Wall clock time and date at job start Tue Mar 31 2020 22:31:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08997 * 110.00535 * 2 1 4 4 C 1.54322 * 109.88188 * 238.89715 * 2 1 3 5 5 H 1.09003 * 110.71867 * 336.93617 * 4 2 1 6 6 N 1.46496 * 110.71848 * 100.02750 * 4 2 1 7 7 C 1.34777 * 120.00271 * 202.55776 * 6 4 2 8 8 O 1.21278 * 119.99854 * 0.02562 * 7 6 4 9 9 C 1.50703 * 120.00161 * 180.02562 * 7 6 4 10 10 C 1.50701 * 109.47064 * 180.02562 * 9 7 6 11 11 C 1.36248 * 120.26049 * 265.00118 * 10 9 7 12 12 C 1.39331 * 121.01987 * 179.97438 * 11 10 9 13 13 C 1.36200 * 121.08489 * 0.02562 * 12 11 10 14 14 C 1.40338 * 119.51513 * 359.97438 * 13 12 11 15 15 C 1.40442 * 122.07533 * 179.97438 * 14 13 12 16 16 N 1.31247 * 119.87628 * 180.02562 * 15 14 13 17 17 C 1.32615 * 122.77888 * 0.02562 * 16 15 14 18 18 C 1.36160 * 121.88429 * 359.97438 * 17 16 15 19 19 C 1.40187 * 120.25782 * 84.72460 * 10 9 7 20 20 C 1.55156 * 103.10360 * 218.47983 * 4 2 1 21 21 C 1.54906 * 101.58285 * 35.41710 * 20 4 2 22 22 N 1.47327 * 110.06146 * 121.16828 * 2 1 3 23 23 C 1.36929 * 125.61792 * 298.23998 * 22 2 1 24 24 H 1.08011 * 119.99886 * 359.84601 * 23 22 2 25 25 C 1.38817 * 120.00291 * 179.83883 * 23 22 2 26 26 N 1.31616 * 119.99764 * 0.02562 * 25 23 22 27 27 Si 1.86798 * 119.99954 * 180.02562 * 25 23 22 28 28 H 1.48502 * 109.47180 * 59.99847 * 27 25 23 29 29 H 1.48496 * 109.46845 * 180.02562 * 27 25 23 30 30 H 1.48497 * 109.46999 * 299.99836 * 27 25 23 31 31 H 1.08997 * 109.47424 * 181.10489 * 1 2 3 32 32 H 1.09007 * 109.46931 * 301.09856 * 1 2 3 33 33 H 1.08995 * 109.47038 * 61.09437 * 1 2 3 34 34 H 0.97005 * 120.00266 * 22.56359 * 6 4 2 35 35 H 1.09002 * 109.47152 * 60.00245 * 9 7 6 36 36 H 1.09001 * 109.46980 * 300.00345 * 9 7 6 37 37 H 1.08001 * 119.48980 * 359.97438 * 11 10 9 38 38 H 1.08002 * 119.45499 * 179.97438 * 12 11 10 39 39 H 1.08005 * 120.24583 * 179.97438 * 13 12 11 40 40 H 1.08000 * 120.06566 * 359.97438 * 15 14 13 41 41 H 1.07995 * 119.05092 * 179.97438 * 17 16 15 42 42 H 1.08003 * 120.66717 * 180.02562 * 18 17 16 43 43 H 1.09001 * 111.00213 * 153.48720 * 20 4 2 44 44 H 1.08998 * 111.00886 * 277.29880 * 20 4 2 45 45 H 1.09002 * 110.36838 * 81.82299 * 21 20 4 46 46 H 1.08997 * 110.37147 * 204.14888 * 21 20 4 47 47 H 0.97000 * 119.99653 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9029 1.0242 0.0000 4 6 2.0548 -0.7497 -1.2426 5 1 1.3038 -1.4438 -1.6199 6 7 2.4554 0.1958 -2.2875 7 6 2.5055 -0.2029 -3.5739 8 8 2.2185 -1.3443 -3.8666 9 6 2.9182 0.7696 -4.6487 10 6 2.8915 0.0792 -5.9880 11 6 4.0291 -0.4669 -6.5018 12 6 4.0223 -1.1092 -7.7382 13 6 2.8792 -1.2108 -8.4716 14 6 1.6877 -0.6604 -7.9747 15 6 0.4789 -0.7336 -8.6858 16 7 -0.6101 -0.2033 -8.1804 17 6 -0.6303 0.4132 -7.0064 18 6 0.4882 0.5375 -6.2399 19 6 1.6947 -0.0113 -6.7123 20 6 3.2869 -1.5179 -0.6956 21 6 2.8161 -1.8831 0.7342 22 7 2.0354 -0.7162 1.1841 23 6 1.8142 -0.3583 2.4872 24 1 1.2261 0.5188 2.7139 25 6 2.3456 -1.1228 3.5168 26 7 3.0626 -2.1914 3.2405 27 14 2.0432 -0.6349 5.2944 28 1 0.5832 -0.6330 5.5657 29 1 2.7134 -1.6067 6.1952 30 1 2.5932 0.7233 5.5353 31 1 -0.3634 -1.0274 0.0198 32 1 -0.3633 0.5308 0.8800 33 1 -0.3633 0.4967 -0.8996 34 1 2.6848 1.1088 -2.0534 35 1 3.9267 1.1296 -4.4452 36 1 2.2271 1.6124 -4.6609 37 1 4.9504 -0.4008 -5.9420 38 1 4.9389 -1.5328 -8.1216 39 1 2.8895 -1.7114 -9.4286 40 1 0.4455 -1.2247 -9.6471 41 1 -1.5606 0.8285 -6.6481 42 1 0.4492 1.0432 -5.2864 43 1 3.4810 -2.4146 -1.2841 44 1 4.1666 -0.8749 -0.6657 45 1 2.1879 -2.7736 0.7109 46 1 3.6742 -2.0403 1.3877 47 1 3.4343 -2.7254 3.9599 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001088662712.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:31:37 Heat of formation + Delta-G solvation = 43.127299 kcal Electronic energy + Delta-G solvation = -28785.611259 eV Core-core repulsion = 24933.713627 eV Total energy + Delta-G solvation = -3851.897631 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -41.18272 -39.66237 -37.87271 -37.29385 -34.09594 -33.99676 -32.09861 -31.52070 -30.75225 -30.38607 -28.89002 -27.65643 -24.71443 -24.31273 -24.00767 -23.78683 -21.78134 -20.46974 -20.16834 -19.55924 -18.24650 -17.31332 -17.02422 -16.93084 -16.74506 -15.84177 -15.36726 -14.83651 -14.81230 -14.47859 -14.41774 -14.05467 -13.96724 -13.79136 -13.48363 -13.39509 -12.87160 -12.83681 -12.40988 -12.20131 -12.14138 -11.97769 -11.81486 -11.60126 -11.23448 -11.17534 -10.87597 -10.85317 -10.57528 -10.44510 -10.33644 -10.14704 -9.80019 -9.70855 -9.68272 -9.56963 -9.23679 -8.71256 -8.63584 -8.21502 -6.90891 -5.68090 -3.11165 0.14593 0.72880 1.69621 2.73247 2.81702 3.34941 3.38154 3.42882 3.43952 3.91375 4.13888 4.25774 4.44280 4.45756 4.55203 4.65898 4.77747 4.87245 4.92141 5.02043 5.13767 5.17907 5.28006 5.39385 5.43339 5.51413 5.57389 5.57778 5.60592 5.78638 5.80168 5.83126 6.08511 6.14752 6.21741 6.26561 6.27419 6.31956 6.42202 6.50421 6.57214 6.61955 6.68265 6.83597 7.07901 7.48767 7.58700 7.68447 7.78030 7.82219 8.31241 8.37745 9.17638 9.78401 10.42351 11.35161 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.023474 B = 0.002341 C = 0.002212 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1192.499103 B =11956.390839 C =12654.941731 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.155 3.845 3 H 0.036 0.964 4 C 0.135 3.865 5 H 0.091 0.909 6 N -0.716 5.716 7 C 0.512 3.488 8 O -0.532 6.532 9 C -0.107 4.107 10 C -0.053 4.053 11 C -0.087 4.087 12 C -0.114 4.114 13 C -0.091 4.091 14 C -0.112 4.112 15 C 0.143 3.857 16 N -0.490 5.490 17 C 0.074 3.926 18 C -0.149 4.149 19 C -0.006 4.006 20 C -0.152 4.152 21 C 0.153 3.847 22 N -0.595 5.595 23 C -0.222 4.222 24 H 0.077 0.923 25 C -0.010 4.010 26 N -0.921 5.921 27 Si 0.915 3.085 28 H -0.285 1.285 29 H -0.290 1.290 30 H -0.285 1.285 31 H 0.051 0.949 32 H 0.054 0.946 33 H 0.037 0.963 34 H 0.398 0.602 35 H 0.107 0.893 36 H 0.103 0.897 37 H 0.127 0.873 38 H 0.127 0.873 39 H 0.132 0.868 40 H 0.162 0.838 41 H 0.152 0.848 42 H 0.134 0.866 43 H 0.060 0.940 44 H 0.061 0.939 45 H 0.014 0.986 46 H 0.109 0.891 47 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.272 7.064 -23.205 24.290 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.047 3.953 3 H 0.054 0.946 4 C 0.031 3.969 5 H 0.109 0.891 6 N -0.367 5.367 7 C 0.297 3.703 8 O -0.408 6.408 9 C -0.147 4.147 10 C -0.053 4.053 11 C -0.106 4.106 12 C -0.132 4.132 13 C -0.111 4.111 14 C -0.114 4.114 15 C -0.028 4.028 16 N -0.198 5.198 17 C -0.069 4.069 18 C -0.168 4.168 19 C -0.012 4.012 20 C -0.192 4.192 21 C 0.028 3.972 22 N -0.321 5.321 23 C -0.350 4.350 24 H 0.095 0.905 25 C -0.206 4.206 26 N -0.569 5.569 27 Si 0.745 3.255 28 H -0.212 1.212 29 H -0.216 1.216 30 H -0.212 1.212 31 H 0.071 0.929 32 H 0.073 0.927 33 H 0.056 0.944 34 H 0.232 0.768 35 H 0.125 0.875 36 H 0.122 0.878 37 H 0.145 0.855 38 H 0.145 0.855 39 H 0.150 0.850 40 H 0.179 0.821 41 H 0.169 0.831 42 H 0.152 0.848 43 H 0.079 0.921 44 H 0.080 0.920 45 H 0.032 0.968 46 H 0.127 0.873 47 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 0.249 6.175 -23.513 24.312 hybrid contribution 0.680 0.646 1.672 1.917 sum 0.929 6.820 -21.841 22.900 Atomic orbital electron populations 1.22230 0.97874 1.01453 0.99881 1.21048 0.92542 0.94769 0.86950 0.94621 1.22147 0.97612 0.90792 0.86349 0.89085 1.46084 1.68991 1.15137 1.06489 1.20329 0.77992 0.88810 0.83204 1.90737 1.48157 1.19768 1.82128 1.20721 1.04826 0.98357 0.90804 1.19037 0.92646 0.99151 0.94507 1.20854 0.98086 0.96099 0.95610 1.20877 0.98581 0.99088 0.94687 1.20952 0.91607 0.98549 0.99958 1.18993 0.96007 1.00957 0.95425 1.23175 0.86787 0.94286 0.98589 1.67410 1.30159 1.08957 1.13296 1.22144 0.98263 0.96261 0.90194 1.21898 0.92994 1.00965 1.00970 1.17928 0.93700 0.96125 0.93408 1.23385 0.96737 0.99285 0.99790 1.21947 0.97412 0.88330 0.89500 1.44558 1.59303 1.28143 1.00051 1.18976 1.27410 1.08064 0.80524 0.90522 1.24791 1.00369 0.97338 0.98069 1.69782 1.39101 1.17698 1.30361 0.86157 0.77662 0.77413 0.84274 1.21214 1.21576 1.21178 0.92945 0.92707 0.94355 0.76812 0.87521 0.87841 0.85531 0.85457 0.84995 0.82102 0.83069 0.84781 0.92092 0.92034 0.96835 0.87316 0.93618 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.82 9.15 37.16 0.34 -2.48 16 2 C 0.15 3.02 3.49 -66.79 -0.23 2.79 16 3 H 0.04 0.67 7.70 -51.93 -0.40 0.27 16 4 C 0.14 2.40 2.79 -66.10 -0.18 2.22 16 5 H 0.09 1.78 7.33 -51.93 -0.38 1.40 16 6 N -0.72 -9.74 5.19 -52.03 -0.27 -10.01 16 7 C 0.51 7.00 7.82 -10.98 -0.09 6.91 16 8 O -0.53 -9.65 15.72 5.56 0.09 -9.56 16 9 C -0.11 -1.01 5.28 -29.03 -0.15 -1.16 16 10 C -0.05 -0.58 4.38 -104.61 -0.46 -1.04 16 11 C -0.09 -0.86 9.58 -39.89 -0.38 -1.24 16 12 C -0.11 -0.99 9.94 -39.91 -0.40 -1.38 16 13 C -0.09 -0.79 9.81 -39.53 -0.39 -1.18 16 14 C -0.11 -1.21 5.74 -106.86 -0.61 -1.83 16 15 C 0.14 1.46 11.05 -16.97 -0.19 1.28 16 16 N -0.49 -5.85 10.30 -13.15 -0.14 -5.98 16 17 C 0.07 0.83 11.07 -17.96 -0.20 0.63 16 18 C -0.15 -1.67 9.36 -39.40 -0.37 -2.04 16 19 C -0.01 -0.08 5.75 -106.81 -0.61 -0.69 16 20 C -0.15 -2.98 6.77 -24.58 -0.17 -3.14 16 21 C 0.15 3.70 5.89 -2.53 -0.01 3.69 16 22 N -0.60 -14.61 3.14 -162.34 -0.51 -15.12 16 23 C -0.22 -5.95 9.91 -15.06 -0.15 -6.10 16 24 H 0.08 1.98 7.83 -52.48 -0.41 1.57 16 25 C -0.01 -0.28 5.49 -17.43 -0.10 -0.37 16 26 N -0.92 -26.47 10.09 55.49 0.56 -25.91 16 27 Si 0.91 21.69 29.55 -169.99 -5.02 16.67 16 28 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 29 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 30 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 31 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 32 H 0.05 1.03 8.06 -51.93 -0.42 0.61 16 33 H 0.04 0.59 8.14 -51.93 -0.42 0.16 16 34 H 0.40 4.30 8.34 -40.82 -0.34 3.96 16 35 H 0.11 0.74 8.05 -51.93 -0.42 0.33 16 36 H 0.10 0.75 6.79 -51.93 -0.35 0.40 16 37 H 0.13 1.01 8.05 -52.49 -0.42 0.59 16 38 H 0.13 0.77 8.06 -52.49 -0.42 0.34 16 39 H 0.13 0.74 8.06 -52.48 -0.42 0.32 16 40 H 0.16 1.09 8.06 -52.49 -0.42 0.67 16 41 H 0.15 1.33 8.06 -52.49 -0.42 0.90 16 42 H 0.13 1.29 6.64 -52.48 -0.35 0.94 16 43 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 44 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 45 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16 46 H 0.11 2.94 5.87 -51.93 -0.30 2.64 16 47 H 0.25 7.10 8.31 -40.82 -0.34 6.76 16 LS Contribution 384.48 15.07 5.79 5.79 Total: -1.00 -33.91 384.48 -10.58 -44.49 By element: Atomic # 1 Polarization: 11.51 SS G_CDS: -6.74 Total: 4.77 kcal Atomic # 6 Polarization: -0.79 SS G_CDS: -4.35 Total: -5.14 kcal Atomic # 7 Polarization: -56.67 SS G_CDS: -0.36 Total: -57.02 kcal Atomic # 8 Polarization: -9.65 SS G_CDS: 0.09 Total: -9.56 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.67 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -33.91 -10.58 -44.49 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088662712.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.620 kcal (2) G-P(sol) polarization free energy of solvation -33.908 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.712 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.584 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.493 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.127 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds