Wall clock time and date at job start Tue Mar 31 2020 22:45:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09000 * 110.91442 * 2 1 4 4 C 1.55124 * 111.16116 * 236.07795 * 2 1 3 5 5 N 1.47428 * 104.94166 * 205.13215 * 4 2 1 6 6 C 1.36939 * 125.64516 * 203.97117 * 5 4 2 7 7 H 1.07998 * 119.99678 * 180.02562 * 6 5 4 8 8 C 1.38812 * 120.00014 * 0.03421 * 6 5 4 9 9 N 1.31622 * 120.00020 * 0.02562 * 8 6 5 10 10 Si 1.86806 * 119.99956 * 180.02562 * 8 6 5 11 11 H 1.48499 * 109.46955 * 59.99845 * 10 8 6 12 12 H 1.48494 * 109.46949 * 179.97438 * 10 8 6 13 13 H 1.48503 * 109.46705 * 299.99914 * 10 8 6 14 14 C 1.47022 * 108.70473 * 23.99759 * 5 4 2 15 15 C 1.54324 * 107.27060 * 358.94319 * 14 5 4 16 16 H 1.09002 * 110.71835 * 96.34420 * 15 14 5 17 17 C 1.52994 * 110.72247 * 219.43832 * 15 14 5 18 18 N 1.46493 * 109.47331 * 291.16438 * 17 15 14 19 19 C 1.34782 * 120.00237 * 179.97438 * 18 17 15 20 20 O 1.21566 * 119.99726 * 359.97438 * 19 18 17 21 21 C 1.47769 * 120.00389 * 179.97438 * 19 18 17 22 22 C 1.40656 * 119.69704 * 359.97438 * 21 19 18 23 23 C 1.35846 * 120.87560 * 180.02562 * 22 21 19 24 24 C 1.40398 * 119.84963 * 0.02562 * 23 22 21 25 25 C 1.40635 * 121.98786 * 179.97438 * 24 23 22 26 26 C 1.36221 * 118.73252 * 180.30011 * 25 24 23 27 27 N 1.32601 * 121.90126 * 359.42297 * 26 25 24 28 28 C 1.31240 * 122.73976 * 0.59327 * 27 26 25 29 29 C 1.40551 * 119.88083 * 359.70652 * 28 27 26 30 30 C 1.38563 * 119.70172 * 180.02562 * 21 19 18 31 31 H 1.09003 * 109.47152 * 296.09146 * 1 2 3 32 32 H 1.08996 * 109.47424 * 56.09381 * 1 2 3 33 33 H 1.09009 * 109.47084 * 176.10009 * 1 2 3 34 34 H 1.08993 * 110.42140 * 86.19817 * 4 2 1 35 35 H 1.09006 * 110.20617 * 323.94676 * 4 2 1 36 36 H 0.97002 * 119.99927 * 180.02562 * 9 8 6 37 37 H 1.08992 * 109.88127 * 239.52727 * 14 5 4 38 38 H 1.08996 * 110.00936 * 118.43202 * 14 5 4 39 39 H 1.09001 * 109.47250 * 171.15882 * 17 15 14 40 40 H 1.09009 * 109.46970 * 51.16181 * 17 15 14 41 41 H 0.97005 * 120.00259 * 359.97438 * 18 17 15 42 42 H 1.08002 * 119.56275 * 0.02562 * 22 21 19 43 43 H 1.08000 * 120.07689 * 179.97438 * 23 22 21 44 44 H 1.08002 * 120.63083 * 0.02562 * 25 24 23 45 45 H 1.08000 * 119.04819 * 179.71693 * 26 25 24 46 46 H 1.07999 * 120.05975 * 179.68553 * 28 27 26 47 47 H 1.07998 * 120.34287 * 359.95288 * 30 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9191 1.0182 0.0000 4 6 2.0900 -0.8073 -1.2004 5 7 3.4298 -1.2474 -0.7707 6 6 4.4675 -1.5739 -1.6025 7 1 5.4142 -1.8867 -1.1875 8 6 4.3024 -1.5029 -2.9789 9 7 3.1487 -1.1211 -3.4846 10 14 5.7177 -1.9491 -4.1136 11 1 6.1199 -3.3581 -3.8727 12 1 5.2879 -1.7920 -5.5263 13 1 6.8702 -1.0522 -3.8436 14 6 3.4672 -1.2781 0.6988 15 6 2.0862 -0.8079 1.2021 16 1 1.4452 -1.6614 1.4228 17 6 2.2350 0.0874 2.4338 18 7 2.7031 -0.7145 3.5668 19 6 2.9075 -0.1329 4.7654 20 8 2.7038 1.0573 4.9060 21 6 3.3791 -0.9418 5.9085 22 6 3.6122 -2.3185 5.7388 23 6 4.0454 -3.0849 6.7734 24 6 4.2648 -2.5014 8.0314 25 6 4.7124 -3.2522 9.1331 26 6 4.8975 -2.6194 10.3251 27 7 4.6788 -1.3196 10.4698 28 6 4.2609 -0.5565 9.4873 29 6 4.0332 -1.1127 8.2168 30 6 3.5867 -0.3376 7.1381 31 1 -0.3633 0.4520 0.9230 32 1 -0.3634 0.5732 -0.8529 33 1 -0.3634 -1.0254 -0.0699 34 1 2.1641 -0.1732 -2.0838 35 1 1.4546 -1.6695 -1.4035 36 1 3.0333 -1.0717 -4.4464 37 1 4.2434 -0.6057 1.0639 38 1 3.6625 -2.2927 1.0457 39 1 1.2706 0.5330 2.6777 40 1 2.9573 0.8766 2.2242 41 1 2.8660 -1.6641 3.4546 42 1 3.4446 -2.7723 4.7732 43 1 4.2199 -4.1409 6.6288 44 1 4.9014 -4.3112 9.0370 45 1 5.2366 -3.1920 11.1757 46 1 4.0919 0.4970 9.6548 47 1 3.4063 0.7198 7.2637 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001093110996.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:45:43 Heat of formation + Delta-G solvation = 38.098662 kcal Electronic energy + Delta-G solvation = -28021.369198 eV Core-core repulsion = 24169.253509 eV Total energy + Delta-G solvation = -3852.115689 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.26908 -39.83643 -38.11903 -37.23005 -34.82220 -33.37616 -33.04855 -31.75079 -30.78750 -30.18115 -29.19255 -26.19093 -25.51583 -24.53798 -24.30752 -22.92866 -22.46296 -21.18504 -19.89601 -19.55029 -18.39900 -18.12352 -17.10172 -16.82889 -16.19801 -15.78852 -15.48271 -15.38828 -15.01686 -14.59718 -14.39954 -14.21170 -13.99784 -13.92259 -13.77136 -13.48177 -13.21616 -12.83610 -12.66451 -12.33021 -12.30727 -11.93588 -11.67000 -11.58188 -11.46831 -11.18328 -10.92039 -10.80957 -10.61231 -10.35178 -10.16713 -10.05077 -9.94948 -9.88571 -9.77019 -9.54864 -9.42439 -9.05079 -8.68011 -8.49104 -6.86910 -5.68318 -3.10391 -0.16334 0.31539 1.41652 2.24497 3.05942 3.13987 3.38099 3.42429 3.43711 3.70894 3.98673 4.11414 4.25864 4.33655 4.45377 4.51046 4.61445 4.72960 4.80202 5.06187 5.17285 5.20216 5.25461 5.27216 5.36891 5.46300 5.49189 5.54139 5.56031 5.71827 5.82297 5.86354 5.92763 6.02384 6.07394 6.16007 6.18700 6.22202 6.29474 6.38004 6.49253 6.55889 6.57497 6.75291 6.90369 7.42666 7.49922 7.54293 7.59380 7.83422 8.10247 8.33422 9.18984 9.79751 10.44415 11.35264 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.016845 B = 0.002158 C = 0.001991 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1661.829249 B =12972.922293 C =14063.089202 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.111 4.111 3 H 0.072 0.928 4 C 0.159 3.841 5 N -0.604 5.604 6 C -0.224 4.224 7 H 0.076 0.924 8 C -0.011 4.011 9 N -0.922 5.922 10 Si 0.915 3.085 11 H -0.286 1.286 12 H -0.290 1.290 13 H -0.285 1.285 14 C 0.141 3.859 15 C -0.111 4.111 16 H 0.077 0.923 17 C 0.132 3.868 18 N -0.717 5.717 19 C 0.554 3.446 20 O -0.539 6.539 21 C -0.133 4.133 22 C -0.070 4.070 23 C -0.117 4.117 24 C -0.009 4.009 25 C -0.160 4.160 26 C 0.083 3.917 27 N -0.493 5.493 28 C 0.159 3.841 29 C -0.124 4.124 30 C -0.017 4.017 31 H 0.045 0.955 32 H 0.055 0.945 33 H 0.051 0.949 34 H 0.107 0.893 35 H 0.013 0.987 36 H 0.253 0.747 37 H 0.024 0.976 38 H 0.017 0.983 39 H 0.068 0.932 40 H 0.072 0.928 41 H 0.400 0.600 42 H 0.133 0.867 43 H 0.138 0.862 44 H 0.140 0.860 45 H 0.154 0.846 46 H 0.168 0.832 47 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.767 -3.223 23.496 23.782 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.131 4.131 3 H 0.090 0.910 4 C 0.035 3.965 5 N -0.330 5.330 6 C -0.352 4.352 7 H 0.094 0.906 8 C -0.206 4.206 9 N -0.570 5.570 10 Si 0.745 3.255 11 H -0.212 1.212 12 H -0.215 1.215 13 H -0.211 1.211 14 C 0.015 3.985 15 C -0.130 4.130 16 H 0.095 0.905 17 C 0.009 3.991 18 N -0.368 5.368 19 C 0.341 3.659 20 O -0.417 6.417 21 C -0.136 4.136 22 C -0.090 4.090 23 C -0.134 4.134 24 C -0.014 4.014 25 C -0.179 4.179 26 C -0.060 4.060 27 N -0.200 5.200 28 C -0.013 4.013 29 C -0.126 4.126 30 C -0.038 4.038 31 H 0.064 0.936 32 H 0.074 0.926 33 H 0.070 0.930 34 H 0.124 0.876 35 H 0.031 0.969 36 H 0.064 0.936 37 H 0.042 0.958 38 H 0.035 0.965 39 H 0.086 0.914 40 H 0.090 0.910 41 H 0.236 0.764 42 H 0.151 0.849 43 H 0.156 0.844 44 H 0.158 0.842 45 H 0.172 0.828 46 H 0.185 0.815 47 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -1.671 -2.165 24.197 24.351 hybrid contribution 0.700 -1.329 -1.538 2.150 sum -0.971 -3.494 22.659 22.947 Atomic orbital electron populations 1.21650 0.95441 1.01421 1.00706 1.22638 0.94612 0.99550 0.96343 0.90988 1.22027 0.84018 0.95847 0.94645 1.44469 1.10707 1.78856 0.98962 1.19018 0.91117 1.37875 0.87235 0.90606 1.24792 0.97307 1.01904 0.96627 1.69782 1.22546 1.53582 1.11102 0.86152 0.81240 0.78172 0.79926 1.21238 1.21539 1.21139 1.21330 0.93424 0.97033 0.86725 1.22505 0.98653 0.98163 0.93668 0.90506 1.21511 0.99731 0.93910 0.83952 1.46015 1.67612 1.13174 1.10043 1.18169 0.77852 0.87152 0.82724 1.90783 1.51889 1.15043 1.84017 1.20019 1.04707 0.94119 0.94730 1.21103 0.95781 0.92547 0.99530 1.20881 1.00617 1.00500 0.91450 1.18311 0.95822 0.92698 0.94562 1.21950 1.01437 1.01246 0.93289 1.22273 0.96187 0.90507 0.97042 1.67492 1.12138 1.06493 1.33919 1.23343 0.91206 0.99914 0.86841 1.19016 1.03554 0.93951 0.96098 1.21461 0.91843 1.00384 0.90098 0.93634 0.92616 0.92959 0.87562 0.96930 0.93643 0.95808 0.96507 0.91356 0.91010 0.76402 0.84885 0.84395 0.84187 0.82846 0.81537 0.83298 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.00 9.31 37.16 0.35 -1.65 16 2 C -0.11 -1.99 3.10 -88.36 -0.27 -2.26 16 3 H 0.07 1.32 8.05 -51.93 -0.42 0.90 16 4 C 0.16 3.73 5.37 -2.41 -0.01 3.72 16 5 N -0.60 -15.07 3.40 -169.94 -0.58 -15.65 16 6 C -0.22 -6.15 10.27 -15.06 -0.15 -6.31 16 7 H 0.08 2.01 7.83 -52.49 -0.41 1.60 16 8 C -0.01 -0.30 5.49 -17.43 -0.10 -0.39 16 9 N -0.92 -26.47 10.09 55.49 0.56 -25.91 16 10 Si 0.91 21.83 29.55 -169.99 -5.02 16.81 16 11 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 12 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 13 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 14 C 0.14 2.77 6.64 -3.06 -0.02 2.75 16 15 C -0.11 -1.76 2.45 -88.79 -0.22 -1.98 16 16 H 0.08 1.14 8.04 -51.93 -0.42 0.72 16 17 C 0.13 1.87 5.00 -4.05 -0.02 1.85 16 18 N -0.72 -8.86 5.38 -61.28 -0.33 -9.19 16 19 C 0.55 7.35 7.76 -12.36 -0.10 7.25 16 20 O -0.54 -8.89 16.30 5.31 0.09 -8.81 16 21 C -0.13 -1.42 5.87 -104.97 -0.62 -2.04 16 22 C -0.07 -0.60 9.44 -39.53 -0.37 -0.98 16 23 C -0.12 -0.91 9.77 -39.63 -0.39 -1.30 16 24 C -0.01 -0.08 5.75 -106.74 -0.61 -0.69 16 25 C -0.16 -1.16 9.87 -39.40 -0.39 -1.54 16 26 C 0.08 0.64 11.07 -17.95 -0.20 0.45 16 27 N -0.49 -4.70 10.30 -13.11 -0.14 -4.83 16 28 C 0.16 1.36 11.05 -16.93 -0.19 1.18 16 29 C -0.12 -1.16 5.74 -106.87 -0.61 -1.77 16 30 C -0.02 -0.17 9.37 -38.75 -0.36 -0.53 16 31 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 33 H 0.05 0.77 8.08 -51.92 -0.42 0.35 16 34 H 0.11 2.84 5.87 -51.93 -0.30 2.54 16 35 H 0.01 0.32 7.99 -51.93 -0.41 -0.10 16 36 H 0.25 7.07 8.31 -40.82 -0.34 6.73 16 37 H 0.02 0.48 7.73 -51.93 -0.40 0.08 16 38 H 0.02 0.32 8.14 -51.93 -0.42 -0.10 16 39 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 40 H 0.07 1.14 8.01 -51.92 -0.42 0.72 16 41 H 0.40 4.10 6.38 -40.82 -0.26 3.84 16 42 H 0.13 0.91 6.34 -52.49 -0.33 0.58 16 43 H 0.14 0.73 8.06 -52.49 -0.42 0.31 16 44 H 0.14 0.64 8.06 -52.49 -0.42 0.21 16 45 H 0.15 0.79 8.06 -52.49 -0.42 0.36 16 46 H 0.17 0.98 8.06 -52.49 -0.42 0.56 16 47 H 0.15 1.38 7.61 -52.49 -0.40 0.98 16 LS Contribution 384.68 15.07 5.80 5.80 Total: -1.00 -33.25 384.68 -10.62 -43.87 By element: Atomic # 1 Polarization: 8.87 SS G_CDS: -6.71 Total: 2.16 kcal Atomic # 6 Polarization: 0.04 SS G_CDS: -4.29 Total: -4.25 kcal Atomic # 7 Polarization: -55.09 SS G_CDS: -0.48 Total: -55.58 kcal Atomic # 8 Polarization: -8.89 SS G_CDS: 0.09 Total: -8.81 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.81 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -33.25 -10.62 -43.87 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001093110996.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.968 kcal (2) G-P(sol) polarization free energy of solvation -33.249 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.719 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.620 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.869 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.099 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds