Wall clock time and date at job start Tue Mar 31 2020 22:31:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08999 * 109.99334 * 2 1 4 4 C 1.54323 * 109.88607 * 238.89934 * 2 1 3 5 5 H 1.09001 * 110.71562 * 336.92715 * 4 2 1 6 6 N 1.46497 * 110.72141 * 100.02404 * 4 2 1 7 7 C 1.34768 * 120.00158 * 202.28636 * 6 4 2 8 8 O 1.21284 * 120.00168 * 0.27283 * 7 6 4 9 9 C 1.50702 * 120.00178 * 180.27669 * 7 6 4 10 10 C 1.50699 * 109.47174 * 179.97438 * 9 7 6 11 11 C 1.39369 * 119.49139 * 269.72881 * 10 9 7 12 12 C 1.36179 * 121.08438 * 179.70606 * 11 10 9 13 13 C 1.40372 * 119.51701 * 0.56094 * 12 11 10 14 14 C 1.40428 * 122.08311 * 179.71896 * 13 12 11 15 15 N 1.31240 * 119.88400 * 180.02562 * 14 13 12 16 16 C 1.32609 * 122.77455 * 0.02562 * 15 14 13 17 17 C 1.36177 * 121.87974 * 359.96832 * 16 15 14 18 18 C 1.40691 * 118.66541 * 0.02562 * 17 16 15 19 19 C 1.36218 * 119.48913 * 89.99863 * 10 9 7 20 20 C 1.55155 * 103.10162 * 218.48035 * 4 2 1 21 21 C 1.54910 * 101.58575 * 35.40874 * 20 4 2 22 22 N 1.47321 * 110.06303 * 121.16406 * 2 1 3 23 23 C 1.36941 * 125.61722 * 298.25136 * 22 2 1 24 24 H 1.08002 * 119.99832 * 349.69094 * 23 22 2 25 25 C 1.38808 * 120.00173 * 169.69036 * 23 22 2 26 26 N 1.31620 * 119.99941 * 350.47919 * 25 23 22 27 27 Si 1.86795 * 120.00146 * 170.47446 * 25 23 22 28 28 H 1.48500 * 109.47392 * 94.13880 * 27 25 23 29 29 H 1.48501 * 109.47303 * 214.14044 * 27 25 23 30 30 H 1.48505 * 109.47257 * 334.13805 * 27 25 23 31 31 H 1.09002 * 109.46630 * 181.09967 * 1 2 3 32 32 H 1.08998 * 109.47741 * 301.09901 * 1 2 3 33 33 H 1.09004 * 109.46974 * 61.10290 * 1 2 3 34 34 H 0.97005 * 119.99850 * 22.56165 * 6 4 2 35 35 H 1.08993 * 109.46870 * 299.99758 * 9 7 6 36 36 H 1.08997 * 109.46870 * 59.99741 * 9 7 6 37 37 H 1.07998 * 119.46156 * 359.97438 * 11 10 9 38 38 H 1.08003 * 120.23951 * 180.25604 * 12 11 10 39 39 H 1.07998 * 120.05974 * 0.02562 * 14 13 12 40 40 H 1.07999 * 119.06024 * 179.97438 * 16 15 14 41 41 H 1.07999 * 120.66930 * 180.02562 * 17 16 15 42 42 H 1.08000 * 120.26146 * 359.97438 * 19 10 9 43 43 H 1.08998 * 111.00552 * 153.48578 * 20 4 2 44 44 H 1.09007 * 111.00169 * 277.29875 * 20 4 2 45 45 H 1.09001 * 110.36514 * 81.83100 * 21 20 4 46 46 H 1.08995 * 110.37103 * 204.15134 * 21 20 4 47 47 H 0.97006 * 119.99986 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9027 1.0243 0.0000 4 6 2.0550 -0.7496 -1.2426 5 1 1.3041 -1.4438 -1.6199 6 7 2.4556 0.1959 -2.2875 7 6 2.5110 -0.2044 -3.5732 8 8 2.2245 -1.3459 -3.8659 9 6 2.9291 0.7665 -4.6473 10 6 2.9090 0.0743 -5.9857 11 6 4.0590 -0.5653 -6.4447 12 6 4.0752 -1.2058 -7.6463 13 6 2.9188 -1.2128 -8.4420 14 6 2.8773 -1.8513 -9.6920 15 7 1.7729 -1.8305 -10.4006 16 6 0.6676 -1.2238 -9.9896 17 6 0.6049 -0.5765 -8.7932 18 6 1.7503 -0.5554 -7.9764 19 6 1.7686 0.0881 -6.7307 20 6 3.2870 -1.5178 -0.6955 21 6 2.8162 -1.8830 0.7344 22 7 2.0354 -0.7161 1.1841 23 6 1.8140 -0.3582 2.4873 24 1 1.3703 0.5994 2.7163 25 6 2.1599 -1.2262 3.5138 26 7 2.5238 -2.4605 3.2373 27 14 2.1090 -0.6425 5.2875 28 1 0.7961 -0.9930 5.8865 29 1 3.1955 -1.3007 6.0566 30 1 2.2949 0.8302 5.3295 31 1 -0.3633 -1.0275 0.0197 32 1 -0.3634 0.5308 0.8799 33 1 -0.3633 0.4966 -0.8997 34 1 2.6848 1.1089 -2.0534 35 1 2.2387 1.6097 -4.6635 36 1 3.9369 1.1261 -4.4397 37 1 4.9507 -0.5566 -5.8355 38 1 4.9728 -1.7006 -7.9869 39 1 3.7528 -2.3586 -10.0697 40 1 -0.2078 -1.2437 -10.6218 41 1 -0.3057 -0.0892 -8.4775 42 1 0.8856 0.5909 -6.3649 43 1 3.4812 -2.4145 -1.2839 44 1 4.1666 -0.8746 -0.6655 45 1 2.1881 -2.7735 0.7111 46 1 3.6743 -2.0400 1.3878 47 1 2.7658 -3.0670 3.9547 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001088742216.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:31:29 Heat of formation + Delta-G solvation = 17.514040 kcal Electronic energy + Delta-G solvation = -28201.923191 eV Core-core repulsion = 24348.914886 eV Total energy + Delta-G solvation = -3853.008306 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -41.80461 -40.93278 -39.32079 -38.23818 -35.53742 -34.09993 -33.86563 -33.41080 -32.06227 -30.81909 -30.52303 -28.95815 -26.37279 -25.81455 -24.87403 -23.89897 -23.15451 -22.19941 -21.52592 -21.13864 -18.74852 -18.67718 -18.13657 -17.96495 -17.59766 -17.16336 -16.59164 -16.10656 -15.87491 -15.75193 -15.54191 -15.20790 -15.05133 -14.79892 -14.66572 -14.35650 -14.32898 -13.98752 -13.84066 -13.54982 -13.20253 -12.94827 -12.92875 -12.84465 -12.75562 -12.68556 -12.55731 -12.24941 -12.07718 -11.93580 -11.92078 -11.61942 -11.51097 -11.14609 -10.91709 -10.67456 -10.46360 -9.96914 -9.86405 -8.98538 -8.86974 -7.85461 -5.20651 -0.55778 -0.07543 0.99938 1.47922 1.48616 1.58157 1.71423 1.96004 2.35486 2.54021 3.14320 3.34783 3.50890 3.57304 3.58711 3.65848 3.86433 3.90439 3.94069 3.94697 4.04716 4.14030 4.23552 4.27059 4.40055 4.50872 4.53230 4.63215 4.65138 4.67847 4.72718 4.81282 4.82154 4.88576 4.97409 5.05654 5.14609 5.15237 5.16522 5.38890 5.41156 5.48841 5.55658 5.56990 5.66670 5.71088 5.72315 5.92500 6.21346 6.65552 7.01883 7.08517 7.35292 7.77307 8.43483 9.26513 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.030109 B = 0.001977 C = 0.001943 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 929.717504 B =14161.736338 C =14406.389152 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.150 3.850 3 H 0.060 0.940 4 C 0.155 3.845 5 H 0.073 0.927 6 N -0.704 5.704 7 C 0.514 3.486 8 O -0.582 6.582 9 C -0.098 4.098 10 C -0.048 4.048 11 C -0.115 4.115 12 C -0.090 4.090 13 C -0.131 4.131 14 C 0.140 3.860 15 N -0.518 5.518 16 C 0.058 3.942 17 C -0.159 4.159 18 C -0.044 4.044 19 C -0.114 4.114 20 C -0.137 4.137 21 C 0.181 3.819 22 N -0.613 5.613 23 C -0.229 4.229 24 H 0.085 0.915 25 C -0.068 4.068 26 N -0.951 5.951 27 Si 0.975 3.025 28 H -0.290 1.290 29 H -0.297 1.297 30 H -0.265 1.265 31 H 0.028 0.972 32 H 0.046 0.954 33 H 0.072 0.928 34 H 0.417 0.583 35 H 0.136 0.864 36 H 0.137 0.863 37 H 0.143 0.857 38 H 0.160 0.840 39 H 0.188 0.812 40 H 0.171 0.829 41 H 0.157 0.843 42 H 0.142 0.858 43 H 0.063 0.937 44 H 0.077 0.923 45 H -0.009 1.009 46 H 0.038 0.962 47 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.325 10.420 -24.501 26.726 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.044 3.956 3 H 0.078 0.922 4 C 0.048 3.952 5 H 0.091 0.909 6 N -0.356 5.356 7 C 0.302 3.698 8 O -0.461 6.461 9 C -0.137 4.137 10 C -0.049 4.049 11 C -0.133 4.133 12 C -0.110 4.110 13 C -0.133 4.133 14 C -0.031 4.031 15 N -0.227 5.227 16 C -0.084 4.084 17 C -0.178 4.178 18 C -0.049 4.049 19 C -0.132 4.132 20 C -0.177 4.177 21 C 0.055 3.945 22 N -0.339 5.339 23 C -0.358 4.358 24 H 0.103 0.897 25 C -0.262 4.262 26 N -0.600 5.600 27 Si 0.804 3.196 28 H -0.218 1.218 29 H -0.224 1.224 30 H -0.189 1.189 31 H 0.047 0.953 32 H 0.065 0.935 33 H 0.091 0.909 34 H 0.254 0.746 35 H 0.154 0.846 36 H 0.155 0.845 37 H 0.161 0.839 38 H 0.177 0.823 39 H 0.204 0.796 40 H 0.188 0.812 41 H 0.174 0.826 42 H 0.160 0.840 43 H 0.081 0.919 44 H 0.095 0.905 45 H 0.009 0.991 46 H 0.057 0.943 47 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 1.962 9.191 -25.345 27.032 hybrid contribution -0.187 0.228 2.345 2.363 sum 1.775 9.418 -23.000 24.917 Atomic orbital electron populations 1.22119 0.96910 1.00352 1.01190 1.21303 0.93175 0.95405 0.85763 0.92223 1.21608 0.95833 0.90945 0.86774 0.90936 1.45852 1.68785 1.15205 1.05789 1.21120 0.76399 0.88788 0.83532 1.90739 1.50350 1.22250 1.82757 1.20833 1.07287 0.97459 0.88094 1.19409 0.93846 0.96845 0.94835 1.21119 0.98672 0.97009 0.96493 1.21264 0.97570 0.98124 0.93995 1.19312 0.95364 1.01071 0.97577 1.23638 0.96526 0.93721 0.89227 1.67447 1.00505 1.18497 1.36221 1.22537 0.96413 0.94269 0.95197 1.22170 0.98899 1.01340 0.95429 1.18470 0.94100 0.96971 0.95377 1.21004 0.98651 1.00211 0.93331 1.23177 0.98050 1.00075 0.96409 1.21116 0.93853 0.88541 0.90990 1.44830 1.58991 1.29091 1.00968 1.19345 1.34982 0.99824 0.81686 0.89722 1.25667 1.02863 0.95624 1.02000 1.70170 1.52941 1.05389 1.31510 0.85114 0.76619 0.78009 0.79869 1.21772 1.22386 1.18906 0.95257 0.93487 0.90885 0.74568 0.84625 0.84517 0.83892 0.82286 0.79566 0.81153 0.82554 0.84042 0.91860 0.90466 0.99114 0.94338 0.94472 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.14 9.15 71.98 0.66 -4.49 16 2 C 0.15 5.55 3.49 45.28 0.16 5.71 16 3 H 0.06 1.97 7.70 -2.39 -0.02 1.96 16 4 C 0.15 5.15 2.79 46.18 0.13 5.28 16 5 H 0.07 2.76 7.33 -2.39 -0.02 2.74 16 6 N -0.70 -16.26 5.19 -436.93 -2.27 -18.53 16 7 C 0.51 12.06 7.82 87.66 0.69 12.75 16 8 O -0.58 -19.77 15.72 -3.04 -0.05 -19.82 16 9 C -0.10 -1.30 5.80 29.10 0.17 -1.13 16 10 C -0.05 -0.85 4.34 -20.06 -0.09 -0.94 16 11 C -0.12 -1.96 9.58 22.06 0.21 -1.75 16 12 C -0.09 -1.48 9.81 22.31 0.22 -1.26 16 13 C -0.13 -2.60 5.74 -21.31 -0.12 -2.72 16 14 C 0.14 2.58 11.05 85.31 0.94 3.52 16 15 N -0.52 -11.08 10.30 -195.53 -2.01 -13.10 16 16 C 0.06 1.08 11.07 84.10 0.93 2.01 16 17 C -0.16 -2.87 9.88 22.39 0.22 -2.65 16 18 C -0.04 -0.92 5.75 -21.28 -0.12 -1.04 16 19 C -0.11 -2.17 9.42 22.28 0.21 -1.96 16 20 C -0.14 -5.17 6.77 31.99 0.22 -4.95 16 21 C 0.18 8.90 5.42 86.86 0.47 9.38 16 22 N -0.61 -29.95 3.14 -667.55 -2.10 -32.05 16 23 C -0.23 -12.27 9.88 84.03 0.83 -11.44 16 24 H 0.09 4.28 7.85 -2.91 -0.02 4.26 16 25 C -0.07 -3.82 5.40 84.86 0.46 -3.37 16 26 N -0.95 -57.06 10.69 21.65 0.23 -56.83 16 27 Si 0.98 44.89 29.56 68.60 2.03 46.91 16 28 H -0.29 -13.31 7.11 99.48 0.71 -12.61 16 29 H -0.30 -13.89 7.11 99.48 0.71 -13.18 16 30 H -0.26 -11.34 7.11 99.48 0.71 -10.63 16 31 H 0.03 1.14 8.14 -2.39 -0.02 1.12 16 32 H 0.05 1.71 8.06 -2.39 -0.02 1.69 16 33 H 0.07 2.03 8.14 -2.38 -0.02 2.01 16 34 H 0.42 6.73 8.34 -92.70 -0.77 5.96 16 35 H 0.14 1.02 8.07 -2.39 -0.02 1.00 16 36 H 0.14 1.04 8.07 -2.39 -0.02 1.02 16 37 H 0.14 1.86 8.06 -2.91 -0.02 1.84 16 38 H 0.16 1.61 8.06 -2.91 -0.02 1.59 16 39 H 0.19 2.16 8.06 -2.91 -0.02 2.14 16 40 H 0.17 2.22 8.06 -2.91 -0.02 2.19 16 41 H 0.16 1.99 8.06 -2.91 -0.02 1.96 16 42 H 0.14 2.17 8.06 -2.91 -0.02 2.15 16 43 H 0.06 2.37 8.14 -2.39 -0.02 2.35 16 44 H 0.08 2.66 8.14 -2.38 -0.02 2.64 16 45 H -0.01 -0.51 8.07 -2.39 -0.02 -0.53 16 46 H 0.04 2.12 6.94 -2.39 -0.02 2.10 16 47 H 0.25 14.43 8.31 -92.70 -0.77 13.66 16 Total: -1.00 -77.27 388.73 2.22 -75.05 By element: Atomic # 1 Polarization: 17.21 SS G_CDS: 0.21 Total: 17.42 kcal Atomic # 6 Polarization: -5.23 SS G_CDS: 6.18 Total: 0.94 kcal Atomic # 7 Polarization: -114.36 SS G_CDS: -6.15 Total: -120.50 kcal Atomic # 8 Polarization: -19.77 SS G_CDS: -0.05 Total: -19.82 kcal Atomic # 14 Polarization: 44.89 SS G_CDS: 2.03 Total: 46.91 kcal Total: -77.27 2.22 -75.05 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088742216.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.560 kcal (2) G-P(sol) polarization free energy of solvation -77.266 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.294 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.220 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.046 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.514 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds