Wall clock time and date at job start Tue Mar 31 2020 22:31:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09007 * 109.99547 * 2 1 4 4 C 1.54324 * 109.88319 * 238.90386 * 2 1 3 5 5 H 1.08997 * 110.86956 * 336.81926 * 4 2 1 6 6 N 1.46504 * 110.71856 * 100.02568 * 4 2 1 7 7 C 1.34774 * 119.99396 * 199.97758 * 6 4 2 8 8 O 1.21645 * 120.00657 * 0.02562 * 7 6 4 9 9 C 1.47140 * 119.99892 * 179.97438 * 7 6 4 10 10 C 1.36619 * 126.96960 * 0.02562 * 9 7 6 11 11 N 1.34707 * 108.68016 * 179.73706 * 10 9 7 12 12 H 0.97001 * 124.72366 * 180.26131 * 11 10 9 13 13 C 1.36218 * 110.54738 * 0.26712 * 11 10 9 14 14 C 1.35747 * 108.67823 * 359.97438 * 13 11 10 15 15 C 1.48281 * 126.97920 * 179.97438 * 14 13 11 16 16 C 1.39398 * 120.12422 * 129.69936 * 15 14 13 17 17 C 1.38001 * 119.86981 * 179.74501 * 16 15 14 18 18 C 1.38332 * 120.12499 * 0.51125 * 17 16 15 19 19 C 1.38331 * 120.25808 * 359.76855 * 18 17 16 20 20 C 1.38002 * 120.12353 * 359.97263 * 19 18 17 21 21 C 1.55157 * 102.94293 * 218.38779 * 4 2 1 22 22 C 1.54909 * 101.58215 * 35.50054 * 21 4 2 23 23 N 1.47021 * 109.88422 * 121.09126 * 2 1 3 24 24 C 1.36939 * 125.65091 * 298.39793 * 23 2 1 25 25 H 1.08001 * 119.99867 * 359.97438 * 24 23 2 26 26 C 1.38811 * 119.99661 * 179.97438 * 24 23 2 27 27 N 1.31614 * 120.00261 * 359.97438 * 26 24 23 28 28 Si 1.86801 * 119.99611 * 180.02562 * 26 24 23 29 29 H 1.48499 * 109.47438 * 59.99566 * 28 26 24 30 30 H 1.48502 * 109.47303 * 179.97438 * 28 26 24 31 31 H 1.48504 * 109.47171 * 299.99367 * 28 26 24 32 32 H 1.09000 * 109.46683 * 181.10303 * 1 2 3 33 33 H 1.08996 * 109.46688 * 301.09628 * 1 2 3 34 34 H 1.09000 * 109.47240 * 61.09817 * 1 2 3 35 35 H 0.96993 * 119.99989 * 19.97699 * 6 4 2 36 36 H 1.08002 * 125.66335 * 0.02562 * 10 9 7 37 37 H 1.08001 * 125.65874 * 179.97438 * 13 11 10 38 38 H 1.08002 * 120.06224 * 359.97438 * 16 15 14 39 39 H 1.07997 * 119.93842 * 180.25950 * 17 16 15 40 40 H 1.08001 * 119.86918 * 179.74376 * 18 17 16 41 41 H 1.08001 * 119.93525 * 179.97438 * 19 18 17 42 42 H 1.08001 * 120.06036 * 179.97438 * 20 19 18 43 43 H 1.09001 * 111.00587 * 153.57573 * 21 4 2 44 44 H 1.09003 * 111.00299 * 277.42508 * 21 4 2 45 45 H 1.09000 * 110.36981 * 81.82946 * 22 21 4 46 46 H 1.08998 * 110.36788 * 204.15399 * 22 21 4 47 47 H 0.97001 * 119.99581 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0244 0.0000 4 6 2.0549 -0.7495 -1.2427 5 1 1.3065 -1.4459 -1.6210 6 7 2.4555 0.1961 -2.2875 7 6 2.5559 -0.2160 -3.5668 8 8 2.3134 -1.3729 -3.8540 9 6 2.9577 0.7338 -4.6163 10 6 3.2607 2.0562 -4.4554 11 7 3.5851 2.5737 -5.6561 12 1 3.8434 3.4961 -5.8086 13 6 3.4997 1.6211 -6.6261 14 6 3.1121 0.4523 -6.0547 15 6 2.8929 -0.8451 -6.7383 16 6 3.4885 -2.0050 -6.2454 17 6 3.2767 -3.2106 -6.8826 18 6 2.4836 -3.2676 -8.0146 19 6 1.8947 -2.1189 -8.5117 20 6 2.0952 -0.9086 -7.8796 21 6 3.2877 -1.5142 -0.6924 22 6 2.8146 -1.8793 0.7368 23 7 2.0301 -0.7140 1.1839 24 6 1.8039 -0.3563 2.4863 25 1 1.2127 0.5192 2.7110 26 6 2.3344 -1.1190 3.5176 27 7 3.0544 -2.1862 3.2438 28 14 2.0253 -0.6314 5.2942 29 1 0.5645 -0.6336 5.5611 30 1 2.6944 -1.6018 6.1975 31 1 2.5707 0.7284 5.5365 32 1 -0.3633 -1.0275 0.0198 33 1 -0.3632 0.5308 0.8800 34 1 -0.3634 0.4967 -0.8997 35 1 2.6484 1.1187 -2.0586 36 1 3.2473 2.5960 -3.5200 37 1 3.7062 1.7709 -7.6755 38 1 4.1115 -1.9609 -5.3643 39 1 3.7342 -4.1106 -6.4993 40 1 2.3240 -4.2126 -8.5125 41 1 1.2768 -2.1693 -9.3961 42 1 1.6352 -0.0123 -8.2688 43 1 3.4853 -2.4110 -1.2796 44 1 4.1655 -0.8688 -0.6604 45 1 2.1888 -2.7714 0.7130 46 1 3.6717 -2.0337 1.3923 47 1 3.4248 -2.7193 3.9646 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001089039275.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:31:22 Heat of formation + Delta-G solvation = 42.428107 kcal Electronic energy + Delta-G solvation = -28869.935516 eV Core-core repulsion = 25018.007565 eV Total energy + Delta-G solvation = -3851.927951 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -42.11506 -40.51762 -39.57818 -38.87449 -35.50627 -33.84217 -33.35960 -32.07895 -31.71900 -31.29576 -30.07501 -29.18540 -26.54527 -25.82321 -23.93873 -23.70033 -23.18747 -22.01475 -21.50140 -20.74984 -20.12713 -19.39973 -18.66984 -17.48889 -17.34556 -16.97989 -16.52556 -15.98694 -15.89261 -15.75558 -15.46642 -15.38027 -14.84862 -14.72367 -14.38905 -14.32557 -14.15047 -14.00624 -13.83367 -13.71013 -13.62137 -13.22386 -12.95612 -12.92444 -12.70302 -12.58817 -12.20678 -12.07517 -11.98534 -11.96218 -11.84327 -11.55544 -11.43037 -10.85455 -10.70739 -10.15545 -9.94628 -9.68161 -9.40106 -8.88863 -8.87467 -7.72933 -5.18349 0.35781 0.65006 0.88674 1.48788 1.52075 1.56989 1.58175 2.23085 2.45294 2.55859 2.64401 3.05627 3.37340 3.60451 3.88573 3.93803 4.00389 4.07043 4.18126 4.19536 4.24593 4.27111 4.37541 4.48501 4.50965 4.63903 4.68359 4.71897 4.75914 4.79451 4.83703 4.96585 5.05528 5.09690 5.16955 5.24443 5.28160 5.39801 5.51033 5.53320 5.60768 5.69504 5.72457 5.72944 5.81007 5.88460 5.97082 6.24268 6.31423 6.68617 6.79503 7.12180 7.48051 7.80335 8.44722 9.28973 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.018080 B = 0.002573 C = 0.002381 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1548.267101 B =10880.692257 C =11755.462124 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.153 3.847 3 H 0.056 0.944 4 C 0.158 3.842 5 H 0.071 0.929 6 N -0.704 5.704 7 C 0.579 3.421 8 O -0.580 6.580 9 C -0.252 4.252 10 C 0.071 3.929 11 N -0.526 5.526 12 H 0.441 0.559 13 C 0.016 3.984 14 C -0.120 4.120 15 C -0.022 4.022 16 C -0.093 4.093 17 C -0.141 4.141 18 C -0.131 4.131 19 C -0.129 4.129 20 C -0.118 4.118 21 C -0.137 4.137 22 C 0.160 3.840 23 N -0.613 5.613 24 C -0.227 4.227 25 H 0.087 0.913 26 C -0.071 4.071 27 N -0.952 5.952 28 Si 0.980 3.020 29 H -0.280 1.280 30 H -0.298 1.298 31 H -0.274 1.274 32 H 0.032 0.968 33 H 0.049 0.951 34 H 0.070 0.930 35 H 0.409 0.591 36 H 0.206 0.794 37 H 0.204 0.796 38 H 0.093 0.907 39 H 0.121 0.879 40 H 0.139 0.861 41 H 0.147 0.853 42 H 0.140 0.860 43 H 0.058 0.942 44 H 0.068 0.932 45 H -0.019 1.019 46 H 0.077 0.923 47 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.328 12.521 -25.441 28.386 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.047 3.953 3 H 0.073 0.927 4 C 0.052 3.948 5 H 0.089 0.911 6 N -0.356 5.356 7 C 0.369 3.631 8 O -0.460 6.460 9 C -0.262 4.262 10 C -0.067 4.067 11 N -0.121 5.121 12 H 0.283 0.717 13 C -0.114 4.114 14 C -0.126 4.126 15 C -0.023 4.023 16 C -0.111 4.111 17 C -0.159 4.159 18 C -0.149 4.149 19 C -0.147 4.147 20 C -0.136 4.136 21 C -0.177 4.177 22 C 0.034 3.966 23 N -0.339 5.339 24 C -0.356 4.356 25 H 0.105 0.895 26 C -0.263 4.263 27 N -0.602 5.602 28 Si 0.808 3.192 29 H -0.206 1.206 30 H -0.225 1.225 31 H -0.199 1.199 32 H 0.051 0.949 33 H 0.068 0.932 34 H 0.089 0.911 35 H 0.246 0.754 36 H 0.223 0.777 37 H 0.221 0.779 38 H 0.112 0.888 39 H 0.139 0.861 40 H 0.157 0.843 41 H 0.165 0.835 42 H 0.158 0.842 43 H 0.077 0.923 44 H 0.087 0.913 45 H -0.001 1.001 46 H 0.095 0.905 47 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 1.244 11.809 -25.474 28.105 hybrid contribution 0.063 0.026 1.658 1.660 sum 1.307 11.835 -23.816 26.626 Atomic orbital electron populations 1.22123 0.96657 1.00569 1.01204 1.21176 0.93391 0.95124 0.85654 0.92664 1.21602 0.95783 0.90839 0.86578 0.91070 1.45654 1.70037 1.13796 1.06115 1.17871 0.76077 0.87198 0.81933 1.90770 1.52035 1.20589 1.82617 1.20357 1.17912 0.94728 0.93227 1.22273 1.00241 0.92757 0.91417 1.41432 1.51838 1.12982 1.05832 0.71747 1.22156 1.06591 0.86863 0.95743 1.19299 1.08594 0.93361 0.91321 1.18274 0.97468 0.91623 0.94913 1.21091 0.99242 0.93023 0.97763 1.21257 1.00227 0.97535 0.96885 1.21422 0.97551 0.99602 0.96339 1.21358 1.00209 0.92242 1.00881 1.21411 0.98175 0.99028 0.95030 1.23168 0.97847 0.99781 0.96863 1.21642 0.95628 0.87755 0.91584 1.44729 1.59688 1.28524 1.00915 1.19376 1.26364 1.08138 0.81679 0.89523 1.25636 1.00868 0.97721 1.02030 1.70052 1.40408 1.18994 1.30789 0.85131 0.77486 0.77154 0.79424 1.20634 1.22464 1.19934 0.94906 0.93176 0.91142 0.75371 0.77705 0.77945 0.88830 0.86058 0.84296 0.83492 0.84170 0.92301 0.91297 1.00056 0.90489 0.94491 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.37 9.14 71.98 0.66 -4.71 16 2 C 0.15 6.08 3.48 45.34 0.16 6.24 16 3 H 0.06 2.00 7.69 -2.38 -0.02 1.98 16 4 C 0.16 5.94 2.76 46.18 0.13 6.07 16 5 H 0.07 2.99 7.41 -2.39 -0.02 2.97 16 6 N -0.70 -20.78 5.19 -440.43 -2.29 -23.07 16 7 C 0.58 18.77 7.80 86.58 0.68 19.45 16 8 O -0.58 -23.80 13.76 -4.17 -0.06 -23.86 16 9 C -0.25 -6.21 6.29 -18.91 -0.12 -6.33 16 10 C 0.07 1.00 11.38 83.87 0.95 1.95 16 11 N -0.53 -4.62 5.88 -193.89 -1.14 -5.76 16 12 H 0.44 0.17 8.96 -92.71 -0.83 -0.67 16 13 C 0.02 0.22 11.80 83.43 0.98 1.20 16 14 C -0.12 -2.79 5.79 -18.77 -0.11 -2.90 16 15 C -0.02 -0.59 5.41 -20.05 -0.11 -0.70 16 16 C -0.09 -2.85 7.93 22.49 0.18 -2.67 16 17 C -0.14 -3.83 10.03 22.24 0.22 -3.60 16 18 C -0.13 -2.91 10.04 22.31 0.22 -2.69 16 19 C -0.13 -2.58 10.03 22.24 0.22 -2.35 16 20 C -0.12 -2.56 9.72 22.49 0.22 -2.34 16 21 C -0.14 -5.76 6.77 31.99 0.22 -5.55 16 22 C 0.16 8.28 5.89 86.85 0.51 8.79 16 23 N -0.61 -31.18 3.13 -668.23 -2.09 -33.27 16 24 C -0.23 -12.40 9.89 84.03 0.83 -11.57 16 25 H 0.09 4.45 7.83 -2.91 -0.02 4.43 16 26 C -0.07 -3.98 5.49 84.86 0.47 -3.52 16 27 N -0.95 -57.51 10.09 21.65 0.22 -57.29 16 28 Si 0.98 45.49 29.55 68.60 2.03 47.52 16 29 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 30 H -0.30 -14.11 7.11 99.48 0.71 -13.40 16 31 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 32 H 0.03 1.31 8.14 -2.39 -0.02 1.29 16 33 H 0.05 1.86 8.04 -2.39 -0.02 1.84 16 34 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 35 H 0.41 9.10 7.25 -92.71 -0.67 8.43 16 36 H 0.21 1.45 7.44 -2.91 -0.02 1.43 16 37 H 0.20 1.33 8.06 -2.91 -0.02 1.30 16 38 H 0.09 3.27 7.46 -2.91 -0.02 3.24 16 39 H 0.12 3.01 8.06 -2.91 -0.02 2.98 16 40 H 0.14 2.32 8.06 -2.91 -0.02 2.29 16 41 H 0.15 1.97 8.06 -2.91 -0.02 1.95 16 42 H 0.14 2.24 8.06 -2.91 -0.02 2.22 16 43 H 0.06 2.49 8.14 -2.39 -0.02 2.47 16 44 H 0.07 2.77 8.14 -2.39 -0.02 2.75 16 45 H -0.02 -1.06 8.14 -2.39 -0.02 -1.08 16 46 H 0.08 4.49 5.88 -2.39 -0.01 4.48 16 47 H 0.25 14.50 8.31 -92.71 -0.77 13.73 16 Total: -1.00 -79.98 385.81 2.48 -77.50 By element: Atomic # 1 Polarization: 23.97 SS G_CDS: -0.50 Total: 23.47 kcal Atomic # 6 Polarization: -11.56 SS G_CDS: 6.31 Total: -5.24 kcal Atomic # 7 Polarization: -114.09 SS G_CDS: -5.30 Total: -119.39 kcal Atomic # 8 Polarization: -23.80 SS G_CDS: -0.06 Total: -23.86 kcal Atomic # 14 Polarization: 45.49 SS G_CDS: 2.03 Total: 47.52 kcal Total: -79.98 2.48 -77.50 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001089039275.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.926 kcal (2) G-P(sol) polarization free energy of solvation -79.980 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.947 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.481 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.498 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.428 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds