Wall clock time and date at job start Tue Mar 31 2020 22:31:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09007 * 109.99547 * 2 1 4 4 C 1.54324 * 109.88319 * 238.90386 * 2 1 3 5 5 H 1.08997 * 110.86956 * 336.81926 * 4 2 1 6 6 N 1.46504 * 110.71856 * 100.02568 * 4 2 1 7 7 C 1.34774 * 119.99396 * 199.97758 * 6 4 2 8 8 O 1.21645 * 120.00657 * 0.02562 * 7 6 4 9 9 C 1.47140 * 119.99892 * 179.97438 * 7 6 4 10 10 C 1.36619 * 126.96960 * 0.02562 * 9 7 6 11 11 N 1.34707 * 108.68016 * 179.73706 * 10 9 7 12 12 H 0.97001 * 124.72366 * 180.26131 * 11 10 9 13 13 C 1.36218 * 110.54738 * 0.26712 * 11 10 9 14 14 C 1.35747 * 108.67823 * 359.97438 * 13 11 10 15 15 C 1.48281 * 126.97920 * 179.97438 * 14 13 11 16 16 C 1.39398 * 120.12422 * 129.69936 * 15 14 13 17 17 C 1.38001 * 119.86981 * 179.74501 * 16 15 14 18 18 C 1.38332 * 120.12499 * 0.51125 * 17 16 15 19 19 C 1.38331 * 120.25808 * 359.76855 * 18 17 16 20 20 C 1.38002 * 120.12353 * 359.97263 * 19 18 17 21 21 C 1.55157 * 102.94293 * 218.38779 * 4 2 1 22 22 C 1.54909 * 101.58215 * 35.50054 * 21 4 2 23 23 N 1.47021 * 109.88422 * 121.09126 * 2 1 3 24 24 C 1.36939 * 125.65091 * 298.39793 * 23 2 1 25 25 H 1.08001 * 119.99867 * 359.97438 * 24 23 2 26 26 C 1.38811 * 119.99661 * 179.97438 * 24 23 2 27 27 N 1.31614 * 120.00261 * 359.97438 * 26 24 23 28 28 Si 1.86801 * 119.99611 * 180.02562 * 26 24 23 29 29 H 1.48499 * 109.47438 * 59.99566 * 28 26 24 30 30 H 1.48502 * 109.47303 * 179.97438 * 28 26 24 31 31 H 1.48504 * 109.47171 * 299.99367 * 28 26 24 32 32 H 1.09000 * 109.46683 * 181.10303 * 1 2 3 33 33 H 1.08996 * 109.46688 * 301.09628 * 1 2 3 34 34 H 1.09000 * 109.47240 * 61.09817 * 1 2 3 35 35 H 0.96993 * 119.99989 * 19.97699 * 6 4 2 36 36 H 1.08002 * 125.66335 * 0.02562 * 10 9 7 37 37 H 1.08001 * 125.65874 * 179.97438 * 13 11 10 38 38 H 1.08002 * 120.06224 * 359.97438 * 16 15 14 39 39 H 1.07997 * 119.93842 * 180.25950 * 17 16 15 40 40 H 1.08001 * 119.86918 * 179.74376 * 18 17 16 41 41 H 1.08001 * 119.93525 * 179.97438 * 19 18 17 42 42 H 1.08001 * 120.06036 * 179.97438 * 20 19 18 43 43 H 1.09001 * 111.00587 * 153.57573 * 21 4 2 44 44 H 1.09003 * 111.00299 * 277.42508 * 21 4 2 45 45 H 1.09000 * 110.36981 * 81.82946 * 22 21 4 46 46 H 1.08998 * 110.36788 * 204.15399 * 22 21 4 47 47 H 0.97001 * 119.99581 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0244 0.0000 4 6 2.0549 -0.7495 -1.2427 5 1 1.3065 -1.4459 -1.6210 6 7 2.4555 0.1961 -2.2875 7 6 2.5559 -0.2160 -3.5668 8 8 2.3134 -1.3729 -3.8540 9 6 2.9577 0.7338 -4.6163 10 6 3.2607 2.0562 -4.4554 11 7 3.5851 2.5737 -5.6561 12 1 3.8434 3.4961 -5.8086 13 6 3.4997 1.6211 -6.6261 14 6 3.1121 0.4523 -6.0547 15 6 2.8929 -0.8451 -6.7383 16 6 3.4885 -2.0050 -6.2454 17 6 3.2767 -3.2106 -6.8826 18 6 2.4836 -3.2676 -8.0146 19 6 1.8947 -2.1189 -8.5117 20 6 2.0952 -0.9086 -7.8796 21 6 3.2877 -1.5142 -0.6924 22 6 2.8146 -1.8793 0.7368 23 7 2.0301 -0.7140 1.1839 24 6 1.8039 -0.3563 2.4863 25 1 1.2127 0.5192 2.7110 26 6 2.3344 -1.1190 3.5176 27 7 3.0544 -2.1862 3.2438 28 14 2.0253 -0.6314 5.2942 29 1 0.5645 -0.6336 5.5611 30 1 2.6944 -1.6018 6.1975 31 1 2.5707 0.7284 5.5365 32 1 -0.3633 -1.0275 0.0198 33 1 -0.3632 0.5308 0.8800 34 1 -0.3634 0.4967 -0.8997 35 1 2.6484 1.1187 -2.0586 36 1 3.2473 2.5960 -3.5200 37 1 3.7062 1.7709 -7.6755 38 1 4.1115 -1.9609 -5.3643 39 1 3.7342 -4.1106 -6.4993 40 1 2.3240 -4.2126 -8.5125 41 1 1.2768 -2.1693 -9.3961 42 1 1.6352 -0.0123 -8.2688 43 1 3.4853 -2.4110 -1.2796 44 1 4.1655 -0.8688 -0.6604 45 1 2.1888 -2.7714 0.7130 46 1 3.6717 -2.0337 1.3923 47 1 3.4248 -2.7193 3.9646 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001089039275.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:31:23 Heat of formation + Delta-G solvation = 63.493083 kcal Electronic energy + Delta-G solvation = -28869.022070 eV Core-core repulsion = 25018.007565 eV Total energy + Delta-G solvation = -3851.014505 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.35116 -39.12576 -38.70982 -37.28159 -33.89377 -32.54738 -32.06504 -30.82058 -30.42229 -30.09014 -28.58094 -28.23893 -24.90219 -23.95655 -22.96435 -22.75642 -22.19681 -20.32199 -19.96030 -19.78376 -19.05794 -18.54040 -16.73422 -16.51567 -16.16930 -15.56686 -15.06379 -15.00946 -14.65964 -14.50957 -14.03555 -13.94342 -13.79100 -13.61034 -13.32467 -13.27699 -12.98414 -12.81834 -12.67145 -12.14406 -12.07324 -11.88952 -11.51136 -11.12728 -11.10142 -10.96193 -10.82375 -10.79726 -10.43458 -10.32966 -10.09923 -9.70595 -9.61652 -9.50803 -9.28239 -8.77079 -8.70740 -8.63214 -8.40020 -8.07639 -6.84511 -5.62825 -3.05703 1.24588 1.57293 1.72296 2.36088 2.96748 3.40717 3.44712 3.46572 3.58241 3.74941 3.96686 4.50316 4.64677 4.83197 4.87859 5.01967 5.06885 5.17557 5.26480 5.40802 5.45339 5.48910 5.57915 5.61350 5.68107 5.71253 5.83068 5.90859 6.08751 6.17352 6.18379 6.32104 6.36598 6.39063 6.44247 6.54235 6.62640 6.63662 6.68750 6.73867 6.79417 6.80961 6.93628 7.12327 7.17239 7.22643 7.56991 7.64932 7.88687 7.94790 8.38083 8.67404 9.23178 9.84212 10.48701 11.40272 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.018080 B = 0.002573 C = 0.002381 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1548.267101 B =10880.692257 C =11755.462124 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.156 3.844 3 H 0.034 0.966 4 C 0.139 3.861 5 H 0.091 0.909 6 N -0.716 5.716 7 C 0.582 3.418 8 O -0.535 6.535 9 C -0.206 4.206 10 C 0.043 3.957 11 N -0.548 5.548 12 H 0.418 0.582 13 C -0.008 4.008 14 C -0.079 4.079 15 C -0.010 4.010 16 C -0.064 4.064 17 C -0.123 4.123 18 C -0.124 4.124 19 C -0.130 4.130 20 C -0.113 4.113 21 C -0.152 4.152 22 C 0.153 3.847 23 N -0.595 5.595 24 C -0.220 4.220 25 H 0.076 0.924 26 C -0.010 4.010 27 N -0.921 5.921 28 Si 0.914 3.086 29 H -0.286 1.286 30 H -0.290 1.290 31 H -0.286 1.286 32 H 0.052 0.948 33 H 0.053 0.947 34 H 0.038 0.962 35 H 0.392 0.608 36 H 0.174 0.826 37 H 0.171 0.829 38 H 0.122 0.878 39 H 0.119 0.881 40 H 0.116 0.884 41 H 0.117 0.883 42 H 0.116 0.884 43 H 0.061 0.939 44 H 0.060 0.940 45 H 0.014 0.986 46 H 0.108 0.892 47 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.922 8.762 -23.324 24.989 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.048 3.952 3 H 0.052 0.948 4 C 0.035 3.965 5 H 0.109 0.891 6 N -0.366 5.366 7 C 0.369 3.631 8 O -0.412 6.412 9 C -0.216 4.216 10 C -0.093 4.093 11 N -0.141 5.141 12 H 0.255 0.745 13 C -0.137 4.137 14 C -0.086 4.086 15 C -0.010 4.010 16 C -0.082 4.082 17 C -0.141 4.141 18 C -0.142 4.142 19 C -0.148 4.148 20 C -0.131 4.131 21 C -0.191 4.191 22 C 0.028 3.972 23 N -0.320 5.320 24 C -0.349 4.349 25 H 0.094 0.906 26 C -0.206 4.206 27 N -0.569 5.569 28 Si 0.744 3.256 29 H -0.213 1.213 30 H -0.216 1.216 31 H -0.212 1.212 32 H 0.071 0.929 33 H 0.072 0.928 34 H 0.057 0.943 35 H 0.226 0.774 36 H 0.191 0.809 37 H 0.188 0.812 38 H 0.140 0.860 39 H 0.137 0.863 40 H 0.134 0.866 41 H 0.135 0.865 42 H 0.134 0.866 43 H 0.080 0.920 44 H 0.079 0.921 45 H 0.032 0.968 46 H 0.126 0.874 47 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 1.838 7.956 -23.316 24.705 hybrid contribution -0.127 1.146 1.098 1.592 sum 1.711 9.101 -22.218 24.071 Atomic orbital electron populations 1.22239 0.97962 1.01450 0.99811 1.20979 0.92516 0.94692 0.87033 0.94832 1.22080 0.97475 0.90753 0.86214 0.89135 1.45919 1.70042 1.13649 1.07015 1.17321 0.77172 0.87135 0.81466 1.90792 1.50042 1.18431 1.81979 1.20535 1.13992 0.93421 0.93666 1.21925 1.03347 0.94256 0.89749 1.41392 1.53741 1.12100 1.06913 0.74512 1.21776 1.09453 0.88075 0.94347 1.19099 1.05933 0.92425 0.91133 1.18008 0.97493 0.91316 0.94226 1.21153 0.97896 0.91438 0.97761 1.21072 0.99333 0.97779 0.95918 1.21123 0.98077 0.98089 0.96888 1.20942 1.00771 0.92776 1.00318 1.21095 0.98715 0.97741 0.95578 1.23382 0.96788 0.99394 0.99584 1.21946 0.97274 0.88328 0.89656 1.44491 1.59247 1.28275 1.00032 1.18970 1.27134 1.08159 0.80587 0.90574 1.24782 1.00418 0.97406 0.97985 1.69793 1.39075 1.17803 1.30231 0.86173 0.77634 0.77372 0.84408 1.21258 1.21606 1.21236 0.92925 0.92831 0.94332 0.77396 0.80891 0.81166 0.86035 0.86276 0.86590 0.86500 0.86556 0.91988 0.92142 0.96830 0.87440 0.93668 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.93 9.14 37.16 0.34 -2.59 16 2 C 0.16 3.15 3.48 -66.95 -0.23 2.92 16 3 H 0.03 0.66 7.69 -51.93 -0.40 0.26 16 4 C 0.14 2.60 2.76 -66.09 -0.18 2.42 16 5 H 0.09 1.84 7.41 -51.93 -0.38 1.46 16 6 N -0.72 -10.92 5.19 -53.19 -0.28 -11.19 16 7 C 0.58 9.40 7.80 -12.65 -0.10 9.30 16 8 O -0.54 -10.47 13.76 5.24 0.07 -10.39 16 9 C -0.21 -2.68 6.29 -103.15 -0.65 -3.32 16 10 C 0.04 0.38 11.38 -16.87 -0.19 0.19 16 11 N -0.55 -3.64 5.88 -12.63 -0.07 -3.72 16 12 H 0.42 1.22 8.96 -40.82 -0.37 0.85 16 13 C -0.01 -0.07 11.80 -16.50 -0.19 -0.26 16 14 C -0.08 -0.98 5.79 -102.94 -0.60 -1.57 16 15 C -0.01 -0.13 5.41 -104.91 -0.57 -0.70 16 16 C -0.06 -0.92 7.93 -39.24 -0.31 -1.23 16 17 C -0.12 -1.57 10.03 -39.63 -0.40 -1.97 16 18 C -0.12 -1.40 10.04 -39.51 -0.40 -1.80 16 19 C -0.13 -1.41 10.03 -39.63 -0.40 -1.81 16 20 C -0.11 -1.31 9.72 -39.24 -0.38 -1.69 16 21 C -0.15 -3.09 6.77 -24.58 -0.17 -3.26 16 22 C 0.15 3.78 5.89 -2.53 -0.01 3.76 16 23 N -0.60 -14.91 3.13 -162.56 -0.51 -15.42 16 24 C -0.22 -6.00 9.89 -15.06 -0.15 -6.14 16 25 H 0.08 1.99 7.83 -52.49 -0.41 1.58 16 26 C -0.01 -0.29 5.49 -17.43 -0.10 -0.38 16 27 N -0.92 -26.77 10.09 55.49 0.56 -26.21 16 28 Si 0.91 21.92 29.55 -169.99 -5.02 16.89 16 29 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 30 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 31 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 32 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 33 H 0.05 1.03 8.04 -51.93 -0.42 0.61 16 34 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.39 4.87 7.25 -40.82 -0.30 4.58 16 36 H 0.17 1.05 7.44 -52.49 -0.39 0.66 16 37 H 0.17 0.96 8.06 -52.49 -0.42 0.54 16 38 H 0.12 1.89 7.46 -52.49 -0.39 1.50 16 39 H 0.12 1.34 8.06 -52.49 -0.42 0.92 16 40 H 0.12 1.04 8.06 -52.49 -0.42 0.61 16 41 H 0.12 0.97 8.06 -52.49 -0.42 0.55 16 42 H 0.12 1.10 8.06 -52.49 -0.42 0.67 16 43 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 44 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 45 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 46 H 0.11 2.96 5.88 -51.93 -0.31 2.66 16 47 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 LS Contribution 385.81 15.07 5.81 5.81 Total: -1.00 -34.26 385.81 -10.84 -45.10 By element: Atomic # 1 Polarization: 13.99 SS G_CDS: -6.72 Total: 7.26 kcal Atomic # 6 Polarization: -3.45 SS G_CDS: -4.68 Total: -8.13 kcal Atomic # 7 Polarization: -56.24 SS G_CDS: -0.30 Total: -56.54 kcal Atomic # 8 Polarization: -10.47 SS G_CDS: 0.07 Total: -10.39 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.89 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -34.26 -10.84 -45.10 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001089039275.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.593 kcal (2) G-P(sol) polarization free energy of solvation -34.256 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.337 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.844 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.100 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.493 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds