Wall clock time and date at job start Tue Mar 31 2020 22:31:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08997 * 110.00535 * 2 1 4 4 C 1.54322 * 109.88188 * 238.89715 * 2 1 3 5 5 H 1.09003 * 110.71867 * 336.93617 * 4 2 1 6 6 N 1.46496 * 110.71848 * 100.02750 * 4 2 1 7 7 C 1.34777 * 120.00271 * 202.55776 * 6 4 2 8 8 O 1.21278 * 119.99854 * 0.02562 * 7 6 4 9 9 C 1.50703 * 120.00161 * 180.02562 * 7 6 4 10 10 C 1.50701 * 109.47064 * 180.02562 * 9 7 6 11 11 C 1.36248 * 120.26049 * 265.00118 * 10 9 7 12 12 C 1.39331 * 121.01987 * 179.97438 * 11 10 9 13 13 C 1.36200 * 121.08489 * 0.02562 * 12 11 10 14 14 C 1.40338 * 119.51513 * 359.97438 * 13 12 11 15 15 C 1.40442 * 122.07533 * 179.97438 * 14 13 12 16 16 N 1.31247 * 119.87628 * 180.02562 * 15 14 13 17 17 C 1.32615 * 122.77888 * 0.02562 * 16 15 14 18 18 C 1.36160 * 121.88429 * 359.97438 * 17 16 15 19 19 C 1.40187 * 120.25782 * 84.72460 * 10 9 7 20 20 C 1.55156 * 103.10360 * 218.47983 * 4 2 1 21 21 C 1.54906 * 101.58285 * 35.41710 * 20 4 2 22 22 N 1.47327 * 110.06146 * 121.16828 * 2 1 3 23 23 C 1.36929 * 125.61792 * 298.23998 * 22 2 1 24 24 H 1.08011 * 119.99886 * 359.84601 * 23 22 2 25 25 C 1.38817 * 120.00291 * 179.83883 * 23 22 2 26 26 N 1.31616 * 119.99764 * 0.02562 * 25 23 22 27 27 Si 1.86798 * 119.99954 * 180.02562 * 25 23 22 28 28 H 1.48502 * 109.47180 * 59.99847 * 27 25 23 29 29 H 1.48496 * 109.46845 * 180.02562 * 27 25 23 30 30 H 1.48497 * 109.46999 * 299.99836 * 27 25 23 31 31 H 1.08997 * 109.47424 * 181.10489 * 1 2 3 32 32 H 1.09007 * 109.46931 * 301.09856 * 1 2 3 33 33 H 1.08995 * 109.47038 * 61.09437 * 1 2 3 34 34 H 0.97005 * 120.00266 * 22.56359 * 6 4 2 35 35 H 1.09002 * 109.47152 * 60.00245 * 9 7 6 36 36 H 1.09001 * 109.46980 * 300.00345 * 9 7 6 37 37 H 1.08001 * 119.48980 * 359.97438 * 11 10 9 38 38 H 1.08002 * 119.45499 * 179.97438 * 12 11 10 39 39 H 1.08005 * 120.24583 * 179.97438 * 13 12 11 40 40 H 1.08000 * 120.06566 * 359.97438 * 15 14 13 41 41 H 1.07995 * 119.05092 * 179.97438 * 17 16 15 42 42 H 1.08003 * 120.66717 * 180.02562 * 18 17 16 43 43 H 1.09001 * 111.00213 * 153.48720 * 20 4 2 44 44 H 1.08998 * 111.00886 * 277.29880 * 20 4 2 45 45 H 1.09002 * 110.36838 * 81.82299 * 21 20 4 46 46 H 1.08997 * 110.37147 * 204.14888 * 21 20 4 47 47 H 0.97000 * 119.99653 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9029 1.0242 0.0000 4 6 2.0548 -0.7497 -1.2426 5 1 1.3038 -1.4438 -1.6199 6 7 2.4554 0.1958 -2.2875 7 6 2.5055 -0.2029 -3.5739 8 8 2.2185 -1.3443 -3.8666 9 6 2.9182 0.7696 -4.6487 10 6 2.8915 0.0792 -5.9880 11 6 4.0291 -0.4669 -6.5018 12 6 4.0223 -1.1092 -7.7382 13 6 2.8792 -1.2108 -8.4716 14 6 1.6877 -0.6604 -7.9747 15 6 0.4789 -0.7336 -8.6858 16 7 -0.6101 -0.2033 -8.1804 17 6 -0.6303 0.4132 -7.0064 18 6 0.4882 0.5375 -6.2399 19 6 1.6947 -0.0113 -6.7123 20 6 3.2869 -1.5179 -0.6956 21 6 2.8161 -1.8831 0.7342 22 7 2.0354 -0.7162 1.1841 23 6 1.8142 -0.3583 2.4872 24 1 1.2261 0.5188 2.7139 25 6 2.3456 -1.1228 3.5168 26 7 3.0626 -2.1914 3.2405 27 14 2.0432 -0.6349 5.2944 28 1 0.5832 -0.6330 5.5657 29 1 2.7134 -1.6067 6.1952 30 1 2.5932 0.7233 5.5353 31 1 -0.3634 -1.0274 0.0198 32 1 -0.3633 0.5308 0.8800 33 1 -0.3633 0.4967 -0.8996 34 1 2.6848 1.1088 -2.0534 35 1 3.9267 1.1296 -4.4452 36 1 2.2271 1.6124 -4.6609 37 1 4.9504 -0.4008 -5.9420 38 1 4.9389 -1.5328 -8.1216 39 1 2.8895 -1.7114 -9.4286 40 1 0.4455 -1.2247 -9.6471 41 1 -1.5606 0.8285 -6.6481 42 1 0.4492 1.0432 -5.2864 43 1 3.4810 -2.4146 -1.2841 44 1 4.1666 -0.8749 -0.6657 45 1 2.1879 -2.7736 0.7109 46 1 3.6742 -2.0403 1.3877 47 1 3.4343 -2.7254 3.9599 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001088662712.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:31:36 Heat of formation + Delta-G solvation = 22.340793 kcal Electronic energy + Delta-G solvation = -28786.512629 eV Core-core repulsion = 24933.713627 eV Total energy + Delta-G solvation = -3852.799002 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.94277 -40.85320 -39.23732 -38.22773 -35.57724 -34.81468 -33.81968 -32.30085 -32.06677 -31.52775 -30.50638 -28.65334 -26.30328 -25.78035 -25.09751 -24.51969 -22.78609 -21.97375 -21.53874 -20.95729 -18.94788 -18.71813 -18.10803 -18.02307 -17.69122 -17.24776 -16.60536 -16.22205 -15.75845 -15.68045 -15.52858 -15.24292 -15.14529 -14.78126 -14.63637 -14.38163 -14.21771 -14.00563 -13.74473 -13.54969 -13.25120 -13.04159 -12.95327 -12.91215 -12.71754 -12.60958 -12.54770 -12.23869 -12.09784 -12.01572 -11.89802 -11.57933 -11.44761 -11.14707 -10.82463 -10.72290 -10.46010 -10.00064 -9.96805 -8.94065 -8.90498 -7.74837 -5.19935 -0.57266 -0.01946 0.95437 1.48100 1.50870 1.57025 1.67782 2.03934 2.29810 2.53192 3.14434 3.35624 3.44561 3.55417 3.57188 3.75929 3.85578 3.88465 3.95143 3.95954 4.02049 4.11824 4.21955 4.28235 4.37831 4.45922 4.49285 4.55123 4.61706 4.68986 4.77329 4.79790 4.86657 4.87816 4.94724 5.04513 5.11795 5.13979 5.15560 5.36241 5.47963 5.49501 5.54893 5.59018 5.64347 5.70575 5.79560 5.95421 6.30151 6.62180 7.01539 7.10881 7.31842 7.78754 8.42413 9.26914 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.023474 B = 0.002341 C = 0.002212 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1192.499103 B =11956.390839 C =12654.941731 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.151 3.849 3 H 0.057 0.943 4 C 0.154 3.846 5 H 0.072 0.928 6 N -0.705 5.705 7 C 0.514 3.486 8 O -0.578 6.578 9 C -0.096 4.096 10 C -0.077 4.077 11 C -0.093 4.093 12 C -0.122 4.122 13 C -0.090 4.090 14 C -0.133 4.133 15 C 0.141 3.859 16 N -0.517 5.517 17 C 0.059 3.941 18 C -0.161 4.161 19 C -0.029 4.029 20 C -0.137 4.137 21 C 0.158 3.842 22 N -0.614 5.614 23 C -0.227 4.227 24 H 0.086 0.914 25 C -0.070 4.070 26 N -0.952 5.952 27 Si 0.978 3.022 28 H -0.281 1.281 29 H -0.298 1.298 30 H -0.274 1.274 31 H 0.031 0.969 32 H 0.047 0.953 33 H 0.072 0.928 34 H 0.416 0.584 35 H 0.138 0.862 36 H 0.128 0.872 37 H 0.143 0.857 38 H 0.155 0.845 39 H 0.163 0.837 40 H 0.191 0.809 41 H 0.166 0.834 42 H 0.145 0.855 43 H 0.061 0.939 44 H 0.073 0.927 45 H -0.020 1.020 46 H 0.077 0.923 47 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.867 9.013 -24.854 26.504 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.044 3.956 3 H 0.074 0.926 4 C 0.048 3.952 5 H 0.090 0.910 6 N -0.357 5.357 7 C 0.302 3.698 8 O -0.458 6.458 9 C -0.135 4.135 10 C -0.077 4.077 11 C -0.112 4.112 12 C -0.140 4.140 13 C -0.109 4.109 14 C -0.135 4.135 15 C -0.030 4.030 16 N -0.226 5.226 17 C -0.083 4.083 18 C -0.181 4.181 19 C -0.034 4.034 20 C -0.177 4.177 21 C 0.032 3.968 22 N -0.340 5.340 23 C -0.356 4.356 24 H 0.104 0.896 25 C -0.262 4.262 26 N -0.602 5.602 27 Si 0.807 3.193 28 H -0.207 1.207 29 H -0.224 1.224 30 H -0.200 1.200 31 H 0.050 0.950 32 H 0.066 0.934 33 H 0.091 0.909 34 H 0.253 0.747 35 H 0.156 0.844 36 H 0.146 0.854 37 H 0.161 0.839 38 H 0.172 0.828 39 H 0.180 0.820 40 H 0.208 0.792 41 H 0.183 0.817 42 H 0.162 0.838 43 H 0.079 0.921 44 H 0.091 0.909 45 H -0.002 1.002 46 H 0.095 0.905 47 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 0.834 8.195 -25.190 26.503 hybrid contribution 0.508 0.005 2.079 2.140 sum 1.342 8.199 -23.111 24.559 Atomic orbital electron populations 1.22121 0.96706 1.00501 1.01269 1.21266 0.93338 0.95224 0.85753 0.92558 1.21638 0.95939 0.90904 0.86712 0.90952 1.45865 1.68826 1.15238 1.05751 1.21071 0.76457 0.88817 0.83481 1.90727 1.50102 1.22169 1.82758 1.20739 1.07074 0.97444 0.88284 1.19241 0.92794 1.00420 0.95260 1.21234 0.98458 0.95291 0.96195 1.21263 0.99707 0.98700 0.94346 1.21343 0.90784 0.97722 1.01063 1.19318 0.97082 1.01509 0.95569 1.23702 0.86308 0.93527 0.99468 1.67442 1.31099 1.10102 1.13933 1.22447 0.99059 0.96482 0.90309 1.22060 0.93047 1.01488 1.01500 1.18263 0.94301 0.96645 0.94233 1.23171 0.97875 0.99856 0.96750 1.21656 0.95684 0.87669 0.91781 1.44803 1.59791 1.28456 1.00905 1.19366 1.26500 1.07951 0.81770 0.89642 1.25618 1.00903 0.97705 1.01974 1.70039 1.40459 1.18863 1.30835 0.85148 0.77471 0.77168 0.79524 1.20696 1.22425 1.19971 0.94994 0.93356 0.90929 0.74693 0.84430 0.85431 0.83889 0.82782 0.81984 0.79209 0.81684 0.83752 0.92066 0.90856 1.00195 0.90458 0.94471 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.15 9.15 71.98 0.66 -4.50 16 2 C 0.15 5.69 3.49 45.28 0.16 5.85 16 3 H 0.06 1.94 7.70 -2.39 -0.02 1.92 16 4 C 0.15 5.30 2.79 46.18 0.13 5.43 16 5 H 0.07 2.82 7.33 -2.39 -0.02 2.80 16 6 N -0.70 -17.37 5.19 -436.93 -2.27 -19.64 16 7 C 0.51 12.97 7.82 87.66 0.69 13.65 16 8 O -0.58 -20.52 15.72 -3.02 -0.05 -20.57 16 9 C -0.10 -1.53 5.28 29.10 0.15 -1.37 16 10 C -0.08 -1.53 4.38 -19.85 -0.09 -1.62 16 11 C -0.09 -1.59 9.58 22.07 0.21 -1.38 16 12 C -0.12 -1.79 9.94 22.06 0.22 -1.57 16 13 C -0.09 -1.35 9.81 22.31 0.22 -1.13 16 14 C -0.13 -2.71 5.74 -21.31 -0.12 -2.83 16 15 C 0.14 2.73 11.05 85.32 0.94 3.67 16 16 N -0.52 -12.10 10.30 -195.53 -2.01 -14.11 16 17 C 0.06 1.30 11.07 84.09 0.93 2.23 16 18 C -0.16 -3.50 9.36 22.39 0.21 -3.29 16 19 C -0.03 -0.66 5.75 -21.28 -0.12 -0.78 16 20 C -0.14 -5.34 6.77 31.98 0.22 -5.12 16 21 C 0.16 7.89 5.89 86.85 0.51 8.40 16 22 N -0.61 -30.36 3.14 -667.53 -2.10 -32.45 16 23 C -0.23 -12.22 9.91 84.04 0.83 -11.38 16 24 H 0.09 4.34 7.83 -2.90 -0.02 4.32 16 25 C -0.07 -3.89 5.49 84.86 0.47 -3.43 16 26 N -0.95 -56.58 10.09 21.65 0.22 -56.36 16 27 Si 0.98 44.99 29.55 68.60 2.03 47.02 16 28 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 29 H -0.30 -13.95 7.11 99.48 0.71 -13.25 16 30 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 31 H 0.03 1.23 8.14 -2.39 -0.02 1.21 16 32 H 0.05 1.74 8.06 -2.38 -0.02 1.72 16 33 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 34 H 0.42 7.45 8.34 -92.70 -0.77 6.68 16 35 H 0.14 1.34 8.05 -2.39 -0.02 1.32 16 36 H 0.13 1.41 6.79 -2.39 -0.02 1.40 16 37 H 0.14 1.86 8.05 -2.91 -0.02 1.84 16 38 H 0.15 1.33 8.06 -2.91 -0.02 1.31 16 39 H 0.16 1.30 8.06 -2.91 -0.02 1.28 16 40 H 0.19 2.22 8.06 -2.91 -0.02 2.19 16 41 H 0.17 2.86 8.06 -2.91 -0.02 2.83 16 42 H 0.14 2.60 6.64 -2.91 -0.02 2.58 16 43 H 0.06 2.38 8.14 -2.39 -0.02 2.36 16 44 H 0.07 2.68 8.14 -2.39 -0.02 2.66 16 45 H -0.02 -1.10 8.14 -2.39 -0.02 -1.12 16 46 H 0.08 4.38 5.87 -2.39 -0.01 4.36 16 47 H 0.25 14.30 8.31 -92.71 -0.77 13.52 16 Total: -1.00 -76.70 384.48 2.25 -74.45 By element: Atomic # 1 Polarization: 20.61 SS G_CDS: 0.22 Total: 20.83 kcal Atomic # 6 Polarization: -5.38 SS G_CDS: 6.21 Total: 0.83 kcal Atomic # 7 Polarization: -116.40 SS G_CDS: -6.16 Total: -122.56 kcal Atomic # 8 Polarization: -20.52 SS G_CDS: -0.05 Total: -20.57 kcal Atomic # 14 Polarization: 44.99 SS G_CDS: 2.03 Total: 47.02 kcal Total: -76.70 2.25 -74.45 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088662712.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.787 kcal (2) G-P(sol) polarization free energy of solvation -76.697 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.090 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.251 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.447 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.341 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds