 2.3741 -0.1024 -1.9976 36 1 6.1385 -3.3326 0.7269 37 1 4.1932 -0.4478 0.7985 38 1 3.7961 -2.1426 1.2169 39 1 2.3404 1.0256 2.2738 40 1 1.5315 1.1642 4.8406 41 1 3.2964 0.9382 4.7921 42 1 0.1936 -0.0698 6.3613 43 1 0.0470 -1.4265 8.4049 44 1 2.0143 -2.5371 9.3120 45 1 6.4471 -2.8128 8.0433 46 1 6.7021 -1.4787 5.9929 47 1 4.7541 -0.3242 5.0284 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001080113806.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:49:15 Heat of formation + Delta-G solvation = 43.793190 kcal Electronic energy + Delta-G solvation = -29215.607996 eV Core-core repulsion = 25363.739240 eV Total energy + Delta-G solvation = -3851.868756 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -40.97514 -39.47456 -37.72252 -36.98642 -34.09474 -33.89872 -32.66827 -31.30224 -30.53177 -30.37632 -28.50271 -26.97400 -25.62005 -24.24685 -23.62182 -23.57247 -21.54203 -20.33555 -20.10381 -19.42239 -18.16013 -17.12161 -17.02468 -16.88160 -16.78221 -15.80131 -15.06431 -14.82413 -14.54804 -14.34614 -14.23878 -13.97028 -13.69663 -13.56342 -13.19478 -12.99010 -12.93684 -12.89946 -12.53579 -12.35943 -11.96983 -11.72133 -11.68645 -11.62370 -11.27629 -11.21910 -11.09503 -10.78118 -10.65341 -10.45689 -10.39300 -10.00347 -9.78692 -9.78487 -9.52968 -9.46756 -8.74703 -8.65630 -8.46001 -8.17318 -6.84808 -5.64134 -3.07692 0.38985 0.85641 1.99653 2.89454 2.94380 3.40913 3.44925 3.46737 3.53631 4.14332 4.29541 4.40665 4.49331 4.67814 4.80458 4.82570 5.00987 5.03938 5.10062 5.16633 5.22068 5.29508 5.30618 5.36946 5.42613 5.50990 5.52967 5.73857 5.82064 5.93236 5.95116 6.02311 6.03666 6.07284 6.13650 6.23041 6.32952 6.36075 6.43190 6.46527 6.54966 6.64834 6.78694 6.84666 6.93932 7.43535 7.61022 7.82274 7.91462 7.92142 8.36687 8.58540 9.20923 9.82264 10.45362 11.38676 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.010964 B = 0.003481 C = 0.002785 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2553.266449 B = 8042.150453 C =10051.553665 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.112 4.112 3 H 0.073 0.927 4 C 0.141 3.859 5 N -0.603 5.603 6 C -0.228 4.228 7 H 0.078 0.922 8 C -0.008 4.008 9 N -0.919 5.919 10 Si 0.914 3.086 11 H -0.285 1.285 12 H -0.290 1.290 13 H -0.284 1.284 14 C 0.150 3.850 15 C 0.119 3.881 16 H 0.092 0.908 17 N -0.714 5.714 18 C 0.510 3.490 19 O -0.524 6.524 20 C -0.108 4.108 21 C -0.034 4.034 22 C -0.110 4.110 23 C -0.098 4.098 24 C -0.098 4.098 25 C 0.127 3.873 26 N -0.479 5.479 27 C 0.131 3.869 28 C -0.174 4.174 29 C -0.048 4.048 30 C -0.084 4.084 31 H 0.049 0.951 32 H 0.052 0.948 33 H 0.056 0.944 34 H 0.027 0.973 35 H 0.023 0.977 36 H 0.253 0.747 37 H 0.012 0.988 38 H 0.111 0.889 39 H 0.394 0.606 40 H 0.104 0.896 41 H 0.103 0.897 42 H 0.125 0.875 43 H 0.128 0.872 44 H 0.133 0.867 45 H 0.158 0.842 46 H 0.138 0.862 47 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.865 10.703 13.818 18.778 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.131 4.131 3 H 0.091 0.909 4 C 0.015 3.985 5 N -0.329 5.329 6 C -0.356 4.356 7 H 0.096 0.904 8 C -0.204 4.204 9 N -0.566 5.566 10 Si 0.745 3.255 11 H -0.212 1.212 12 H -0.215 1.215 13 H -0.211 1.211 14 C 0.023 3.977 15 C 0.014 3.986 16 H 0.110 0.890 17 N -0.365 5.365 18 C 0.295 3.705 19 O -0.399 6.399 20 C -0.148 4.148 21 C -0.036 4.036 22 C -0.128 4.128 23 C -0.118 4.118 24 C -0.116 4.116 25 C 0.005 3.995 26 N -0.187 5.187 27 C -0.042 4.042 28 C -0.194 4.194 29 C -0.074 4.074 30 C -0.086 4.086 31 H 0.069 0.931 32 H 0.071 0.929 33 H 0.075 0.925 34 H 0.045 0.955 35 H 0.041 0.959 36 H 0.063 0.937 37 H 0.030 0.970 38 H 0.129 0.871 39 H 0.227 0.773 40 H 0.123 0.877 41 H 0.121 0.879 42 H 0.143 0.857 43 H 0.146 0.854 44 H 0.150 0.850 45 H 0.175 0.825 46 H 0.156 0.844 47 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -6.971 9.179 14.712 18.690 hybrid contribution 0.817 0.424 -1.577 1.826 sum -6.154 9.604 13.135 17.397 Atomic orbital electron populations 1.21735 0.94996 1.01876 1.00820 1.22430 0.95196 0.99121 0.96359 0.90863 1.21343 0.90287 0.93175 0.93744 1.44380 1.30834 1.50489 1.07218 1.19022 1.06338 1.17333 0.92881 0.90407 1.24803 0.98765 1.00487 0.96374 1.69787 1.29983 1.46035 1.10838 0.86158 0.79775 0.80660 0.78931 1.21208 1.21547 1.21081 1.22217 0.89344 1.01021 0.85072 1.22702 1.01014 0.92397 0.82466 0.89032 1.45872 1.74086 1.10877 1.05678 1.20279 0.77243 0.88955 0.84023 1.90773 1.47767 1.15349 1.85987 1.20751 1.05236 0.97957 0.90901 1.19063 0.92883 0.96999 0.94609 1.20721 0.96987 0.99428 0.95680 1.20814 0.98479 0.96575 0.95901 1.20741 0.90573 1.00097 1.00222 1.18826 0.93247 0.94760 0.92619 1.68029 0.98766 1.19833 1.32113 1.22934 0.95103 0.94254 0.91862 1.21902 1.00436 0.99286 0.97798 1.21512 0.91514 0.96562 0.97829 1.18605 0.94361 0.99256 0.96415 0.93148 0.92903 0.92504 0.95505 0.95906 0.93654 0.97028 0.87148 0.77281 0.87740 0.87900 0.85686 0.85362 0.84953 0.82503 0.84371 0.84542 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.83 9.16 37.16 0.34 -1.49 16 2 C -0.11 -1.82 3.20 -88.78 -0.28 -2.10 16 3 H 0.07 1.08 8.00 -51.93 -0.42 0.66 16 4 C 0.14 2.88 6.84 -3.07 -0.02 2.86 16 5 N -0.60 -15.49 3.39 -170.07 -0.58 -16.06 16 6 C -0.23 -6.40 10.27 -15.06 -0.15 -6.55 16 7 H 0.08 2.10 7.83 -52.48 -0.41 1.69 16 8 C -0.01 -0.24 5.49 -17.43 -0.10 -0.33 16 9 N -0.92 -27.24 10.09 55.49 0.56 -26.68 16 10 Si 0.91 22.33 29.55 -169.99 -5.02 17.30 16 11 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 12 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 13 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 14 C 0.15 3.65 5.58 -2.52 -0.01 3.63 16 15 C 0.12 2.26 2.87 -65.78 -0.19 2.07 16 16 H 0.09 1.97 7.44 -51.93 -0.39 1.58 16 17 N -0.71 -10.61 5.20 -51.72 -0.27 -10.88 16 18 C 0.51 8.00 7.82 -10.99 -0.09 7.92 16 19 O -0.52 -10.96 15.67 5.56 0.09 -10.87 16 20 C -0.11 -1.20 5.24 -29.04 -0.15 -1.35 16 21 C -0.03 -0.45 4.38 -104.55 -0.46 -0.90 16 22 C -0.11 -1.27 9.58 -39.92 -0.38 -1.65 16 23 C -0.10 -1.07 9.94 -39.95 -0.40 -1.47 16 24 C -0.10 -1.23 9.98 -39.47 -0.39 -1.63 16 25 C 0.13 1.89 6.60 -84.86 -0.56 1.33 16 26 N -0.48 -7.10 10.34 -10.98 -0.11 -7.22 16 27 C 0.13 1.66 11.14 -17.46 -0.19 1.47 16 28 C -0.17 -2.21 10.03 -39.77 -0.40 -2.61 16 29 C -0.05 -0.67 9.36 -39.23 -0.37 -1.04 16 30 C -0.08 -1.24 5.74 -106.81 -0.61 -1.85 16 31 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.06 0.81 8.06 -51.93 -0.42 0.40 16 34 H 0.03 0.55 7.76 -51.93 -0.40 0.15 16 35 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 36 H 0.25 7.33 8.31 -40.82 -0.34 6.99 16 37 H 0.01 0.30 8.14 -51.93 -0.42 -0.12 16 38 H 0.11 3.20 5.87 -51.93 -0.30 2.90 16 39 H 0.39 4.43 8.57 -40.82 -0.35 4.08 16 40 H 0.10 0.80 8.04 -51.93 -0.42 0.39 16 41 H 0.10 0.94 6.72 -51.93 -0.35 0.59 16 42 H 0.13 1.13 8.05 -52.49 -0.42 0.71 16 43 H 0.13 1.00 8.06 -52.49 -0.42 0.58 16 44 H 0.13 1.43 8.06 -52.49 -0.42 1.01 16 45 H 0.16 1.45 8.06 -52.48 -0.42 1.02 16 46 H 0.14 1.42 8.06 -52.49 -0.42 1.00 16 47 H 0.14 1.76 6.57 -52.48 -0.34 1.41 16 LS Contribution 384.85 15.07 5.80 5.80 Total: -1.00 -35.79 384.85 -10.70 -46.49 By element: Atomic # 1 Polarization: 12.58 SS G_CDS: -6.74 Total: 5.84 kcal Atomic # 6 Polarization: 0.71 SS G_CDS: -4.42 Total: -3.71 kcal Atomic # 7 Polarization: -60.44 SS G_CDS: -0.40 Total: -60.84 kcal Atomic # 8 Polarization: -10.96 SS G_CDS: 0.09 Total: -10.87 kcal Atomic # 14 Polarization: 22.33 SS G_CDS: -5.02 Total: 17.30 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -35.79 -10.70 -46.49 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001080113806.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.279 kcal (2) G-P(sol) polarization free energy of solvation -35.787 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.493 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.699 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.486 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.793 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds