Wall clock time and date at job start Tue Mar 31 2020 22:45:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 110.64379 * 2 1 4 4 C 1.54328 * 110.71672 * 236.66601 * 2 1 3 5 5 N 1.47024 * 107.26990 * 219.44647 * 4 2 1 6 6 C 1.36944 * 125.64537 * 178.92453 * 5 4 2 7 7 H 1.08007 * 119.99616 * 180.02562 * 6 5 4 8 8 C 1.38806 * 120.00299 * 0.02562 * 6 5 4 9 9 N 1.31617 * 119.99970 * 0.02562 * 8 6 5 10 10 Si 1.86797 * 120.00127 * 180.02562 * 8 6 5 11 11 H 1.48500 * 109.47107 * 0.02562 * 10 8 6 12 12 H 1.48503 * 109.47053 * 119.99880 * 10 8 6 13 13 H 1.48493 * 109.47206 * 239.99895 * 10 8 6 14 14 C 1.47426 * 108.70550 * 358.93788 * 5 4 2 15 15 C 1.54910 * 104.82638 * 24.13048 * 14 5 4 16 16 H 1.08999 * 111.03954 * 81.08145 * 15 14 5 17 17 C 1.53005 * 111.00207 * 204.91216 * 15 14 5 18 18 N 1.46497 * 109.47476 * 287.20187 * 17 15 14 19 19 C 1.34770 * 120.00372 * 180.02562 * 18 17 15 20 20 O 1.21509 * 119.99779 * 359.97438 * 19 18 17 21 21 C 1.48278 * 120.00416 * 179.97438 * 19 18 17 22 22 C 1.40275 * 119.24001 * 179.97438 * 21 19 18 23 23 C 1.36507 * 119.81263 * 180.02562 * 22 21 19 24 24 C 1.40751 * 118.24166 * 0.02562 * 23 22 21 25 25 C 1.40423 * 121.27040 * 180.27172 * 24 23 22 26 26 C 1.36132 * 119.64941 * 180.26709 * 25 24 23 27 27 C 1.39439 * 120.91134 * 359.44955 * 26 25 24 28 28 C 1.35994 * 121.08769 * 0.28806 * 27 26 25 29 29 C 1.40824 * 119.73499 * 359.97438 * 28 27 26 30 30 N 1.31878 * 119.23736 * 359.97438 * 21 19 18 31 31 H 1.08999 * 109.46761 * 296.85672 * 1 2 3 32 32 H 1.08996 * 109.47261 * 56.85347 * 1 2 3 33 33 H 1.08997 * 109.47672 * 176.86024 * 1 2 3 34 34 H 1.08999 * 109.88154 * 338.85842 * 4 2 1 35 35 H 1.09002 * 109.88352 * 99.87216 * 4 2 1 36 36 H 0.97001 * 120.00476 * 179.97438 * 9 8 6 37 37 H 1.08997 * 110.36534 * 265.29695 * 14 5 4 38 38 H 1.09001 * 110.36520 * 142.96856 * 14 5 4 39 39 H 1.09001 * 109.47256 * 167.19919 * 17 15 14 40 40 H 1.09003 * 109.46684 * 47.19896 * 17 15 14 41 41 H 0.97001 * 119.99856 * 359.97438 * 18 17 15 42 42 H 1.08005 * 120.09384 * 0.04619 * 22 21 19 43 43 H 1.08001 * 120.87667 * 180.02562 * 23 22 21 44 44 H 1.07995 * 120.17753 * 0.02562 * 25 24 23 45 45 H 1.08002 * 119.54710 * 179.73767 * 26 25 24 46 46 H 1.08004 * 119.45640 * 180.25414 * 27 26 25 47 47 H 1.08003 * 120.13446 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9143 1.0200 0.0000 4 6 2.0759 -0.7932 -1.2060 5 7 3.2444 -1.5521 -0.7365 6 6 4.0035 -2.4004 -1.4977 7 1 4.8455 -2.9138 -1.0573 8 6 3.6908 -2.6005 -2.8352 9 7 2.6650 -1.9745 -3.3720 10 14 4.7259 -3.7582 -3.8733 11 1 5.8119 -4.3334 -3.0397 12 1 3.8701 -4.8538 -4.3954 13 1 5.3180 -3.0082 -5.0099 14 6 3.4633 -1.2488 0.6895 15 6 2.0789 -0.7935 1.2150 16 1 1.4447 -1.6508 1.4406 17 6 2.2278 0.1119 2.4394 18 7 2.6329 -0.6921 3.5950 19 6 2.8251 -0.1029 4.7918 20 8 2.6628 1.0952 4.9122 21 6 3.2346 -0.9168 5.9617 22 6 3.4307 -0.2870 7.1997 23 6 3.8082 -1.0249 8.2843 24 6 3.9896 -2.4106 8.1166 25 6 4.3718 -3.2309 9.1903 26 6 4.5433 -4.5664 8.9898 27 6 4.3336 -5.1349 7.7339 28 6 3.9578 -4.3728 6.6721 29 6 3.7752 -2.9863 6.8372 30 7 3.4060 -2.2161 5.8142 31 1 -0.3633 0.4643 0.9168 32 1 -0.3633 0.5619 -0.8604 33 1 -0.3634 -1.0261 -0.0563 34 1 1.3128 -1.4785 -1.5751 35 1 2.3714 -0.1059 -1.9987 36 1 2.4467 -2.1139 -4.3068 37 1 4.1931 -0.4467 0.7990 38 1 3.7960 -2.1408 1.2203 39 1 1.2749 0.5972 2.6504 40 1 2.9855 0.8700 2.2406 41 1 2.7621 -1.6486 3.4990 42 1 3.2831 0.7787 7.2945 43 1 3.9636 -0.5578 9.2456 44 1 4.5327 -2.8040 10.1692 45 1 4.8414 -5.1951 9.8158 46 1 4.4725 -6.1978 7.6022 47 1 3.7999 -4.8292 5.7060 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001093151039.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:45:36 Heat of formation + Delta-G solvation = 39.334371 kcal Electronic energy + Delta-G solvation = -28218.614900 eV Core-core repulsion = 24366.552795 eV Total energy + Delta-G solvation = -3852.062105 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.29119 -39.59970 -38.03439 -37.11347 -34.77811 -33.87543 -32.89372 -31.14647 -30.69976 -30.43590 -29.16994 -26.18183 -25.59864 -24.72780 -23.94455 -22.70550 -22.46597 -21.00923 -19.99305 -19.37548 -18.47713 -18.00461 -17.52062 -16.73622 -15.92979 -15.63805 -15.52246 -15.05816 -14.83227 -14.65420 -14.49871 -14.20576 -13.94254 -13.70960 -13.45889 -13.38462 -13.18496 -12.86666 -12.48820 -12.06902 -12.04326 -11.87791 -11.76668 -11.65404 -11.36259 -11.18357 -10.96146 -10.79685 -10.75850 -10.50074 -10.10063 -9.95157 -9.92562 -9.84613 -9.65584 -9.51133 -9.19168 -8.92288 -8.65473 -8.57950 -6.79743 -5.68608 -3.01795 -0.13481 0.33506 1.58761 2.17794 3.04550 3.06750 3.41211 3.46723 3.49189 3.77934 3.82034 4.17509 4.38477 4.43700 4.51439 4.56896 4.76595 4.78815 4.97230 5.09278 5.13060 5.24349 5.35918 5.39549 5.55082 5.55855 5.59350 5.63410 5.68943 5.79144 5.88372 5.95609 6.02829 6.05587 6.10100 6.12939 6.22039 6.31748 6.41297 6.46253 6.51634 6.62782 6.66151 6.78997 6.98551 7.29559 7.60154 7.61799 7.67340 7.86930 8.15483 8.28918 9.25127 9.85410 10.51760 11.43131 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.012325 B = 0.002545 C = 0.002190 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2271.238142 B =11001.057936 C =12782.311185 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.110 4.110 3 H 0.068 0.932 4 C 0.184 3.816 5 N -0.606 5.606 6 C -0.226 4.226 7 H 0.078 0.922 8 C -0.010 4.010 9 N -0.922 5.922 10 Si 0.911 3.089 11 H -0.280 1.280 12 H -0.291 1.291 13 H -0.291 1.291 14 C 0.141 3.859 15 C -0.113 4.113 16 H 0.081 0.919 17 C 0.130 3.870 18 N -0.700 5.700 19 C 0.565 3.435 20 O -0.536 6.536 21 C 0.121 3.879 22 C -0.125 4.125 23 C -0.064 4.064 24 C -0.089 4.089 25 C -0.103 4.103 26 C -0.107 4.107 27 C -0.106 4.106 28 C -0.082 4.082 29 C 0.124 3.876 30 N -0.440 5.440 31 H 0.044 0.956 32 H 0.053 0.947 33 H 0.054 0.946 34 H 0.049 0.951 35 H 0.041 0.959 36 H 0.251 0.749 37 H 0.019 0.981 38 H 0.037 0.963 39 H 0.069 0.931 40 H 0.071 0.929 41 H 0.413 0.587 42 H 0.151 0.849 43 H 0.146 0.854 44 H 0.132 0.868 45 H 0.129 0.871 46 H 0.132 0.868 47 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.020 -1.504 26.385 26.428 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.130 4.130 3 H 0.086 0.914 4 C 0.059 3.941 5 N -0.332 5.332 6 C -0.354 4.354 7 H 0.095 0.905 8 C -0.206 4.206 9 N -0.570 5.570 10 Si 0.742 3.258 11 H -0.205 1.205 12 H -0.218 1.218 13 H -0.218 1.218 14 C 0.015 3.985 15 C -0.133 4.133 16 H 0.100 0.900 17 C 0.007 3.993 18 N -0.350 5.350 19 C 0.349 3.651 20 O -0.412 6.412 21 C -0.033 4.033 22 C -0.145 4.145 23 C -0.090 4.090 24 C -0.091 4.091 25 C -0.122 4.122 26 C -0.126 4.126 27 C -0.126 4.126 28 C -0.101 4.101 29 C 0.000 4.000 30 N -0.152 5.152 31 H 0.063 0.937 32 H 0.072 0.928 33 H 0.073 0.927 34 H 0.067 0.933 35 H 0.060 0.940 36 H 0.061 0.939 37 H 0.037 0.963 38 H 0.055 0.945 39 H 0.087 0.913 40 H 0.090 0.910 41 H 0.249 0.751 42 H 0.169 0.831 43 H 0.163 0.837 44 H 0.150 0.850 45 H 0.147 0.853 46 H 0.150 0.850 47 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -0.213 -1.186 25.383 25.411 hybrid contribution 0.764 -0.711 0.134 1.053 sum 0.552 -1.898 25.517 25.593 Atomic orbital electron populations 1.21696 0.95316 1.01636 1.00541 1.22442 0.95155 0.99116 0.96292 0.91382 1.21216 0.89104 0.93071 0.90705 1.44475 1.32608 1.51403 1.04764 1.19105 1.07523 1.17457 0.91330 0.90458 1.24796 0.98472 1.00389 0.96907 1.69972 1.28849 1.45605 1.12531 0.86054 0.79282 0.80147 0.80355 1.20535 1.21802 1.21797 1.21589 0.92966 0.97144 0.86789 1.22679 0.99520 0.98083 0.92981 0.90046 1.21508 1.00323 0.93844 0.83665 1.45958 1.67347 1.13140 1.08584 1.17891 0.78023 0.86651 0.82568 1.90781 1.51991 1.13967 1.84489 1.21421 0.97627 0.90052 0.94226 1.21762 0.98400 1.02494 0.91860 1.21464 0.95829 0.92246 0.99429 1.18992 1.00622 0.94613 0.94842 1.20996 0.99420 0.93816 0.97930 1.21021 0.98804 0.95189 0.97536 1.20965 0.98519 1.00574 0.92498 1.20959 0.98023 0.90859 1.00229 1.18862 0.98412 0.94250 0.88446 1.67844 1.09968 1.04983 1.32391 0.93664 0.92766 0.92704 0.93313 0.94039 0.93850 0.96330 0.94481 0.91293 0.91038 0.75107 0.83106 0.83662 0.85042 0.85337 0.84969 0.84111 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.11 9.16 37.16 0.34 -1.77 16 2 C -0.11 -2.02 3.02 -88.79 -0.27 -2.29 16 3 H 0.07 1.21 8.04 -51.93 -0.42 0.79 16 4 C 0.18 4.44 4.97 -3.06 -0.02 4.42 16 5 N -0.61 -15.54 3.39 -170.07 -0.58 -16.12 16 6 C -0.23 -6.34 10.28 -15.06 -0.15 -6.50 16 7 H 0.08 2.11 7.83 -52.48 -0.41 1.70 16 8 C -0.01 -0.27 5.49 -17.43 -0.10 -0.37 16 9 N -0.92 -27.22 10.31 55.49 0.57 -26.65 16 10 Si 0.91 22.28 29.55 -169.99 -5.02 17.25 16 11 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 12 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 13 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 14 C 0.14 2.91 6.65 -2.53 -0.02 2.90 16 15 C -0.11 -1.92 2.50 -88.47 -0.22 -2.14 16 16 H 0.08 1.38 8.05 -51.93 -0.42 0.96 16 17 C 0.13 1.95 5.13 -4.04 -0.02 1.93 16 18 N -0.70 -10.00 5.49 -61.11 -0.34 -10.34 16 19 C 0.56 8.34 7.81 -12.13 -0.09 8.24 16 20 O -0.54 -9.08 16.28 5.36 0.09 -8.99 16 21 C 0.12 1.56 6.75 -82.95 -0.56 1.00 16 22 C -0.12 -1.32 9.54 -39.44 -0.38 -1.69 16 23 C -0.06 -0.54 9.88 -39.26 -0.39 -0.93 16 24 C -0.09 -0.84 5.75 -106.71 -0.61 -1.45 16 25 C -0.10 -0.71 9.77 -39.52 -0.39 -1.10 16 26 C -0.11 -0.67 9.96 -39.89 -0.40 -1.07 16 27 C -0.11 -0.75 9.94 -39.94 -0.40 -1.14 16 28 C -0.08 -0.77 9.99 -39.41 -0.39 -1.16 16 29 C 0.12 1.40 6.61 -84.86 -0.56 0.84 16 30 N -0.44 -5.65 9.47 -7.54 -0.07 -5.72 16 31 H 0.04 0.61 8.10 -51.93 -0.42 0.19 16 32 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 33 H 0.05 0.89 8.06 -51.93 -0.42 0.47 16 34 H 0.05 1.30 7.01 -51.93 -0.36 0.93 16 35 H 0.04 1.12 7.50 -51.93 -0.39 0.73 16 36 H 0.25 7.19 8.31 -40.82 -0.34 6.86 16 37 H 0.02 0.40 7.91 -51.93 -0.41 -0.01 16 38 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 39 H 0.07 1.00 8.10 -51.93 -0.42 0.58 16 40 H 0.07 1.13 7.96 -51.93 -0.41 0.72 16 41 H 0.41 5.65 7.78 -40.82 -0.32 5.33 16 42 H 0.15 1.45 7.60 -52.48 -0.40 1.05 16 43 H 0.15 0.72 8.06 -52.49 -0.42 0.30 16 44 H 0.13 0.56 8.06 -52.49 -0.42 0.13 16 45 H 0.13 0.47 8.06 -52.49 -0.42 0.04 16 46 H 0.13 0.62 8.06 -52.48 -0.42 0.20 16 47 H 0.14 1.22 8.06 -52.48 -0.42 0.80 16 LS Contribution 387.80 15.07 5.84 5.84 Total: -1.00 -33.24 387.80 -11.02 -44.26 By element: Atomic # 1 Polarization: 9.65 SS G_CDS: -6.89 Total: 2.75 kcal Atomic # 6 Polarization: 2.34 SS G_CDS: -4.62 Total: -2.28 kcal Atomic # 7 Polarization: -58.42 SS G_CDS: -0.41 Total: -58.84 kcal Atomic # 8 Polarization: -9.08 SS G_CDS: 0.09 Total: -8.99 kcal Atomic # 14 Polarization: 22.28 SS G_CDS: -5.02 Total: 17.25 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -33.24 -11.02 -44.26 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001093151039.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.591 kcal (2) G-P(sol) polarization free energy of solvation -33.240 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.351 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.017 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.257 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.334 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds