Wall clock time and date at job start Tue Mar 31 2020 22:45:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09000 * 110.91442 * 2 1 4 4 C 1.55124 * 111.16116 * 236.07795 * 2 1 3 5 5 N 1.47428 * 104.94166 * 205.13215 * 4 2 1 6 6 C 1.36939 * 125.64516 * 203.97117 * 5 4 2 7 7 H 1.07998 * 119.99678 * 180.02562 * 6 5 4 8 8 C 1.38812 * 120.00014 * 0.03421 * 6 5 4 9 9 N 1.31622 * 120.00020 * 0.02562 * 8 6 5 10 10 Si 1.86806 * 119.99956 * 180.02562 * 8 6 5 11 11 H 1.48499 * 109.46955 * 59.99845 * 10 8 6 12 12 H 1.48494 * 109.46949 * 179.97438 * 10 8 6 13 13 H 1.48503 * 109.46705 * 299.99914 * 10 8 6 14 14 C 1.47022 * 108.70473 * 23.99759 * 5 4 2 15 15 C 1.54324 * 107.27060 * 358.94319 * 14 5 4 16 16 H 1.09002 * 110.71835 * 96.34420 * 15 14 5 17 17 C 1.52994 * 110.72247 * 219.43832 * 15 14 5 18 18 N 1.46493 * 109.47331 * 291.16438 * 17 15 14 19 19 C 1.34782 * 120.00237 * 179.97438 * 18 17 15 20 20 O 1.21566 * 119.99726 * 359.97438 * 19 18 17 21 21 C 1.47769 * 120.00389 * 179.97438 * 19 18 17 22 22 C 1.40656 * 119.69704 * 359.97438 * 21 19 18 23 23 C 1.35846 * 120.87560 * 180.02562 * 22 21 19 24 24 C 1.40398 * 119.84963 * 0.02562 * 23 22 21 25 25 C 1.40635 * 121.98786 * 179.97438 * 24 23 22 26 26 C 1.36221 * 118.73252 * 180.30011 * 25 24 23 27 27 N 1.32601 * 121.90126 * 359.42297 * 26 25 24 28 28 C 1.31240 * 122.73976 * 0.59327 * 27 26 25 29 29 C 1.40551 * 119.88083 * 359.70652 * 28 27 26 30 30 C 1.38563 * 119.70172 * 180.02562 * 21 19 18 31 31 H 1.09003 * 109.47152 * 296.09146 * 1 2 3 32 32 H 1.08996 * 109.47424 * 56.09381 * 1 2 3 33 33 H 1.09009 * 109.47084 * 176.10009 * 1 2 3 34 34 H 1.08993 * 110.42140 * 86.19817 * 4 2 1 35 35 H 1.09006 * 110.20617 * 323.94676 * 4 2 1 36 36 H 0.97002 * 119.99927 * 180.02562 * 9 8 6 37 37 H 1.08992 * 109.88127 * 239.52727 * 14 5 4 38 38 H 1.08996 * 110.00936 * 118.43202 * 14 5 4 39 39 H 1.09001 * 109.47250 * 171.15882 * 17 15 14 40 40 H 1.09009 * 109.46970 * 51.16181 * 17 15 14 41 41 H 0.97005 * 120.00259 * 359.97438 * 18 17 15 42 42 H 1.08002 * 119.56275 * 0.02562 * 22 21 19 43 43 H 1.08000 * 120.07689 * 179.97438 * 23 22 21 44 44 H 1.08002 * 120.63083 * 0.02562 * 25 24 23 45 45 H 1.08000 * 119.04819 * 179.71693 * 26 25 24 46 46 H 1.07999 * 120.05975 * 179.68553 * 28 27 26 47 47 H 1.07998 * 120.34287 * 359.95288 * 30 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9191 1.0182 0.0000 4 6 2.0900 -0.8073 -1.2004 5 7 3.4298 -1.2474 -0.7707 6 6 4.4675 -1.5739 -1.6025 7 1 5.4142 -1.8867 -1.1875 8 6 4.3024 -1.5029 -2.9789 9 7 3.1487 -1.1211 -3.4846 10 14 5.7177 -1.9491 -4.1136 11 1 6.1199 -3.3581 -3.8727 12 1 5.2879 -1.7920 -5.5263 13 1 6.8702 -1.0522 -3.8436 14 6 3.4672 -1.2781 0.6988 15 6 2.0862 -0.8079 1.2021 16 1 1.4452 -1.6614 1.4228 17 6 2.2350 0.0874 2.4338 18 7 2.7031 -0.7145 3.5668 19 6 2.9075 -0.1329 4.7654 20 8 2.7038 1.0573 4.9060 21 6 3.3791 -0.9418 5.9085 22 6 3.6122 -2.3185 5.7388 23 6 4.0454 -3.0849 6.7734 24 6 4.2648 -2.5014 8.0314 25 6 4.7124 -3.2522 9.1331 26 6 4.8975 -2.6194 10.3251 27 7 4.6788 -1.3196 10.4698 28 6 4.2609 -0.5565 9.4873 29 6 4.0332 -1.1127 8.2168 30 6 3.5867 -0.3376 7.1381 31 1 -0.3633 0.4520 0.9230 32 1 -0.3634 0.5732 -0.8529 33 1 -0.3634 -1.0254 -0.0699 34 1 2.1641 -0.1732 -2.0838 35 1 1.4546 -1.6695 -1.4035 36 1 3.0333 -1.0717 -4.4464 37 1 4.2434 -0.6057 1.0639 38 1 3.6625 -2.2927 1.0457 39 1 1.2706 0.5330 2.6777 40 1 2.9573 0.8766 2.2242 41 1 2.8660 -1.6641 3.4546 42 1 3.4446 -2.7723 4.7732 43 1 4.2199 -4.1409 6.6288 44 1 4.9014 -4.3112 9.0370 45 1 5.2366 -3.1920 11.1757 46 1 4.0919 0.4970 9.6548 47 1 3.4063 0.7198 7.2637 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001093110996.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:45:41 Heat of formation + Delta-G solvation = 18.112277 kcal Electronic energy + Delta-G solvation = -28022.235873 eV Core-core repulsion = 24169.253509 eV Total energy + Delta-G solvation = -3852.982364 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -41.94436 -40.83890 -39.58170 -37.98667 -36.15369 -34.72353 -34.00751 -32.57620 -32.50428 -30.94325 -30.43431 -27.89758 -26.87344 -25.61577 -24.96021 -24.28312 -23.22547 -22.22000 -21.49066 -20.91015 -19.39816 -18.78846 -18.73229 -17.82524 -17.26308 -16.75780 -16.66389 -16.46920 -15.99554 -15.87769 -15.58728 -15.22502 -15.03259 -14.81763 -14.69661 -14.52277 -14.34304 -14.24743 -14.00581 -13.53284 -13.37645 -13.13272 -12.93884 -12.87068 -12.77265 -12.65120 -12.46294 -12.31440 -12.00340 -11.83533 -11.62237 -11.40920 -11.33489 -11.24426 -10.99017 -10.72851 -10.51251 -10.30019 -10.07576 -9.11745 -8.87046 -7.76554 -5.20901 -0.82052 -0.34082 0.76714 1.46258 1.49077 1.49079 1.55471 2.06252 2.31617 2.49594 3.05017 3.32295 3.44668 3.48108 3.59898 3.63635 3.67736 3.79190 3.85936 3.90731 3.97756 4.00432 4.05910 4.29476 4.38919 4.50395 4.62770 4.64339 4.67588 4.75895 4.77492 4.78627 4.85353 4.91541 4.93823 4.98700 5.10794 5.16162 5.17846 5.30737 5.33806 5.39793 5.41413 5.50958 5.60627 5.70556 5.73271 5.85712 6.32944 6.45786 6.94664 7.10928 7.12025 7.79993 8.43373 9.24594 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.016845 B = 0.002158 C = 0.001991 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1661.829249 B =12972.922293 C =14063.089202 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.101 4.101 3 H 0.065 0.935 4 C 0.162 3.838 5 N -0.629 5.629 6 C -0.239 4.239 7 H 0.079 0.921 8 C -0.068 4.068 9 N -0.948 5.948 10 Si 0.978 3.022 11 H -0.277 1.277 12 H -0.294 1.294 13 H -0.279 1.279 14 C 0.137 3.863 15 C -0.089 4.089 16 H 0.097 0.903 17 C 0.144 3.856 18 N -0.709 5.709 19 C 0.555 3.445 20 O -0.578 6.578 21 C -0.147 4.147 22 C -0.076 4.076 23 C -0.109 4.109 24 C -0.023 4.023 25 C -0.154 4.154 26 C 0.072 3.928 27 N -0.515 5.515 28 C 0.150 3.850 29 C -0.136 4.136 30 C -0.021 4.021 31 H 0.073 0.927 32 H 0.053 0.947 33 H 0.055 0.945 34 H 0.068 0.932 35 H -0.009 1.009 36 H 0.247 0.753 37 H 0.019 0.981 38 H 0.031 0.969 39 H 0.079 0.921 40 H 0.053 0.947 41 H 0.412 0.588 42 H 0.151 0.849 43 H 0.168 0.832 44 H 0.171 0.829 45 H 0.178 0.822 46 H 0.184 0.816 47 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.522 -4.979 25.433 25.961 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.122 4.122 3 H 0.083 0.917 4 C 0.037 3.963 5 N -0.355 5.355 6 C -0.368 4.368 7 H 0.097 0.903 8 C -0.260 4.260 9 N -0.597 5.597 10 Si 0.807 3.193 11 H -0.203 1.203 12 H -0.220 1.220 13 H -0.205 1.205 14 C 0.012 3.988 15 C -0.109 4.109 16 H 0.116 0.884 17 C 0.020 3.980 18 N -0.361 5.361 19 C 0.344 3.656 20 O -0.459 6.459 21 C -0.150 4.150 22 C -0.096 4.096 23 C -0.127 4.127 24 C -0.028 4.028 25 C -0.174 4.174 26 C -0.071 4.071 27 N -0.223 5.223 28 C -0.021 4.021 29 C -0.138 4.138 30 C -0.042 4.042 31 H 0.092 0.908 32 H 0.072 0.928 33 H 0.074 0.926 34 H 0.086 0.914 35 H 0.009 0.991 36 H 0.056 0.944 37 H 0.037 0.963 38 H 0.049 0.951 39 H 0.097 0.903 40 H 0.072 0.928 41 H 0.250 0.750 42 H 0.169 0.831 43 H 0.186 0.814 44 H 0.189 0.811 45 H 0.195 0.805 46 H 0.201 0.799 47 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -1.420 -3.949 26.167 26.501 hybrid contribution 0.675 -0.817 -2.042 2.300 sum -0.745 -4.765 24.125 24.603 Atomic orbital electron populations 1.21603 0.92723 1.01992 1.02182 1.22474 0.96743 0.98367 0.94577 0.91659 1.21798 0.83731 0.94917 0.95842 1.44795 1.10626 1.78886 1.01148 1.19398 0.92053 1.37302 0.88058 0.90277 1.25625 0.99719 1.02553 0.98141 1.70052 1.24233 1.54715 1.10729 0.85151 0.78460 0.78186 0.77529 1.20306 1.22003 1.20520 1.21512 0.95565 0.97726 0.84011 1.22336 0.96510 0.98619 0.93387 0.88440 1.21244 0.99853 0.93160 0.83739 1.45869 1.67249 1.13629 1.09340 1.18536 0.76993 0.86837 0.83278 1.90759 1.53710 1.16799 1.84662 1.19903 1.06260 0.94987 0.93878 1.21268 0.95959 0.91587 1.00760 1.21209 0.99135 1.01785 0.90538 1.18665 0.95844 0.92672 0.95668 1.22273 1.00156 1.02592 0.92349 1.22758 0.95843 0.90187 0.98300 1.67529 1.12750 1.07600 1.34411 1.23643 0.91042 1.00821 0.86590 1.19119 1.04036 0.94576 0.96105 1.21506 0.91871 1.00502 0.90305 0.90762 0.92775 0.92618 0.91424 0.99090 0.94373 0.96298 0.95112 0.90305 0.92827 0.74981 0.83110 0.81431 0.81144 0.80475 0.79910 0.83548 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.56 9.31 71.98 0.67 -2.89 16 2 C -0.10 -3.56 3.10 -9.33 -0.03 -3.59 16 3 H 0.06 2.38 8.05 -2.39 -0.02 2.36 16 4 C 0.16 7.77 5.37 86.93 0.47 8.24 16 5 N -0.63 -31.72 3.40 -691.57 -2.35 -34.07 16 6 C -0.24 -13.28 10.27 84.03 0.86 -12.42 16 7 H 0.08 4.21 7.83 -2.91 -0.02 4.18 16 8 C -0.07 -3.83 5.49 84.86 0.47 -3.36 16 9 N -0.95 -56.16 10.09 21.65 0.22 -55.94 16 10 Si 0.98 45.40 29.55 68.60 2.03 47.43 16 11 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 12 H -0.29 -13.72 7.11 99.48 0.71 -13.01 16 13 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 14 C 0.14 5.26 6.64 86.73 0.58 5.84 16 15 C -0.09 -2.70 2.45 -9.61 -0.02 -2.72 16 16 H 0.10 2.60 8.04 -2.39 -0.02 2.58 16 17 C 0.14 3.85 5.00 86.38 0.43 4.29 16 18 N -0.71 -16.28 5.38 -466.05 -2.51 -18.79 16 19 C 0.55 14.25 7.76 86.76 0.67 14.92 16 20 O -0.58 -19.07 16.30 -3.92 -0.06 -19.13 16 21 C -0.15 -3.00 5.87 -20.09 -0.12 -3.12 16 22 C -0.08 -1.14 9.44 22.30 0.21 -0.93 16 23 C -0.11 -1.38 9.77 22.24 0.22 -1.16 16 24 C -0.02 -0.36 5.75 -21.24 -0.12 -0.48 16 25 C -0.15 -1.79 9.87 22.39 0.22 -1.57 16 26 C 0.07 0.96 11.07 84.11 0.93 1.89 16 27 N -0.51 -9.18 10.30 -195.40 -2.01 -11.20 16 28 C 0.15 2.47 11.05 85.35 0.94 3.42 16 29 C -0.14 -2.41 5.74 -21.32 -0.12 -2.53 16 30 C -0.02 -0.41 9.37 22.81 0.21 -0.19 16 31 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 32 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 33 H 0.05 1.53 8.08 -2.38 -0.02 1.51 16 34 H 0.07 3.78 5.87 -2.39 -0.01 3.77 16 35 H -0.01 -0.45 7.99 -2.38 -0.02 -0.47 16 36 H 0.25 14.25 8.31 -92.71 -0.77 13.48 16 37 H 0.02 0.75 7.73 -2.39 -0.02 0.73 16 38 H 0.03 1.11 8.14 -2.39 -0.02 1.09 16 39 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 40 H 0.05 1.66 8.01 -2.38 -0.02 1.64 16 41 H 0.41 7.41 6.38 -92.70 -0.59 6.82 16 42 H 0.15 1.60 6.34 -2.91 -0.02 1.58 16 43 H 0.17 1.06 8.06 -2.91 -0.02 1.03 16 44 H 0.17 0.84 8.06 -2.91 -0.02 0.81 16 45 H 0.18 1.34 8.06 -2.91 -0.02 1.32 16 46 H 0.18 2.09 8.06 -2.91 -0.02 2.07 16 47 H 0.15 2.79 7.61 -2.91 -0.02 2.76 16 Total: -1.00 -74.33 384.68 2.18 -72.15 By element: Atomic # 1 Polarization: 15.52 SS G_CDS: 0.40 Total: 15.92 kcal Atomic # 6 Polarization: -2.84 SS G_CDS: 6.47 Total: 3.63 kcal Atomic # 7 Polarization: -113.35 SS G_CDS: -6.65 Total: -120.00 kcal Atomic # 8 Polarization: -19.07 SS G_CDS: -0.06 Total: -19.13 kcal Atomic # 14 Polarization: 45.40 SS G_CDS: 2.03 Total: 47.43 kcal Total: -74.33 2.18 -72.15 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001093110996.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.262 kcal (2) G-P(sol) polarization free energy of solvation -74.329 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.933 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.179 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.150 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.112 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds