Wall clock time and date at job start Tue Mar 31 2020 22:45:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09000 * 110.63983 * 2 1 4 4 C 1.54328 * 110.87343 * 236.75078 * 2 1 3 5 5 N 1.47017 * 107.27004 * 219.37450 * 4 2 1 6 6 C 1.36940 * 125.64992 * 178.99748 * 5 4 2 7 7 H 1.07998 * 120.00377 * 179.97438 * 6 5 4 8 8 C 1.38817 * 119.99524 * 359.97438 * 6 5 4 9 9 N 1.31614 * 120.00181 * 359.97438 * 8 6 5 10 10 Si 1.86803 * 119.99756 * 180.02562 * 8 6 5 11 11 H 1.48502 * 109.47287 * 89.99682 * 10 8 6 12 12 H 1.48502 * 109.46830 * 209.99596 * 10 8 6 13 13 H 1.48500 * 109.47008 * 329.99410 * 10 8 6 14 14 C 1.47471 * 108.72469 * 358.97425 * 5 4 2 15 15 C 1.54907 * 104.80775 * 24.07279 * 14 5 4 16 16 H 1.09003 * 111.00787 * 81.13659 * 15 14 5 17 17 C 1.52999 * 111.00197 * 204.94702 * 15 14 5 18 18 N 1.46505 * 109.47331 * 290.41636 * 17 15 14 19 19 C 1.34775 * 119.99951 * 179.97438 * 18 17 15 20 20 O 1.21565 * 120.00246 * 0.02562 * 19 18 17 21 21 C 1.47753 * 119.99950 * 180.02562 * 19 18 17 22 22 C 1.40606 * 120.27333 * 359.97438 * 21 19 18 23 23 N 1.30797 * 121.54614 * 180.02562 * 22 21 19 24 24 C 1.33820 * 121.72150 * 359.95141 * 23 22 21 25 25 C 1.40517 * 120.83434 * 179.97438 * 24 23 22 26 26 C 1.36136 * 119.81794 * 180.02562 * 25 24 23 27 27 C 1.39345 * 121.09097 * 0.02562 * 26 25 24 28 28 C 1.36132 * 120.82631 * 359.97438 * 27 26 25 29 29 C 1.40538 * 119.62289 * 0.02562 * 28 27 26 30 30 C 1.39015 * 120.27301 * 180.02562 * 21 19 18 31 31 H 1.08993 * 109.47344 * 296.85576 * 1 2 3 32 32 H 1.09003 * 109.46783 * 56.86418 * 1 2 3 33 33 H 1.08998 * 109.46780 * 176.85579 * 1 2 3 34 34 H 1.08998 * 109.88237 * 338.78949 * 4 2 1 35 35 H 1.09001 * 109.87813 * 99.80092 * 4 2 1 36 36 H 0.97002 * 120.00031 * 180.02562 * 9 8 6 37 37 H 1.08997 * 110.34989 * 265.25481 * 14 5 4 38 38 H 1.09001 * 110.40500 * 142.91702 * 14 5 4 39 39 H 1.09002 * 109.47234 * 170.42100 * 17 15 14 40 40 H 1.09004 * 109.47328 * 50.42130 * 17 15 14 41 41 H 0.97000 * 119.99621 * 0.02562 * 18 17 15 42 42 H 1.08003 * 119.22513 * 0.02562 * 22 21 19 43 43 H 1.08004 * 120.09126 * 0.06877 * 25 24 23 44 44 H 1.07997 * 119.45524 * 180.28115 * 26 25 24 45 45 H 1.07995 * 119.58374 * 179.97438 * 27 26 25 46 46 H 1.08002 * 120.18719 * 180.02562 * 28 27 26 47 47 H 1.07999 * 121.01516 * 0.02562 * 30 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9143 1.0200 0.0000 4 6 2.0799 -0.7906 -1.2059 5 7 3.2494 -1.5470 -0.7353 6 6 4.0128 -2.3916 -1.4964 7 1 4.8557 -2.9028 -1.0554 8 6 3.7030 -2.5906 -2.8349 9 7 2.6755 -1.9680 -3.3722 10 14 4.7439 -3.7432 -3.8730 11 1 4.1868 -5.1177 -3.7963 12 1 4.7336 -3.2830 -5.2848 13 1 6.1386 -3.7452 -3.3631 14 6 3.4652 -1.2455 0.6920 15 6 2.0789 -0.7934 1.2151 16 1 1.4465 -1.6526 1.4387 17 6 2.2236 0.1111 2.4406 18 7 2.7018 -0.6796 3.5775 19 6 2.9045 -0.0886 4.7716 20 8 2.6902 1.1005 4.9056 21 6 3.3873 -0.8859 5.9181 22 6 3.6365 -2.2617 5.7698 23 7 4.0637 -2.9912 6.7679 24 6 4.2860 -2.4663 7.9786 25 6 4.7445 -3.2675 9.0379 26 6 4.9633 -2.7120 10.2613 27 6 4.7395 -1.3551 10.4859 28 6 4.2954 -0.5463 9.4850 29 6 4.0589 -1.0860 8.2091 30 6 3.5979 -0.2822 7.1525 31 1 -0.3633 0.4642 0.9168 32 1 -0.3633 0.5618 -0.8606 33 1 -0.3633 -1.0261 -0.0564 34 1 1.3191 -1.4773 -1.5770 35 1 2.3750 -0.1017 -1.9974 36 1 2.4588 -2.1074 -4.3074 37 1 4.1933 -0.4422 0.8039 38 1 3.7985 -2.1374 1.2227 39 1 1.2561 0.5498 2.6846 40 1 2.9383 0.9050 2.2239 41 1 2.8731 -1.6284 3.4705 42 1 3.4713 -2.7271 4.8093 43 1 4.9236 -4.3211 8.8818 44 1 5.3201 -3.3323 11.0702 45 1 4.9207 -0.9399 11.4662 46 1 4.1258 0.5041 9.6704 47 1 3.4134 0.7723 7.2949 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001093006372.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:45:28 Heat of formation + Delta-G solvation = 17.720854 kcal Electronic energy + Delta-G solvation = -28040.340213 eV Core-core repulsion = 24187.340875 eV Total energy + Delta-G solvation = -3852.999337 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -42.03036 -40.70559 -39.54628 -37.92253 -36.14300 -34.71667 -34.51190 -32.53453 -32.11454 -31.07641 -30.49375 -27.87471 -26.87490 -25.56779 -25.11983 -24.20522 -23.11651 -22.22113 -21.59730 -20.86703 -19.39983 -18.92931 -18.68037 -18.25458 -17.11609 -16.92376 -16.50879 -16.46912 -15.88206 -15.63597 -15.55467 -15.34819 -15.21077 -14.78536 -14.65655 -14.44847 -14.39000 -14.13313 -14.08471 -13.43366 -13.28733 -13.09842 -12.84554 -12.77643 -12.73991 -12.68462 -12.45118 -12.38056 -11.94386 -11.83791 -11.62640 -11.60046 -11.48895 -11.36770 -11.15460 -10.69476 -10.54969 -10.20447 -9.83448 -9.31166 -8.87983 -7.83744 -5.19008 -0.83304 -0.43955 0.82782 1.45943 1.47567 1.49325 1.56093 2.02635 2.20652 2.49872 3.04916 3.13626 3.34128 3.52417 3.56001 3.60860 3.67812 3.76883 3.82196 3.94620 3.95735 3.98118 4.21629 4.31275 4.38209 4.43086 4.51788 4.61526 4.69817 4.74051 4.78238 4.84353 4.86797 4.94173 4.98277 5.04622 5.10386 5.16498 5.30988 5.34731 5.37905 5.40839 5.45890 5.47986 5.48769 5.73500 5.83538 5.83690 6.21696 6.41571 6.74411 7.07001 7.11965 7.79689 8.43938 9.26367 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.016031 B = 0.002222 C = 0.002001 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1746.147911 B =12596.107251 C =13987.221737 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.101 4.101 3 H 0.075 0.925 4 C 0.192 3.808 5 N -0.629 5.629 6 C -0.240 4.240 7 H 0.083 0.917 8 C -0.068 4.068 9 N -0.951 5.951 10 Si 0.977 3.023 11 H -0.285 1.285 12 H -0.296 1.296 13 H -0.270 1.270 14 C 0.136 3.864 15 C -0.092 4.092 16 H 0.091 0.909 17 C 0.145 3.855 18 N -0.709 5.709 19 C 0.567 3.433 20 O -0.573 6.573 21 C -0.206 4.206 22 C 0.159 3.841 23 N -0.497 5.497 24 C 0.118 3.882 25 C -0.121 4.121 26 C -0.078 4.078 27 C -0.115 4.115 28 C -0.092 4.092 29 C -0.128 4.128 30 C 0.013 3.987 31 H 0.077 0.923 32 H 0.053 0.947 33 H 0.048 0.952 34 H 0.016 0.984 35 H -0.001 1.001 36 H 0.246 0.754 37 H 0.018 0.982 38 H 0.049 0.951 39 H 0.081 0.919 40 H 0.062 0.938 41 H 0.411 0.589 42 H 0.179 0.821 43 H 0.143 0.857 44 H 0.164 0.836 45 H 0.164 0.836 46 H 0.156 0.844 47 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.567 1.651 29.710 29.761 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.121 4.121 3 H 0.093 0.907 4 C 0.067 3.933 5 N -0.355 5.355 6 C -0.369 4.369 7 H 0.100 0.900 8 C -0.261 4.261 9 N -0.600 5.600 10 Si 0.805 3.195 11 H -0.212 1.212 12 H -0.223 1.223 13 H -0.195 1.195 14 C 0.011 3.989 15 C -0.111 4.111 16 H 0.109 0.891 17 C 0.021 3.979 18 N -0.361 5.361 19 C 0.355 3.645 20 O -0.454 6.454 21 C -0.212 4.212 22 C -0.015 4.015 23 N -0.204 5.204 24 C -0.002 4.002 25 C -0.139 4.139 26 C -0.097 4.097 27 C -0.133 4.133 28 C -0.111 4.111 29 C -0.130 4.130 30 C -0.013 4.013 31 H 0.095 0.905 32 H 0.072 0.928 33 H 0.067 0.933 34 H 0.034 0.966 35 H 0.017 0.983 36 H 0.055 0.945 37 H 0.036 0.964 38 H 0.068 0.932 39 H 0.099 0.901 40 H 0.081 0.919 41 H 0.249 0.751 42 H 0.196 0.804 43 H 0.160 0.840 44 H 0.181 0.819 45 H 0.181 0.819 46 H 0.173 0.827 47 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges 0.625 1.486 29.551 29.595 hybrid contribution 0.412 -0.151 -1.551 1.612 sum 1.037 1.335 28.000 28.051 Atomic orbital electron populations 1.21644 0.92957 1.01680 1.02237 1.22315 0.96986 0.98606 0.94149 0.90656 1.20974 0.88058 0.91980 0.92308 1.44801 1.32507 1.51394 1.06829 1.19457 1.07729 1.17821 0.91911 0.89952 1.25650 0.99908 1.02307 0.98270 1.70189 1.30355 1.47104 1.12327 0.85100 0.78501 0.78279 0.77586 1.21161 1.22292 1.19480 1.21791 0.95124 0.97592 0.84440 1.22491 0.97067 0.98439 0.93145 0.89080 1.21235 1.00108 0.93224 0.83335 1.45873 1.66868 1.13788 1.09535 1.18119 0.77036 0.86540 0.82832 1.90758 1.53667 1.16416 1.84543 1.20858 1.08836 0.96002 0.95457 1.23313 0.90720 0.89169 0.98317 1.67983 1.13531 1.38904 0.99993 1.19458 0.96961 0.91444 0.92383 1.21071 1.00342 1.00706 0.91814 1.21443 0.95571 0.95900 0.96833 1.21410 0.97701 0.93550 1.00628 1.21412 0.97416 1.01721 0.90510 1.19045 1.03465 0.94153 0.96366 1.22160 0.88269 1.00868 0.90028 0.90452 0.92789 0.93311 0.96586 0.98287 0.94503 0.96420 0.93236 0.90120 0.91931 0.75135 0.80427 0.83962 0.81886 0.81876 0.82656 0.82204 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.70 9.17 71.98 0.66 -3.04 16 2 C -0.10 -3.51 3.01 -9.60 -0.03 -3.54 16 3 H 0.08 2.53 8.04 -2.39 -0.02 2.51 16 4 C 0.19 9.38 4.97 86.73 0.43 9.81 16 5 N -0.63 -31.97 3.40 -691.88 -2.35 -34.32 16 6 C -0.24 -13.43 10.28 84.03 0.86 -12.57 16 7 H 0.08 4.39 7.83 -2.91 -0.02 4.36 16 8 C -0.07 -3.92 5.49 84.86 0.47 -3.46 16 9 N -0.95 -57.58 10.31 21.65 0.22 -57.36 16 10 Si 0.98 46.06 29.55 68.60 2.03 48.09 16 11 H -0.28 -13.13 7.11 99.48 0.71 -12.43 16 12 H -0.30 -14.12 7.11 99.48 0.71 -13.41 16 13 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 14 C 0.14 5.22 6.56 86.85 0.57 5.79 16 15 C -0.09 -2.81 2.51 -9.40 -0.02 -2.83 16 16 H 0.09 2.67 8.05 -2.39 -0.02 2.65 16 17 C 0.14 3.74 5.12 86.38 0.44 4.18 16 18 N -0.71 -16.42 5.40 -466.04 -2.52 -18.93 16 19 C 0.57 14.55 7.77 86.76 0.67 15.23 16 20 O -0.57 -18.24 16.38 -3.92 -0.06 -18.31 16 21 C -0.21 -4.61 5.89 -20.00 -0.12 -4.73 16 22 C 0.16 3.36 10.68 85.42 0.91 4.28 16 23 N -0.50 -11.63 10.30 -187.68 -1.93 -13.56 16 24 C 0.12 2.47 6.61 40.27 0.27 2.74 16 25 C -0.12 -1.88 9.97 22.34 0.22 -1.66 16 26 C -0.08 -0.74 9.94 22.05 0.22 -0.53 16 27 C -0.12 -0.98 9.96 22.05 0.22 -0.76 16 28 C -0.09 -1.12 9.77 22.34 0.22 -0.90 16 29 C -0.13 -2.39 5.74 -21.29 -0.12 -2.51 16 30 C 0.01 0.27 9.46 23.02 0.22 0.49 16 31 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 32 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 33 H 0.05 1.47 8.07 -2.39 -0.02 1.45 16 34 H 0.02 0.87 7.02 -2.39 -0.02 0.86 16 35 H 0.00 -0.06 7.50 -2.39 -0.02 -0.08 16 36 H 0.25 14.51 8.31 -92.71 -0.77 13.74 16 37 H 0.02 0.70 7.96 -2.39 -0.02 0.69 16 38 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 39 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 40 H 0.06 1.77 8.04 -2.38 -0.02 1.76 16 41 H 0.41 7.92 6.46 -92.71 -0.60 7.32 16 42 H 0.18 2.91 6.37 -2.91 -0.02 2.89 16 43 H 0.14 1.96 8.06 -2.91 -0.02 1.94 16 44 H 0.16 0.49 8.06 -2.91 -0.02 0.47 16 45 H 0.16 0.31 8.06 -2.91 -0.02 0.29 16 46 H 0.16 1.12 8.06 -2.91 -0.02 1.10 16 47 H 0.16 2.88 7.70 -2.91 -0.02 2.86 16 Total: -1.00 -75.67 385.71 1.86 -73.81 By element: Atomic # 1 Polarization: 14.21 SS G_CDS: 0.39 Total: 14.60 kcal Atomic # 6 Polarization: -0.11 SS G_CDS: 6.09 Total: 5.98 kcal Atomic # 7 Polarization: -117.59 SS G_CDS: -6.58 Total: -124.17 kcal Atomic # 8 Polarization: -18.24 SS G_CDS: -0.06 Total: -18.31 kcal Atomic # 14 Polarization: 46.06 SS G_CDS: 2.03 Total: 48.09 kcal Total: -75.67 1.86 -73.81 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001093006372.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.526 kcal (2) G-P(sol) polarization free energy of solvation -75.667 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.859 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.862 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.805 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.721 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds