Wall clock time and date at job start Tue Mar 31 2020 22:31:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08999 * 109.99334 * 2 1 4 4 C 1.54323 * 109.88607 * 238.89934 * 2 1 3 5 5 H 1.09001 * 110.71562 * 336.92715 * 4 2 1 6 6 N 1.46497 * 110.72141 * 100.02404 * 4 2 1 7 7 C 1.34768 * 120.00158 * 202.28636 * 6 4 2 8 8 O 1.21284 * 120.00168 * 0.27283 * 7 6 4 9 9 C 1.50702 * 120.00178 * 180.27669 * 7 6 4 10 10 C 1.50699 * 109.47174 * 179.97438 * 9 7 6 11 11 C 1.39369 * 119.49139 * 269.72881 * 10 9 7 12 12 C 1.36179 * 121.08438 * 179.70606 * 11 10 9 13 13 C 1.40372 * 119.51701 * 0.56094 * 12 11 10 14 14 C 1.40428 * 122.08311 * 179.71896 * 13 12 11 15 15 N 1.31240 * 119.88400 * 180.02562 * 14 13 12 16 16 C 1.32609 * 122.77455 * 0.02562 * 15 14 13 17 17 C 1.36177 * 121.87974 * 359.96832 * 16 15 14 18 18 C 1.40691 * 118.66541 * 0.02562 * 17 16 15 19 19 C 1.36218 * 119.48913 * 89.99863 * 10 9 7 20 20 C 1.55155 * 103.10162 * 218.48035 * 4 2 1 21 21 C 1.54910 * 101.58575 * 35.40874 * 20 4 2 22 22 N 1.47321 * 110.06303 * 121.16406 * 2 1 3 23 23 C 1.36941 * 125.61722 * 298.25136 * 22 2 1 24 24 H 1.08002 * 119.99832 * 349.69094 * 23 22 2 25 25 C 1.38808 * 120.00173 * 169.69036 * 23 22 2 26 26 N 1.31620 * 119.99941 * 350.47919 * 25 23 22 27 27 Si 1.86795 * 120.00146 * 170.47446 * 25 23 22 28 28 H 1.48500 * 109.47392 * 94.13880 * 27 25 23 29 29 H 1.48501 * 109.47303 * 214.14044 * 27 25 23 30 30 H 1.48505 * 109.47257 * 334.13805 * 27 25 23 31 31 H 1.09002 * 109.46630 * 181.09967 * 1 2 3 32 32 H 1.08998 * 109.47741 * 301.09901 * 1 2 3 33 33 H 1.09004 * 109.46974 * 61.10290 * 1 2 3 34 34 H 0.97005 * 119.99850 * 22.56165 * 6 4 2 35 35 H 1.08993 * 109.46870 * 299.99758 * 9 7 6 36 36 H 1.08997 * 109.46870 * 59.99741 * 9 7 6 37 37 H 1.07998 * 119.46156 * 359.97438 * 11 10 9 38 38 H 1.08003 * 120.23951 * 180.25604 * 12 11 10 39 39 H 1.07998 * 120.05974 * 0.02562 * 14 13 12 40 40 H 1.07999 * 119.06024 * 179.97438 * 16 15 14 41 41 H 1.07999 * 120.66930 * 180.02562 * 17 16 15 42 42 H 1.08000 * 120.26146 * 359.97438 * 19 10 9 43 43 H 1.08998 * 111.00552 * 153.48578 * 20 4 2 44 44 H 1.09007 * 111.00169 * 277.29875 * 20 4 2 45 45 H 1.09001 * 110.36514 * 81.83100 * 21 20 4 46 46 H 1.08995 * 110.37103 * 204.15134 * 21 20 4 47 47 H 0.97006 * 119.99986 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9027 1.0243 0.0000 4 6 2.0550 -0.7496 -1.2426 5 1 1.3041 -1.4438 -1.6199 6 7 2.4556 0.1959 -2.2875 7 6 2.5110 -0.2044 -3.5732 8 8 2.2245 -1.3459 -3.8659 9 6 2.9291 0.7665 -4.6473 10 6 2.9090 0.0743 -5.9857 11 6 4.0590 -0.5653 -6.4447 12 6 4.0752 -1.2058 -7.6463 13 6 2.9188 -1.2128 -8.4420 14 6 2.8773 -1.8513 -9.6920 15 7 1.7729 -1.8305 -10.4006 16 6 0.6676 -1.2238 -9.9896 17 6 0.6049 -0.5765 -8.7932 18 6 1.7503 -0.5554 -7.9764 19 6 1.7686 0.0881 -6.7307 20 6 3.2870 -1.5178 -0.6955 21 6 2.8162 -1.8830 0.7344 22 7 2.0354 -0.7161 1.1841 23 6 1.8140 -0.3582 2.4873 24 1 1.3703 0.5994 2.7163 25 6 2.1599 -1.2262 3.5138 26 7 2.5238 -2.4605 3.2373 27 14 2.1090 -0.6425 5.2875 28 1 0.7961 -0.9930 5.8865 29 1 3.1955 -1.3007 6.0566 30 1 2.2949 0.8302 5.3295 31 1 -0.3633 -1.0275 0.0197 32 1 -0.3634 0.5308 0.8799 33 1 -0.3633 0.4966 -0.8997 34 1 2.6848 1.1089 -2.0534 35 1 2.2387 1.6097 -4.6635 36 1 3.9369 1.1261 -4.4397 37 1 4.9507 -0.5566 -5.8355 38 1 4.9728 -1.7006 -7.9869 39 1 3.7528 -2.3586 -10.0697 40 1 -0.2078 -1.2437 -10.6218 41 1 -0.3057 -0.0892 -8.4775 42 1 0.8856 0.5909 -6.3649 43 1 3.4812 -2.4145 -1.2839 44 1 4.1666 -0.8746 -0.6655 45 1 2.1881 -2.7735 0.7111 46 1 3.6743 -2.0400 1.3878 47 1 2.7658 -3.0670 3.9547 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001088742216.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:31:30 Heat of formation + Delta-G solvation = 38.387562 kcal Electronic energy + Delta-G solvation = -28201.018047 eV Core-core repulsion = 24348.914886 eV Total energy + Delta-G solvation = -3852.103162 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -41.09495 -39.79839 -38.03320 -37.23735 -34.03421 -33.35401 -32.84472 -31.98111 -30.42895 -30.03877 -29.04051 -27.92442 -24.83211 -24.15155 -24.01393 -23.06321 -22.44730 -20.68543 -20.18965 -19.63905 -18.05244 -17.37089 -17.00739 -16.84173 -16.72075 -15.84895 -15.25586 -15.07949 -14.79020 -14.49435 -14.45457 -14.03901 -13.94736 -13.83931 -13.66352 -13.41699 -12.93141 -12.83233 -12.33437 -12.21655 -12.10448 -11.99359 -11.91980 -11.59986 -11.29542 -11.14738 -10.95718 -10.79623 -10.61463 -10.44739 -10.43204 -10.09073 -9.88178 -9.79298 -9.73540 -9.65490 -9.11745 -8.72064 -8.59781 -8.29922 -6.87640 -5.78149 -3.11937 0.12707 0.65108 1.69792 2.72234 2.73604 3.35702 3.37516 3.43116 3.44561 3.86945 4.14210 4.24455 4.31837 4.45740 4.56204 4.60814 4.74573 4.84190 4.93084 5.04126 5.12430 5.22400 5.26795 5.35123 5.39696 5.46057 5.48438 5.55322 5.56606 5.78361 5.80302 5.82158 6.08487 6.10081 6.19653 6.25140 6.27446 6.30979 6.38803 6.47847 6.57497 6.59102 6.65142 6.85554 7.08188 7.46094 7.54962 7.67314 7.72055 7.74686 8.20840 8.35915 9.14409 9.76290 10.43054 11.34426 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.030109 B = 0.001977 C = 0.001943 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 929.717504 B =14161.736338 C =14406.389152 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.154 3.846 3 H 0.036 0.964 4 C 0.136 3.864 5 H 0.092 0.908 6 N -0.716 5.716 7 C 0.512 3.488 8 O -0.534 6.534 9 C -0.110 4.110 10 C -0.035 4.035 11 C -0.100 4.100 12 C -0.088 4.088 13 C -0.113 4.113 14 C 0.145 3.855 15 N -0.493 5.493 16 C 0.071 3.929 17 C -0.153 4.153 18 C -0.021 4.021 19 C -0.101 4.101 20 C -0.154 4.154 21 C 0.174 3.826 22 N -0.594 5.594 23 C -0.227 4.227 24 H 0.076 0.924 25 C -0.007 4.007 26 N -0.916 5.916 27 Si 0.910 3.090 28 H -0.289 1.289 29 H -0.290 1.290 30 H -0.281 1.281 31 H 0.052 0.948 32 H 0.054 0.946 33 H 0.036 0.964 34 H 0.398 0.602 35 H 0.105 0.895 36 H 0.106 0.894 37 H 0.127 0.873 38 H 0.134 0.866 39 H 0.162 0.838 40 H 0.151 0.849 41 H 0.137 0.863 42 H 0.130 0.870 43 H 0.062 0.938 44 H 0.061 0.939 45 H 0.028 0.972 46 H 0.072 0.928 47 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.947 7.770 -23.357 24.693 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.046 3.954 3 H 0.054 0.946 4 C 0.032 3.968 5 H 0.110 0.890 6 N -0.367 5.367 7 C 0.297 3.703 8 O -0.410 6.410 9 C -0.150 4.150 10 C -0.037 4.037 11 C -0.118 4.118 12 C -0.108 4.108 13 C -0.115 4.115 14 C -0.026 4.026 15 N -0.201 5.201 16 C -0.072 4.072 17 C -0.172 4.172 18 C -0.026 4.026 19 C -0.119 4.119 20 C -0.194 4.194 21 C 0.049 3.951 22 N -0.320 5.320 23 C -0.356 4.356 24 H 0.094 0.906 25 C -0.203 4.203 26 N -0.563 5.563 27 Si 0.741 3.259 28 H -0.216 1.216 29 H -0.216 1.216 30 H -0.206 1.206 31 H 0.071 0.929 32 H 0.073 0.927 33 H 0.055 0.945 34 H 0.232 0.768 35 H 0.123 0.877 36 H 0.124 0.876 37 H 0.145 0.855 38 H 0.152 0.848 39 H 0.179 0.821 40 H 0.169 0.831 41 H 0.155 0.845 42 H 0.148 0.852 43 H 0.081 0.919 44 H 0.080 0.920 45 H 0.046 0.954 46 H 0.090 0.910 47 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 1.591 6.464 -24.171 25.071 hybrid contribution -0.046 1.058 2.074 2.328 sum 1.545 7.522 -22.097 23.393 Atomic orbital electron populations 1.22224 0.97824 1.01516 0.99819 1.21078 0.92537 0.94806 0.86931 0.94637 1.22125 0.97449 0.90828 0.86421 0.88970 1.46082 1.68950 1.15102 1.06558 1.20336 0.77935 0.88767 0.83225 1.90742 1.48360 1.19786 1.82117 1.20802 1.04829 0.98322 0.91007 1.19147 0.93741 0.96637 0.94195 1.20806 0.98044 0.96959 0.96040 1.20926 0.97066 0.98509 0.94260 1.19034 0.94808 1.00683 0.96979 1.23191 0.95990 0.94012 0.89433 1.67412 0.99719 1.17575 1.35413 1.22144 0.95969 0.94433 0.94649 1.21915 0.98379 1.01326 0.95616 1.18124 0.93339 0.96417 0.94691 1.20772 0.97936 0.99879 0.93284 1.23386 0.96819 0.99432 0.99731 1.21404 0.95691 0.89389 0.88628 1.44576 1.58403 1.28873 1.00113 1.18953 1.36472 0.99750 0.80400 0.90629 1.24839 1.02102 0.95382 0.98024 1.69960 1.51148 1.04229 1.30933 0.86140 0.77293 0.77824 0.84683 1.21628 1.21629 1.20620 0.92901 0.92653 0.94469 0.76778 0.87719 0.87607 0.85483 0.84816 0.82079 0.83149 0.84531 0.85219 0.91906 0.92048 0.95350 0.91022 0.93645 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.83 9.15 37.16 0.34 -2.49 16 2 C 0.15 2.98 3.49 -66.79 -0.23 2.75 16 3 H 0.04 0.66 7.70 -51.93 -0.40 0.26 16 4 C 0.14 2.37 2.79 -66.10 -0.18 2.18 16 5 H 0.09 1.77 7.33 -51.93 -0.38 1.39 16 6 N -0.72 -9.44 5.19 -52.03 -0.27 -9.71 16 7 C 0.51 6.75 7.82 -10.99 -0.09 6.66 16 8 O -0.53 -9.43 15.72 5.55 0.09 -9.34 16 9 C -0.11 -0.95 5.80 -29.03 -0.17 -1.12 16 10 C -0.04 -0.36 4.34 -104.93 -0.46 -0.82 16 11 C -0.10 -0.96 9.58 -39.90 -0.38 -1.35 16 12 C -0.09 -0.80 9.81 -39.52 -0.39 -1.18 16 13 C -0.11 -1.17 5.74 -106.86 -0.61 -1.79 16 14 C 0.15 1.40 11.05 -16.98 -0.19 1.21 16 15 N -0.49 -5.41 10.30 -13.16 -0.14 -5.55 16 16 C 0.07 0.68 11.07 -17.96 -0.20 0.48 16 17 C -0.15 -1.44 9.88 -39.40 -0.39 -1.83 16 18 C -0.02 -0.22 5.75 -106.81 -0.61 -0.84 16 19 C -0.10 -1.04 9.42 -39.56 -0.37 -1.41 16 20 C -0.15 -2.93 6.77 -24.58 -0.17 -3.10 16 21 C 0.17 4.15 5.42 -2.53 -0.01 4.13 16 22 N -0.59 -14.46 3.14 -162.35 -0.51 -14.97 16 23 C -0.23 -6.09 9.88 -15.06 -0.15 -6.24 16 24 H 0.08 1.96 7.85 -52.49 -0.41 1.55 16 25 C -0.01 -0.18 5.40 -17.43 -0.09 -0.28 16 26 N -0.92 -26.47 10.69 55.49 0.59 -25.88 16 27 Si 0.91 21.61 29.56 -169.99 -5.03 16.59 16 28 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 29 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 30 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 31 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 32 H 0.05 1.05 8.06 -51.93 -0.42 0.63 16 33 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.40 4.12 8.34 -40.82 -0.34 3.78 16 35 H 0.10 0.66 8.07 -51.93 -0.42 0.24 16 36 H 0.11 0.67 8.07 -51.93 -0.42 0.25 16 37 H 0.13 1.01 8.06 -52.49 -0.42 0.58 16 38 H 0.13 0.83 8.06 -52.48 -0.42 0.40 16 39 H 0.16 1.05 8.06 -52.49 -0.42 0.62 16 40 H 0.15 1.05 8.06 -52.49 -0.42 0.62 16 41 H 0.14 0.95 8.06 -52.49 -0.42 0.53 16 42 H 0.13 1.12 8.06 -52.49 -0.42 0.70 16 43 H 0.06 1.18 8.14 -51.93 -0.42 0.75 16 44 H 0.06 1.11 8.14 -51.92 -0.42 0.69 16 45 H 0.03 0.74 8.07 -51.93 -0.42 0.32 16 46 H 0.07 1.89 6.94 -51.93 -0.36 1.53 16 47 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16 LS Contribution 388.73 15.07 5.86 5.86 Total: -1.00 -34.03 388.73 -10.69 -44.72 By element: Atomic # 1 Polarization: 10.21 SS G_CDS: -6.93 Total: 3.28 kcal Atomic # 6 Polarization: -0.65 SS G_CDS: -4.36 Total: -5.00 kcal Atomic # 7 Polarization: -55.79 SS G_CDS: -0.32 Total: -56.11 kcal Atomic # 8 Polarization: -9.43 SS G_CDS: 0.09 Total: -9.34 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.03 Total: 16.59 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -34.03 -10.69 -44.72 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088742216.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.112 kcal (2) G-P(sol) polarization free energy of solvation -34.034 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.078 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.690 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.725 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.388 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds