Wall clock time and date at job start Tue Mar 31 2020 22:46:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08997 * 110.92052 * 2 1 4 4 C 1.54909 * 111.00221 * 236.09926 * 2 1 3 5 5 N 1.47426 * 104.83381 * 204.91626 * 4 2 1 6 6 C 1.36937 * 125.65098 * 204.09440 * 5 4 2 7 7 H 1.08000 * 120.00262 * 180.02562 * 6 5 4 8 8 C 1.38813 * 119.99548 * 0.03593 * 6 5 4 9 9 N 1.31615 * 120.00732 * 0.02562 * 8 6 5 10 10 Si 1.86803 * 119.99599 * 179.97438 * 8 6 5 11 11 H 1.48497 * 109.47311 * 0.02562 * 10 8 6 12 12 H 1.48506 * 109.47099 * 120.00319 * 10 8 6 13 13 H 1.48500 * 109.47306 * 240.00271 * 10 8 6 14 14 C 1.47018 * 108.70104 * 24.12870 * 5 4 2 15 15 C 1.54322 * 107.27336 * 358.94171 * 14 5 4 16 16 H 1.09002 * 110.71963 * 96.17078 * 15 14 5 17 17 C 1.53001 * 110.71941 * 219.26699 * 15 14 5 18 18 N 1.46496 * 109.47222 * 291.15682 * 17 15 14 19 19 C 1.34779 * 119.99713 * 180.02562 * 18 17 15 20 20 O 1.21600 * 120.00571 * 359.97438 * 19 18 17 21 21 C 1.47452 * 119.99742 * 179.97438 * 19 18 17 22 22 C 1.38956 * 121.17096 * 359.97438 * 21 19 18 23 23 N 1.32193 * 121.31904 * 180.02562 * 22 21 19 24 24 C 1.31206 * 123.69238 * 0.02562 * 23 22 21 25 25 C 1.40382 * 120.91723 * 0.02562 * 24 23 22 26 26 C 1.40388 * 122.14244 * 180.02562 * 25 24 23 27 27 C 1.36227 * 119.49025 * 179.97438 * 26 25 24 28 28 C 1.39297 * 121.09937 * 359.97438 * 27 26 25 29 29 C 1.36442 * 120.95009 * 359.97438 * 28 27 26 30 30 C 1.39687 * 119.43433 * 359.75529 * 29 28 27 31 31 H 1.08998 * 109.46949 * 296.09467 * 1 2 3 32 32 H 1.08994 * 109.47021 * 56.09642 * 1 2 3 33 33 H 1.09005 * 109.47193 * 176.10096 * 1 2 3 34 34 H 1.08998 * 110.36917 * 86.07337 * 4 2 1 35 35 H 1.09003 * 110.36973 * 323.75054 * 4 2 1 36 36 H 0.96996 * 120.00556 * 179.97438 * 9 8 6 37 37 H 1.08998 * 109.88222 * 239.52595 * 14 5 4 38 38 H 1.09005 * 110.01447 * 118.43174 * 14 5 4 39 39 H 1.08999 * 109.47061 * 51.15825 * 17 15 14 40 40 H 1.09006 * 109.46767 * 171.15478 * 17 15 14 41 41 H 0.97003 * 120.00294 * 359.97438 * 18 17 15 42 42 H 1.08000 * 119.33754 * 0.02573 * 22 21 19 43 43 H 1.07995 * 119.53551 * 179.97438 * 24 23 22 44 44 H 1.08004 * 120.25589 * 359.94727 * 26 25 24 45 45 H 1.07998 * 119.45485 * 179.97438 * 27 26 25 46 46 H 1.08006 * 119.52282 * 180.02562 * 28 27 26 47 47 H 1.08005 * 120.27954 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9192 1.0181 0.0000 4 6 2.0852 -0.8066 -1.2003 5 7 3.4271 -1.2431 -0.7734 6 6 4.4640 -1.5667 -1.6073 7 1 5.4125 -1.8770 -1.1944 8 6 4.2960 -1.4957 -2.9834 9 7 3.1404 -1.1170 -3.4868 10 14 5.7107 -1.9365 -4.1209 11 1 6.8931 -2.3272 -3.3120 12 1 5.3106 -3.0708 -4.9919 13 1 6.0528 -0.7624 -4.9633 14 6 3.4675 -1.2742 0.6959 15 6 2.0862 -0.8080 1.2022 16 1 1.4468 -1.6633 1.4209 17 6 2.2349 0.0839 2.4364 18 7 2.7054 -0.7207 3.5665 19 6 2.9091 -0.1425 4.7668 20 8 2.7028 1.0471 4.9116 21 6 3.3822 -0.9525 5.9045 22 6 3.6252 -2.3136 5.7665 23 7 4.0489 -3.0427 6.7846 24 6 4.2712 -2.5587 7.9838 25 6 4.0649 -1.1983 8.2622 26 6 4.2950 -0.6532 9.5353 27 6 4.0775 0.6750 9.7454 28 6 3.6309 1.5024 8.7176 29 6 3.3983 1.0061 7.4681 30 6 3.6166 -0.3506 7.2167 31 1 -0.3633 0.4520 0.9229 32 1 -0.3633 0.5732 -0.8529 33 1 -0.3634 -1.0253 -0.0699 34 1 2.1559 -0.1720 -2.0837 35 1 1.4519 -1.6704 -1.4025 36 1 3.0231 -1.0670 -4.4483 37 1 4.2426 -0.5998 1.0598 38 1 3.6662 -2.2885 1.0422 39 1 2.9555 0.8748 2.2284 40 1 1.2699 0.5271 2.6827 41 1 2.8697 -1.6697 3.4512 42 1 3.4647 -2.7854 4.8084 43 1 4.6168 -3.2163 8.7676 44 1 4.6413 -1.2822 10.3421 45 1 4.2543 1.0937 10.7251 46 1 3.4672 2.5521 8.9123 47 1 3.0525 1.6574 6.6790 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001093217580.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:46:08 Heat of formation + Delta-G solvation = 43.267971 kcal Electronic energy + Delta-G solvation = -28399.142378 eV Core-core repulsion = 24547.250847 eV Total energy + Delta-G solvation = -3851.891531 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -41.15689 -39.48043 -37.98538 -37.66000 -34.81054 -33.20129 -32.86010 -31.48067 -30.78305 -30.40920 -28.94938 -26.15017 -25.51102 -24.70436 -23.80176 -23.22121 -22.43376 -21.01804 -19.88388 -19.41539 -18.29385 -17.76521 -17.66802 -16.79352 -16.27424 -15.76230 -15.55079 -15.22292 -15.04288 -14.54932 -14.46255 -14.11343 -14.01129 -13.74533 -13.44741 -13.16219 -13.07625 -12.75960 -12.64829 -12.48258 -12.23599 -11.93298 -11.74285 -11.57562 -11.46231 -11.16902 -10.88985 -10.82506 -10.36170 -10.32293 -10.17261 -10.01209 -9.93589 -9.82366 -9.58228 -9.41586 -9.37782 -9.10107 -8.67043 -8.41507 -6.85054 -5.66956 -3.08777 -0.24659 0.56950 1.37462 2.55898 2.99315 3.02573 3.38796 3.44509 3.46850 3.79130 3.93139 4.19490 4.35165 4.37188 4.47231 4.53535 4.71127 4.84579 4.91757 5.06515 5.16508 5.20790 5.25764 5.32025 5.43800 5.47961 5.55623 5.64188 5.72662 5.76551 5.84177 6.02635 6.03936 6.06983 6.15049 6.18442 6.23137 6.25212 6.38120 6.50242 6.55739 6.57750 6.59609 6.76611 6.91889 7.39671 7.51759 7.55750 7.62090 7.84756 8.09056 8.34780 9.20660 9.81413 10.45943 11.36857 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.017227 B = 0.002315 C = 0.002173 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1624.954545 B =12090.315867 C =12882.679376 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.110 4.110 3 H 0.072 0.928 4 C 0.159 3.841 5 N -0.605 5.605 6 C -0.222 4.222 7 H 0.077 0.923 8 C -0.012 4.012 9 N -0.922 5.922 10 Si 0.914 3.086 11 H -0.280 1.280 12 H -0.290 1.290 13 H -0.290 1.290 14 C 0.140 3.860 15 C -0.111 4.111 16 H 0.077 0.923 17 C 0.133 3.867 18 N -0.715 5.715 19 C 0.565 3.435 20 O -0.537 6.537 21 C -0.172 4.172 22 C 0.123 3.877 23 N -0.496 5.496 24 C 0.175 3.825 25 C -0.122 4.122 26 C -0.090 4.090 27 C -0.119 4.119 28 C -0.098 4.098 29 C -0.110 4.110 30 C 0.012 3.988 31 H 0.044 0.956 32 H 0.055 0.945 33 H 0.052 0.948 34 H 0.107 0.893 35 H 0.013 0.987 36 H 0.252 0.748 37 H 0.024 0.976 38 H 0.018 0.982 39 H 0.072 0.928 40 H 0.069 0.931 41 H 0.401 0.599 42 H 0.160 0.840 43 H 0.166 0.834 44 H 0.135 0.865 45 H 0.127 0.873 46 H 0.129 0.871 47 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.037 1.285 25.787 25.900 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.130 4.130 3 H 0.090 0.910 4 C 0.034 3.966 5 N -0.330 5.330 6 C -0.350 4.350 7 H 0.095 0.905 8 C -0.207 4.207 9 N -0.570 5.570 10 Si 0.745 3.255 11 H -0.205 1.205 12 H -0.218 1.218 13 H -0.217 1.217 14 C 0.014 3.986 15 C -0.131 4.131 16 H 0.096 0.904 17 C 0.010 3.990 18 N -0.366 5.366 19 C 0.352 3.648 20 O -0.416 6.416 21 C -0.177 4.177 22 C -0.022 4.022 23 N -0.203 5.203 24 C 0.003 3.997 25 C -0.124 4.124 26 C -0.110 4.110 27 C -0.137 4.137 28 C -0.118 4.118 29 C -0.127 4.127 30 C 0.007 3.993 31 H 0.063 0.937 32 H 0.074 0.926 33 H 0.071 0.929 34 H 0.124 0.876 35 H 0.031 0.969 36 H 0.062 0.938 37 H 0.042 0.958 38 H 0.036 0.964 39 H 0.091 0.909 40 H 0.087 0.913 41 H 0.236 0.764 42 H 0.177 0.823 43 H 0.184 0.816 44 H 0.153 0.847 45 H 0.145 0.855 46 H 0.147 0.853 47 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -2.032 1.248 25.306 25.419 hybrid contribution 0.696 0.030 -0.486 0.849 sum -1.336 1.277 24.821 24.890 Atomic orbital electron populations 1.21655 0.95462 1.01443 1.00681 1.22598 0.94608 0.99529 0.96300 0.90989 1.21995 0.84027 0.95895 0.94681 1.44488 1.10585 1.78971 0.98974 1.19118 0.91058 1.37642 0.87208 0.90486 1.24788 0.97294 1.01984 0.96635 1.69797 1.22390 1.53857 1.10986 0.86005 0.81130 0.77614 0.80798 1.20540 1.21752 1.21721 1.21339 0.93389 0.97131 0.86716 1.22513 0.98724 0.98223 0.93596 0.90429 1.21517 0.99720 0.93860 0.83915 1.46012 1.67401 1.13255 1.09923 1.17791 0.77724 0.86966 0.82304 1.90629 1.52351 1.15235 1.83365 1.21947 1.06203 0.95298 0.94270 1.22815 0.92403 0.89395 0.97564 1.67130 1.12862 1.40080 1.00204 1.23315 0.90823 0.91707 0.93838 1.19022 1.03345 0.95233 0.94847 1.20955 0.99065 0.95756 0.95189 1.21001 0.99275 0.93881 0.99575 1.21204 0.97295 1.00375 0.92903 1.21832 0.97808 0.94575 0.98534 1.18918 0.95386 0.94091 0.90915 0.93662 0.92624 0.92936 0.87563 0.96870 0.93763 0.95808 0.96401 0.90932 0.91275 0.76377 0.82323 0.81650 0.84743 0.85496 0.85338 0.81691 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.02 9.31 37.16 0.35 -1.68 16 2 C -0.11 -1.98 3.09 -88.47 -0.27 -2.26 16 3 H 0.07 1.32 8.05 -51.93 -0.42 0.91 16 4 C 0.16 3.75 5.36 -2.53 -0.01 3.74 16 5 N -0.60 -15.23 3.39 -170.07 -0.58 -15.80 16 6 C -0.22 -6.15 10.27 -15.06 -0.15 -6.31 16 7 H 0.08 2.08 7.83 -52.49 -0.41 1.67 16 8 C -0.01 -0.33 5.49 -17.43 -0.10 -0.42 16 9 N -0.92 -26.68 10.09 55.49 0.56 -26.12 16 10 Si 0.91 22.05 29.55 -169.99 -5.02 17.03 16 11 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 12 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 13 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 14 C 0.14 2.80 6.64 -3.07 -0.02 2.78 16 15 C -0.11 -1.80 2.45 -88.79 -0.22 -2.01 16 16 H 0.08 1.18 8.04 -51.93 -0.42 0.76 16 17 C 0.13 1.90 5.01 -4.04 -0.02 1.88 16 18 N -0.72 -9.12 5.39 -61.38 -0.33 -9.45 16 19 C 0.57 7.83 7.77 -12.51 -0.10 7.73 16 20 O -0.54 -8.72 13.74 5.28 0.07 -8.64 16 21 C -0.17 -2.13 6.07 -102.66 -0.62 -2.75 16 22 C 0.12 1.36 10.71 -17.13 -0.18 1.17 16 23 N -0.50 -5.46 10.22 -12.58 -0.13 -5.59 16 24 C 0.17 1.55 11.00 -17.01 -0.19 1.37 16 25 C -0.12 -1.18 5.74 -106.89 -0.61 -1.79 16 26 C -0.09 -0.64 9.82 -39.50 -0.39 -1.03 16 27 C -0.12 -0.85 9.94 -39.91 -0.40 -1.25 16 28 C -0.10 -0.86 9.96 -39.84 -0.40 -1.25 16 29 C -0.11 -1.27 9.32 -39.69 -0.37 -1.64 16 30 C 0.01 0.15 5.90 -104.75 -0.62 -0.47 16 31 H 0.04 0.59 8.14 -51.93 -0.42 0.16 16 32 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 33 H 0.05 0.78 8.07 -51.93 -0.42 0.36 16 34 H 0.11 2.86 5.87 -51.93 -0.30 2.55 16 35 H 0.01 0.33 7.98 -51.93 -0.41 -0.08 16 36 H 0.25 7.06 8.31 -40.82 -0.34 6.72 16 37 H 0.02 0.49 7.73 -51.93 -0.40 0.09 16 38 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 39 H 0.07 1.15 8.00 -51.93 -0.42 0.73 16 40 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 41 H 0.40 4.35 6.51 -40.82 -0.27 4.08 16 42 H 0.16 1.43 6.44 -52.49 -0.34 1.09 16 43 H 0.17 0.85 8.06 -52.49 -0.42 0.43 16 44 H 0.13 0.53 8.06 -52.48 -0.42 0.11 16 45 H 0.13 0.56 8.06 -52.49 -0.42 0.14 16 46 H 0.13 0.84 8.06 -52.48 -0.42 0.41 16 47 H 0.17 2.16 5.24 -52.48 -0.28 1.88 16 LS Contribution 380.43 15.07 5.73 5.73 Total: -1.00 -33.00 380.43 -10.62 -43.61 By element: Atomic # 1 Polarization: 10.01 SS G_CDS: -6.60 Total: 3.41 kcal Atomic # 6 Polarization: 0.14 SS G_CDS: -4.32 Total: -4.19 kcal Atomic # 7 Polarization: -56.48 SS G_CDS: -0.48 Total: -56.96 kcal Atomic # 8 Polarization: -8.72 SS G_CDS: 0.07 Total: -8.64 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.02 Total: 17.03 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -33.00 -10.62 -43.61 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001093217580.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.881 kcal (2) G-P(sol) polarization free energy of solvation -32.997 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.885 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.617 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.613 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.268 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds