Wall clock time and date at job start Tue Mar 31 2020 22:31:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09002 * 109.87489 * 2 1 4 4 C 1.54322 * 110.01139 * 238.90192 * 2 1 3 5 5 H 1.09006 * 110.71959 * 336.67661 * 4 2 1 6 6 N 1.46498 * 110.72056 * 99.77624 * 4 2 1 7 7 C 1.34773 * 119.99897 * 205.00000 * 6 4 2 8 8 O 1.21286 * 119.99827 * 359.97438 * 7 6 4 9 9 C 1.50697 * 120.00211 * 180.02562 * 7 6 4 10 10 C 1.50694 * 109.47496 * 180.02562 * 9 7 6 11 11 C 1.39355 * 119.46298 * 269.72230 * 10 9 7 12 12 C 1.36141 * 120.86773 * 179.72919 * 11 10 9 13 13 C 1.40430 * 119.61462 * 0.56324 * 12 11 10 14 14 C 1.40770 * 121.37650 * 179.72771 * 13 12 11 15 15 C 1.36575 * 118.15002 * 179.97438 * 14 13 12 16 16 C 1.39336 * 119.93384 * 359.97438 * 15 14 13 17 17 N 1.31084 * 121.74812 * 359.97438 * 16 15 14 18 18 C 1.33679 * 121.32394 * 0.03889 * 17 16 15 19 19 C 1.36071 * 119.47040 * 89.99700 * 10 9 7 20 20 C 1.55282 * 103.00430 * 218.39875 * 4 2 1 21 21 C 1.54905 * 101.53029 * 35.35966 * 20 4 2 22 22 N 1.47023 * 109.88034 * 121.01704 * 2 1 3 23 23 C 1.36943 * 125.64628 * 298.52844 * 22 2 1 24 24 H 1.07999 * 119.99997 * 0.02562 * 23 22 2 25 25 C 1.38816 * 119.99832 * 180.02562 * 23 22 2 26 26 N 1.31616 * 120.00113 * 0.02562 * 25 23 22 27 27 Si 1.86794 * 119.99740 * 180.02562 * 25 23 22 28 28 H 1.48500 * 109.47390 * 90.00350 * 27 25 23 29 29 H 1.48508 * 109.46962 * 210.00051 * 27 25 23 30 30 H 1.48501 * 109.47448 * 329.99970 * 27 25 23 31 31 H 1.09008 * 109.47282 * 300.43758 * 1 2 3 32 32 H 1.09003 * 109.47218 * 60.43851 * 1 2 3 33 33 H 1.09004 * 109.47562 * 180.44055 * 1 2 3 34 34 H 0.96997 * 120.00355 * 25.00009 * 6 4 2 35 35 H 1.09011 * 109.46606 * 299.99832 * 9 7 6 36 36 H 1.08995 * 109.47398 * 59.99178 * 9 7 6 37 37 H 1.08002 * 119.56811 * 359.97438 * 11 10 9 38 38 H 1.08001 * 120.19357 * 180.23384 * 12 11 10 39 39 H 1.07996 * 120.92407 * 359.94666 * 14 13 12 40 40 H 1.08000 * 120.03641 * 179.97438 * 15 14 13 41 41 H 1.08000 * 119.12716 * 180.02562 * 16 15 14 42 42 H 1.08003 * 120.12551 * 0.02562 * 19 10 9 43 43 H 1.09001 * 110.95548 * 277.33125 * 20 4 2 44 44 H 1.08996 * 111.09853 * 153.45188 * 20 4 2 45 45 H 1.09002 * 110.36692 * 204.23391 * 21 20 4 46 46 H 1.08995 * 110.36664 * 82.02192 * 21 20 4 47 47 H 0.97000 * 120.00077 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9006 1.0251 0.0000 4 6 2.0581 -0.7490 -1.2417 5 1 1.3103 -1.4473 -1.6178 6 7 2.4541 0.1969 -2.2880 7 6 2.4583 -0.1895 -3.5791 8 8 2.1348 -1.3204 -3.8747 9 6 2.8662 0.7832 -4.6554 10 6 2.7847 0.1079 -6.0001 11 6 3.9026 -0.5549 -6.5031 12 6 3.8592 -1.1793 -7.7121 13 6 2.6763 -1.1457 -8.4684 14 6 2.5920 -1.7737 -9.7254 15 6 1.4093 -1.7003 -10.4043 16 6 0.3295 -1.0176 -9.8480 17 7 0.4113 -0.4348 -8.6767 18 6 1.5398 -0.4689 -7.9608 19 6 1.6226 0.1598 -6.7060 20 6 3.2918 -1.5137 -0.6899 21 6 2.8176 -1.8763 0.7395 22 7 2.0300 -0.7124 1.1849 23 6 1.8015 -0.3544 2.4868 24 1 1.2078 0.5197 2.7103 25 6 2.3331 -1.1149 3.5193 26 7 3.0570 -2.1799 3.2470 27 14 2.0209 -0.6269 5.2951 28 1 0.7821 -1.2871 5.7795 29 1 3.1694 -1.0528 6.1347 30 1 1.8632 0.8471 5.3831 31 1 -0.3634 0.5206 0.8861 32 1 -0.3634 0.5070 -0.8939 33 1 -0.3634 -1.0276 0.0079 34 1 2.7132 1.1012 -2.0515 35 1 2.1969 1.6435 -4.6402 36 1 3.8888 1.1153 -4.4765 37 1 4.8143 -0.5769 -5.9245 38 1 4.7309 -1.6929 -8.0898 39 1 3.4392 -2.2986 -10.1415 40 1 1.3109 -2.1709 -11.3714 41 1 -0.5999 -0.9680 -10.3960 42 1 0.7670 0.6818 -6.3038 43 1 4.1690 -0.8674 -0.6584 44 1 3.4909 -2.4114 -1.2751 45 1 3.6742 -2.0285 1.3961 46 1 2.1942 -2.7700 0.7170 47 1 3.4288 -2.7111 3.9684 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001088655540.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:31:26 Heat of formation + Delta-G solvation = 42.381938 kcal Electronic energy + Delta-G solvation = -28208.221165 eV Core-core repulsion = 24356.291212 eV Total energy + Delta-G solvation = -3851.929953 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.07166 -39.73898 -37.91714 -37.08870 -34.00584 -33.87317 -32.40567 -31.83637 -30.39122 -30.33040 -28.93338 -27.79563 -24.80292 -24.23884 -23.99746 -23.02255 -22.29964 -20.61663 -20.15476 -19.61313 -18.10739 -17.24693 -17.07359 -16.96521 -16.71286 -15.78692 -15.17638 -14.84252 -14.71221 -14.55994 -14.45801 -14.13767 -13.90671 -13.76076 -13.37632 -13.29159 -13.11109 -12.79564 -12.31426 -12.15377 -11.94199 -11.79937 -11.65453 -11.58547 -11.55611 -11.14816 -10.87163 -10.83496 -10.76640 -10.56415 -10.42170 -10.10535 -9.76126 -9.72934 -9.68597 -9.55676 -8.87538 -8.68928 -8.59995 -8.43542 -6.88571 -5.66563 -3.09487 0.18626 0.58748 1.79290 2.64955 2.78603 3.38320 3.40297 3.44790 3.45974 3.93422 4.02041 4.32804 4.41518 4.47285 4.56055 4.62756 4.77270 4.83344 4.97257 5.04924 5.16602 5.24924 5.32217 5.34101 5.41449 5.54783 5.57371 5.62495 5.69573 5.74545 5.83069 5.87032 6.12269 6.13321 6.24803 6.27486 6.31478 6.32630 6.35416 6.53220 6.60572 6.63010 6.70770 6.87333 7.11479 7.51025 7.61447 7.69487 7.73120 7.84178 8.33388 8.42277 9.19474 9.80441 10.44329 11.36693 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.030326 B = 0.001986 C = 0.001943 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 923.080362 B =14094.086725 C =14406.267503 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.155 3.845 3 H 0.036 0.964 4 C 0.135 3.865 5 H 0.093 0.907 6 N -0.716 5.716 7 C 0.512 3.488 8 O -0.534 6.534 9 C -0.108 4.108 10 C -0.040 4.040 11 C -0.096 4.096 12 C -0.099 4.099 13 C -0.103 4.103 14 C -0.057 4.057 15 C -0.181 4.181 16 C 0.127 3.873 17 N -0.473 5.473 18 C 0.130 3.870 19 C -0.080 4.080 20 C -0.152 4.152 21 C 0.152 3.848 22 N -0.595 5.595 23 C -0.220 4.220 24 H 0.078 0.922 25 C -0.011 4.011 26 N -0.921 5.921 27 Si 0.914 3.086 28 H -0.289 1.289 29 H -0.291 1.291 30 H -0.282 1.282 31 H 0.054 0.946 32 H 0.038 0.962 33 H 0.051 0.949 34 H 0.398 0.602 35 H 0.105 0.895 36 H 0.106 0.894 37 H 0.128 0.872 38 H 0.131 0.869 39 H 0.137 0.863 40 H 0.136 0.864 41 H 0.158 0.842 42 H 0.134 0.866 43 H 0.061 0.939 44 H 0.060 0.940 45 H 0.109 0.891 46 H 0.014 0.986 47 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.727 5.459 -26.093 26.714 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.047 3.953 3 H 0.053 0.947 4 C 0.030 3.970 5 H 0.111 0.889 6 N -0.366 5.366 7 C 0.298 3.702 8 O -0.411 6.411 9 C -0.148 4.148 10 C -0.043 4.043 11 C -0.113 4.113 12 C -0.117 4.117 13 C -0.105 4.105 14 C -0.083 4.083 15 C -0.200 4.200 16 C -0.046 4.046 17 N -0.181 5.181 18 C 0.009 3.991 19 C -0.099 4.099 20 C -0.192 4.192 21 C 0.027 3.973 22 N -0.320 5.320 23 C -0.348 4.348 24 H 0.095 0.905 25 C -0.207 4.207 26 N -0.569 5.569 27 Si 0.745 3.255 28 H -0.217 1.217 29 H -0.217 1.217 30 H -0.207 1.207 31 H 0.073 0.927 32 H 0.057 0.943 33 H 0.070 0.930 34 H 0.232 0.768 35 H 0.124 0.876 36 H 0.124 0.876 37 H 0.146 0.854 38 H 0.148 0.852 39 H 0.155 0.845 40 H 0.154 0.846 41 H 0.175 0.825 42 H 0.152 0.848 43 H 0.080 0.920 44 H 0.079 0.921 45 H 0.127 0.873 46 H 0.032 0.968 47 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 0.870 5.043 -25.609 26.115 hybrid contribution 0.560 0.073 0.686 0.889 sum 1.430 5.116 -24.922 25.482 Atomic orbital electron populations 1.22239 0.97911 1.01394 0.99931 1.20996 0.92574 0.94784 0.86956 0.94692 1.22162 0.97647 0.90837 0.86339 0.88943 1.46057 1.68456 1.16066 1.06065 1.20345 0.77977 0.88636 0.83269 1.90737 1.47538 1.20516 1.82285 1.20776 1.04836 0.98432 0.90713 1.19042 0.93588 0.97212 0.94414 1.20806 0.98354 0.96568 0.95622 1.20911 0.96650 0.99381 0.94807 1.18850 0.95476 1.00205 0.95967 1.21471 0.98179 0.95775 0.92891 1.21864 0.94399 1.01948 1.01835 1.22946 0.98412 0.91997 0.91272 1.68025 1.25125 1.18228 1.06710 1.18802 0.88928 0.96608 0.94797 1.20592 0.97623 0.99245 0.92418 1.23404 0.96764 0.99273 0.99751 1.21945 0.97349 0.88414 0.89585 1.44492 1.59064 1.28417 1.00068 1.19021 1.26954 1.08302 0.80517 0.90455 1.24797 1.00372 0.97438 0.98077 1.69794 1.38927 1.18066 1.30139 0.86078 0.77251 0.77713 0.84468 1.21652 1.21682 1.20718 0.92707 0.94340 0.92982 0.76772 0.87632 0.87568 0.85407 0.85161 0.84500 0.84648 0.82523 0.84800 0.92028 0.92086 0.87328 0.96818 0.93698 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.89 9.15 37.16 0.34 -2.55 16 2 C 0.16 3.08 3.48 -66.95 -0.23 2.84 16 3 H 0.04 0.67 7.72 -51.93 -0.40 0.27 16 4 C 0.13 2.42 2.84 -66.03 -0.19 2.24 16 5 H 0.09 1.83 7.26 -51.93 -0.38 1.46 16 6 N -0.72 -9.95 5.19 -51.97 -0.27 -10.22 16 7 C 0.51 7.16 7.82 -10.99 -0.09 7.07 16 8 O -0.53 -9.86 15.68 5.55 0.09 -9.77 16 9 C -0.11 -1.02 5.80 -29.04 -0.17 -1.19 16 10 C -0.04 -0.45 4.34 -104.99 -0.46 -0.91 16 11 C -0.10 -0.98 9.59 -39.92 -0.38 -1.37 16 12 C -0.10 -0.96 9.78 -39.51 -0.39 -1.35 16 13 C -0.10 -1.13 5.74 -106.80 -0.61 -1.74 16 14 C -0.06 -0.48 9.90 -39.23 -0.39 -0.87 16 15 C -0.18 -1.36 10.03 -39.77 -0.40 -1.76 16 16 C 0.13 1.16 11.15 -17.46 -0.19 0.96 16 17 N -0.47 -5.90 10.34 -10.97 -0.11 -6.02 16 18 C 0.13 1.65 6.60 -84.86 -0.56 1.09 16 19 C -0.08 -0.99 9.58 -39.47 -0.38 -1.37 16 20 C -0.15 -2.99 6.79 -24.52 -0.17 -3.15 16 21 C 0.15 3.70 5.88 -2.53 -0.01 3.68 16 22 N -0.60 -14.73 3.13 -162.58 -0.51 -15.23 16 23 C -0.22 -5.93 9.87 -15.06 -0.15 -6.08 16 24 H 0.08 2.02 7.83 -52.49 -0.41 1.61 16 25 C -0.01 -0.31 5.49 -17.43 -0.10 -0.41 16 26 N -0.92 -26.57 10.09 55.49 0.56 -26.01 16 27 Si 0.91 21.82 29.55 -169.99 -5.02 16.79 16 28 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 29 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 30 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 31 H 0.05 1.05 8.02 -51.92 -0.42 0.63 16 32 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 34 H 0.40 4.41 8.37 -40.82 -0.34 4.07 16 35 H 0.11 0.77 8.07 -51.92 -0.42 0.35 16 36 H 0.11 0.74 8.08 -51.93 -0.42 0.32 16 37 H 0.13 1.08 8.06 -52.49 -0.42 0.65 16 38 H 0.13 0.90 8.06 -52.49 -0.42 0.48 16 39 H 0.14 0.74 8.06 -52.49 -0.42 0.32 16 40 H 0.14 0.58 8.06 -52.49 -0.42 0.16 16 41 H 0.16 0.93 8.06 -52.49 -0.42 0.51 16 42 H 0.13 1.55 8.06 -52.48 -0.42 1.13 16 43 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 44 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 45 H 0.11 2.95 5.87 -51.93 -0.30 2.64 16 46 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 47 H 0.25 7.08 8.31 -40.82 -0.34 6.74 16 LS Contribution 387.68 15.07 5.84 5.84 Total: -1.00 -34.35 387.68 -10.82 -45.17 By element: Atomic # 1 Polarization: 11.17 SS G_CDS: -6.88 Total: 4.29 kcal Atomic # 6 Polarization: -0.34 SS G_CDS: -4.52 Total: -4.85 kcal Atomic # 7 Polarization: -57.14 SS G_CDS: -0.33 Total: -57.47 kcal Atomic # 8 Polarization: -9.86 SS G_CDS: 0.09 Total: -9.77 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.02 Total: 16.79 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -34.35 -10.82 -45.17 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088655540.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.553 kcal (2) G-P(sol) polarization free energy of solvation -34.352 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.202 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.820 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.171 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.382 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds