Wall clock time and date at job start Tue Mar 31 2020 22:49:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08995 * 110.91456 * 2 1 4 4 C 1.54912 * 111.00106 * 236.10021 * 2 1 3 5 5 N 1.47424 * 104.82852 * 204.91423 * 4 2 1 6 6 C 1.36941 * 125.64519 * 204.09247 * 5 4 2 7 7 H 1.07996 * 120.00297 * 0.02562 * 6 5 4 8 8 C 1.38821 * 119.99786 * 180.02562 * 6 5 4 9 9 N 1.31614 * 119.99796 * 359.97438 * 8 6 5 10 10 Si 1.86796 * 119.99790 * 180.02562 * 8 6 5 11 11 H 1.48500 * 109.47369 * 59.99936 * 10 8 6 12 12 H 1.48499 * 109.46967 * 179.97438 * 10 8 6 13 13 H 1.48506 * 109.47223 * 299.99613 * 10 8 6 14 14 C 1.47019 * 108.70678 * 24.13150 * 5 4 2 15 15 C 1.54327 * 107.27112 * 358.93823 * 14 5 4 16 16 H 1.08995 * 110.71962 * 96.34976 * 15 14 5 17 17 N 1.46491 * 110.71883 * 219.44866 * 15 14 5 18 18 C 1.34779 * 120.00238 * 273.54265 * 17 15 14 19 19 O 1.21638 * 119.99441 * 0.02562 * 18 17 15 20 20 C 1.47132 * 120.00237 * 180.02562 * 18 17 15 21 21 C 1.36618 * 126.97520 * 359.97438 * 20 18 17 22 22 N 1.34710 * 108.68218 * 180.02562 * 21 20 18 23 23 H 0.96998 * 124.72418 * 180.02562 * 22 21 20 24 24 C 1.36223 * 110.54626 * 359.97438 * 22 21 20 25 25 C 1.35743 * 108.67973 * 0.23441 * 24 22 21 26 26 C 1.48288 * 126.98033 * 179.77374 * 25 24 22 27 27 C 1.39389 * 120.12389 * 129.74340 * 26 25 24 28 28 C 1.38011 * 119.86927 * 179.74550 * 27 26 25 29 29 C 1.38331 * 120.12383 * 0.55274 * 28 27 26 30 30 C 1.38337 * 120.25597 * 359.69967 * 29 28 27 31 31 C 1.37999 * 120.12650 * 0.02562 * 30 29 28 32 32 H 1.09002 * 109.46816 * 296.09501 * 1 2 3 33 33 H 1.08991 * 109.47529 * 56.09608 * 1 2 3 34 34 H 1.08999 * 109.46623 * 176.10063 * 1 2 3 35 35 H 1.08992 * 110.36822 * 86.07674 * 4 2 1 36 36 H 1.08999 * 110.36843 * 323.74697 * 4 2 1 37 37 H 0.97000 * 119.99694 * 179.97438 * 9 8 6 38 38 H 1.08996 * 109.87967 * 239.52401 * 14 5 4 39 39 H 1.08999 * 110.01524 * 118.43034 * 14 5 4 40 40 H 0.97001 * 120.00523 * 93.55086 * 17 15 14 41 41 H 1.07995 * 125.65579 * 0.03328 * 21 20 18 42 42 H 1.08002 * 125.65562 * 179.97438 * 24 22 21 43 43 H 1.07999 * 120.06673 * 359.97438 * 27 26 25 44 44 H 1.07996 * 119.93862 * 180.27270 * 28 27 26 45 45 H 1.07997 * 119.87247 * 179.71797 * 29 28 27 46 46 H 1.07995 * 119.93796 * 180.02562 * 30 29 28 47 47 H 1.07998 * 120.06997 * 179.97438 * 31 30 29 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9191 1.0181 0.0000 4 6 2.0852 -0.8066 -1.2004 5 7 3.4271 -1.2430 -0.7734 6 6 4.4640 -1.5666 -1.6074 7 1 4.3333 -1.5116 -2.6780 8 6 5.6831 -1.9654 -1.0765 9 7 5.8426 -2.0319 0.2282 10 14 7.0977 -2.4061 -2.2141 11 1 7.4400 -1.2319 -3.0563 12 1 8.2804 -2.7959 -1.4051 13 1 6.6976 -3.5403 -3.0851 14 6 3.4675 -1.2742 0.6959 15 6 2.0862 -0.8080 1.2022 16 1 1.4480 -1.6633 1.4239 17 7 2.2288 0.0495 2.3814 18 6 2.3024 -0.5005 3.6097 19 8 2.2509 -1.7089 3.7389 20 6 2.4451 0.3607 4.7940 21 6 2.5175 1.7248 4.8142 22 7 2.6449 2.1313 6.0922 23 1 2.7159 3.0570 6.3731 24 6 2.6589 1.0613 6.9351 25 6 2.5437 -0.0735 6.1991 26 6 2.5196 -1.4668 6.7060 27 6 1.5129 -2.3415 6.3002 28 6 1.4985 -3.6387 6.7711 29 6 2.4739 -4.0680 7.6531 30 6 3.4724 -3.2028 8.0633 31 6 3.5001 -1.9051 7.5945 32 1 -0.3633 0.4520 0.9229 33 1 -0.3634 0.5732 -0.8528 34 1 -0.3632 -1.0253 -0.0699 35 1 2.1559 -0.1720 -2.0837 36 1 1.4519 -1.6704 -1.4024 37 1 6.6943 -2.3108 0.5991 38 1 4.2426 -0.5998 1.0597 39 1 3.6663 -2.2884 1.0422 40 1 2.2702 1.0131 2.2783 41 1 2.4789 2.3701 3.9491 42 1 2.7510 1.1079 8.0102 43 1 0.7479 -2.0058 5.6158 44 1 0.7216 -4.3186 6.4541 45 1 2.4561 -5.0826 8.0225 46 1 4.2316 -3.5435 8.7516 47 1 4.2797 -1.2303 7.9157 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001080940154.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:49:04 Heat of formation + Delta-G solvation = 62.695864 kcal Electronic energy + Delta-G solvation = -29162.428947 eV Core-core repulsion = 25311.379872 eV Total energy + Delta-G solvation = -3851.049075 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -41.21017 -38.98277 -38.57106 -37.18543 -33.75431 -32.55761 -32.40098 -30.69083 -30.31329 -30.12626 -28.36730 -27.42045 -25.56072 -23.87691 -22.82054 -22.59509 -22.07802 -20.25412 -20.04282 -19.51822 -18.89938 -18.47147 -16.79611 -16.39362 -15.98016 -15.56864 -14.98960 -14.90407 -14.75477 -14.30474 -13.95488 -13.78747 -13.61636 -13.41160 -13.18585 -13.14780 -12.89292 -12.77463 -12.63947 -12.47778 -12.03164 -11.84091 -11.61540 -11.26251 -10.99991 -10.94753 -10.83829 -10.71233 -10.49166 -10.32151 -9.90238 -9.85201 -9.63119 -9.41618 -9.13451 -8.63163 -8.55171 -8.52130 -8.23645 -7.93932 -6.75284 -5.60788 -2.96561 1.38958 1.71166 1.87201 2.50502 3.08967 3.45479 3.49427 3.51686 3.73081 3.95966 4.11055 4.56761 4.77480 4.95733 5.00281 5.13087 5.16630 5.20071 5.33450 5.37954 5.46408 5.51398 5.61824 5.62327 5.71654 5.78768 5.85423 5.95513 6.06224 6.07814 6.21853 6.22585 6.29051 6.31389 6.43184 6.52308 6.58066 6.67864 6.69648 6.75511 6.86894 6.91770 6.92866 7.06315 7.25972 7.31350 7.65897 7.73015 7.96164 8.14156 8.34794 8.88094 9.29718 9.90449 10.55852 11.49251 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.010338 B = 0.003346 C = 0.002996 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2707.775770 B = 8366.315624 C = 9342.610412 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.114 4.114 3 H 0.076 0.924 4 C 0.141 3.859 5 N -0.606 5.606 6 C -0.233 4.233 7 H 0.077 0.923 8 C -0.006 4.006 9 N -0.917 5.917 10 Si 0.910 3.090 11 H -0.286 1.286 12 H -0.291 1.291 13 H -0.285 1.285 14 C 0.174 3.826 15 C 0.125 3.875 16 H 0.085 0.915 17 N -0.713 5.713 18 C 0.581 3.419 19 O -0.529 6.529 20 C -0.201 4.201 21 C 0.040 3.960 22 N -0.549 5.549 23 H 0.417 0.583 24 C -0.009 4.009 25 C -0.079 4.079 26 C -0.008 4.008 27 C -0.065 4.065 28 C -0.124 4.124 29 C -0.124 4.124 30 C -0.129 4.129 31 C -0.112 4.112 32 H 0.050 0.950 33 H 0.052 0.948 34 H 0.055 0.945 35 H 0.040 0.960 36 H 0.021 0.979 37 H 0.253 0.747 38 H 0.049 0.951 39 H 0.047 0.953 40 H 0.390 0.610 41 H 0.172 0.828 42 H 0.171 0.829 43 H 0.120 0.880 44 H 0.118 0.882 45 H 0.116 0.884 46 H 0.117 0.883 47 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.645 9.515 15.916 21.381 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.134 4.134 3 H 0.094 0.906 4 C 0.015 3.985 5 N -0.333 5.333 6 C -0.361 4.361 7 H 0.095 0.905 8 C -0.203 4.203 9 N -0.563 5.563 10 Si 0.741 3.259 11 H -0.212 1.212 12 H -0.216 1.216 13 H -0.212 1.212 14 C 0.049 3.951 15 C 0.020 3.980 16 H 0.104 0.896 17 N -0.363 5.363 18 C 0.368 3.632 19 O -0.406 6.406 20 C -0.211 4.211 21 C -0.095 4.095 22 N -0.143 5.143 23 H 0.254 0.746 24 C -0.138 4.138 25 C -0.085 4.085 26 C -0.009 4.009 27 C -0.083 4.083 28 C -0.142 4.142 29 C -0.142 4.142 30 C -0.147 4.147 31 C -0.130 4.130 32 H 0.069 0.931 33 H 0.071 0.929 34 H 0.074 0.926 35 H 0.059 0.941 36 H 0.039 0.961 37 H 0.063 0.937 38 H 0.067 0.933 39 H 0.065 0.935 40 H 0.223 0.777 41 H 0.190 0.810 42 H 0.188 0.812 43 H 0.138 0.862 44 H 0.136 0.864 45 H 0.134 0.866 46 H 0.135 0.865 47 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -10.433 8.664 16.077 21.033 hybrid contribution 1.080 0.687 -0.636 1.429 sum -9.353 9.351 15.442 20.332 Atomic orbital electron populations 1.21694 0.95134 1.01767 1.00849 1.22604 0.94717 0.99435 0.96598 0.90615 1.21577 0.87721 0.94974 0.94274 1.44411 1.07777 1.79198 1.01908 1.18992 0.89388 1.38861 0.88867 0.90470 1.24824 0.97834 1.01713 0.95935 1.69978 1.24236 1.52979 1.09147 0.86232 0.81991 0.78241 0.79465 1.21249 1.21642 1.21155 1.21463 0.90201 1.00441 0.83040 1.22410 1.00081 0.92636 0.82837 0.89649 1.45763 1.75070 1.09617 1.05889 1.17292 0.76470 0.87448 0.81969 1.90806 1.49687 1.14104 1.85988 1.20568 1.15081 0.92060 0.93404 1.21875 1.05174 0.95095 0.87386 1.41364 1.57598 1.09130 1.06175 0.74645 1.21750 1.10699 0.85392 0.95936 1.19108 1.06905 0.91604 0.90917 1.17999 0.95194 0.91339 0.96345 1.21104 0.97711 0.92904 0.96571 1.21038 0.99276 0.95945 0.97908 1.21105 0.95360 0.99264 0.98466 1.20940 0.98839 0.93864 1.01066 1.21107 0.97976 0.96094 0.97822 0.93123 0.92920 0.92606 0.94135 0.96134 0.93692 0.93288 0.93465 0.77708 0.81037 0.81227 0.86185 0.86404 0.86637 0.86497 0.86520 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.84 9.31 37.16 0.35 -1.49 16 2 C -0.11 -1.92 3.25 -88.46 -0.29 -2.21 16 3 H 0.08 1.22 8.00 -51.93 -0.42 0.80 16 4 C 0.14 2.93 6.70 -2.53 -0.02 2.92 16 5 N -0.61 -15.94 3.39 -170.07 -0.58 -16.52 16 6 C -0.23 -6.68 10.28 -15.05 -0.15 -6.83 16 7 H 0.08 2.11 7.83 -52.49 -0.41 1.70 16 8 C -0.01 -0.18 5.49 -17.43 -0.10 -0.28 16 9 N -0.92 -28.31 10.31 55.49 0.57 -27.73 16 10 Si 0.91 22.76 29.55 -169.99 -5.02 17.74 16 11 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 12 H -0.29 -7.35 7.11 56.52 0.40 -6.94 16 13 H -0.28 -7.02 7.11 56.52 0.40 -6.62 16 14 C 0.17 4.48 5.12 -3.06 -0.02 4.47 16 15 C 0.13 2.47 2.70 -66.10 -0.18 2.29 16 16 H 0.09 1.80 7.59 -51.93 -0.39 1.41 16 17 N -0.71 -11.96 5.12 -53.20 -0.27 -12.23 16 18 C 0.58 10.64 7.80 -12.65 -0.10 10.55 16 19 O -0.53 -11.75 13.77 5.24 0.07 -11.67 16 20 C -0.20 -2.97 6.29 -103.15 -0.65 -3.62 16 21 C 0.04 0.41 11.38 -16.87 -0.19 0.22 16 22 N -0.55 -4.37 5.88 -12.64 -0.07 -4.44 16 23 H 0.42 1.68 8.96 -40.82 -0.37 1.31 16 24 C -0.01 -0.09 11.80 -16.49 -0.19 -0.28 16 25 C -0.08 -1.11 5.79 -102.93 -0.60 -1.70 16 26 C -0.01 -0.12 5.41 -104.90 -0.57 -0.69 16 27 C -0.06 -1.02 7.93 -39.24 -0.31 -1.33 16 28 C -0.12 -1.76 10.03 -39.63 -0.40 -2.16 16 29 C -0.12 -1.61 10.04 -39.51 -0.40 -2.01 16 30 C -0.13 -1.65 10.03 -39.63 -0.40 -2.05 16 31 C -0.11 -1.52 9.72 -39.24 -0.38 -1.91 16 32 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.05 0.77 8.07 -51.93 -0.42 0.35 16 35 H 0.04 0.81 8.14 -51.93 -0.42 0.38 16 36 H 0.02 0.43 7.98 -51.93 -0.41 0.02 16 37 H 0.25 7.65 8.31 -40.82 -0.34 7.31 16 38 H 0.05 1.39 7.27 -51.93 -0.38 1.01 16 39 H 0.05 1.43 7.50 -51.93 -0.39 1.04 16 40 H 0.39 5.22 7.45 -40.82 -0.30 4.92 16 41 H 0.17 1.24 7.44 -52.49 -0.39 0.85 16 42 H 0.17 1.17 8.06 -52.49 -0.42 0.75 16 43 H 0.12 1.96 7.46 -52.49 -0.39 1.57 16 44 H 0.12 1.45 8.06 -52.49 -0.42 1.03 16 45 H 0.12 1.21 8.06 -52.49 -0.42 0.79 16 46 H 0.12 1.19 8.06 -52.49 -0.42 0.77 16 47 H 0.12 1.36 8.06 -52.49 -0.42 0.93 16 LS Contribution 387.02 15.07 5.83 5.83 Total: -1.00 -37.09 387.02 -10.85 -47.94 By element: Atomic # 1 Polarization: 14.01 SS G_CDS: -6.79 Total: 7.21 kcal Atomic # 6 Polarization: -1.54 SS G_CDS: -4.59 Total: -6.12 kcal Atomic # 7 Polarization: -60.57 SS G_CDS: -0.35 Total: -60.92 kcal Atomic # 8 Polarization: -11.75 SS G_CDS: 0.07 Total: -11.67 kcal Atomic # 14 Polarization: 22.76 SS G_CDS: -5.02 Total: 17.74 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -37.09 -10.85 -47.94 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001080940154.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.635 kcal (2) G-P(sol) polarization free energy of solvation -37.091 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.543 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.848 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.939 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.696 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds