Wall clock time and date at job start Tue Mar 31 2020 22:46:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08997 * 110.92052 * 2 1 4 4 C 1.54909 * 111.00221 * 236.09926 * 2 1 3 5 5 N 1.47426 * 104.83381 * 204.91626 * 4 2 1 6 6 C 1.36937 * 125.65098 * 204.09440 * 5 4 2 7 7 H 1.08000 * 120.00262 * 180.02562 * 6 5 4 8 8 C 1.38813 * 119.99548 * 0.03593 * 6 5 4 9 9 N 1.31615 * 120.00732 * 0.02562 * 8 6 5 10 10 Si 1.86803 * 119.99599 * 179.97438 * 8 6 5 11 11 H 1.48497 * 109.47311 * 0.02562 * 10 8 6 12 12 H 1.48506 * 109.47099 * 120.00319 * 10 8 6 13 13 H 1.48500 * 109.47306 * 240.00271 * 10 8 6 14 14 C 1.47018 * 108.70104 * 24.12870 * 5 4 2 15 15 C 1.54322 * 107.27336 * 358.94171 * 14 5 4 16 16 H 1.09002 * 110.71963 * 96.17078 * 15 14 5 17 17 C 1.53001 * 110.71941 * 219.26699 * 15 14 5 18 18 N 1.46496 * 109.47222 * 291.15682 * 17 15 14 19 19 C 1.34779 * 119.99713 * 180.02562 * 18 17 15 20 20 O 1.21600 * 120.00571 * 359.97438 * 19 18 17 21 21 C 1.47452 * 119.99742 * 179.97438 * 19 18 17 22 22 C 1.38956 * 121.17096 * 359.97438 * 21 19 18 23 23 N 1.32193 * 121.31904 * 180.02562 * 22 21 19 24 24 C 1.31206 * 123.69238 * 0.02562 * 23 22 21 25 25 C 1.40382 * 120.91723 * 0.02562 * 24 23 22 26 26 C 1.40388 * 122.14244 * 180.02562 * 25 24 23 27 27 C 1.36227 * 119.49025 * 179.97438 * 26 25 24 28 28 C 1.39297 * 121.09937 * 359.97438 * 27 26 25 29 29 C 1.36442 * 120.95009 * 359.97438 * 28 27 26 30 30 C 1.39687 * 119.43433 * 359.75529 * 29 28 27 31 31 H 1.08998 * 109.46949 * 296.09467 * 1 2 3 32 32 H 1.08994 * 109.47021 * 56.09642 * 1 2 3 33 33 H 1.09005 * 109.47193 * 176.10096 * 1 2 3 34 34 H 1.08998 * 110.36917 * 86.07337 * 4 2 1 35 35 H 1.09003 * 110.36973 * 323.75054 * 4 2 1 36 36 H 0.96996 * 120.00556 * 179.97438 * 9 8 6 37 37 H 1.08998 * 109.88222 * 239.52595 * 14 5 4 38 38 H 1.09005 * 110.01447 * 118.43174 * 14 5 4 39 39 H 1.08999 * 109.47061 * 51.15825 * 17 15 14 40 40 H 1.09006 * 109.46767 * 171.15478 * 17 15 14 41 41 H 0.97003 * 120.00294 * 359.97438 * 18 17 15 42 42 H 1.08000 * 119.33754 * 0.02573 * 22 21 19 43 43 H 1.07995 * 119.53551 * 179.97438 * 24 23 22 44 44 H 1.08004 * 120.25589 * 359.94727 * 26 25 24 45 45 H 1.07998 * 119.45485 * 179.97438 * 27 26 25 46 46 H 1.08006 * 119.52282 * 180.02562 * 28 27 26 47 47 H 1.08005 * 120.27954 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9192 1.0181 0.0000 4 6 2.0852 -0.8066 -1.2003 5 7 3.4271 -1.2431 -0.7734 6 6 4.4640 -1.5667 -1.6073 7 1 5.4125 -1.8770 -1.1944 8 6 4.2960 -1.4957 -2.9834 9 7 3.1404 -1.1170 -3.4868 10 14 5.7107 -1.9365 -4.1209 11 1 6.8931 -2.3272 -3.3120 12 1 5.3106 -3.0708 -4.9919 13 1 6.0528 -0.7624 -4.9633 14 6 3.4675 -1.2742 0.6959 15 6 2.0862 -0.8080 1.2022 16 1 1.4468 -1.6633 1.4209 17 6 2.2349 0.0839 2.4364 18 7 2.7054 -0.7207 3.5665 19 6 2.9091 -0.1425 4.7668 20 8 2.7028 1.0471 4.9116 21 6 3.3822 -0.9525 5.9045 22 6 3.6252 -2.3136 5.7665 23 7 4.0489 -3.0427 6.7846 24 6 4.2712 -2.5587 7.9838 25 6 4.0649 -1.1983 8.2622 26 6 4.2950 -0.6532 9.5353 27 6 4.0775 0.6750 9.7454 28 6 3.6309 1.5024 8.7176 29 6 3.3983 1.0061 7.4681 30 6 3.6166 -0.3506 7.2167 31 1 -0.3633 0.4520 0.9229 32 1 -0.3633 0.5732 -0.8529 33 1 -0.3634 -1.0253 -0.0699 34 1 2.1559 -0.1720 -2.0837 35 1 1.4519 -1.6704 -1.4025 36 1 3.0231 -1.0670 -4.4483 37 1 4.2426 -0.5998 1.0598 38 1 3.6662 -2.2885 1.0422 39 1 2.9555 0.8748 2.2284 40 1 1.2699 0.5271 2.6827 41 1 2.8697 -1.6697 3.4512 42 1 3.4647 -2.7854 4.8084 43 1 4.6168 -3.2163 8.7676 44 1 4.6413 -1.2822 10.3421 45 1 4.2543 1.0937 10.7251 46 1 3.4672 2.5521 8.9123 47 1 3.0525 1.6574 6.6790 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001093217580.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:46:07 Heat of formation + Delta-G solvation = 23.099271 kcal Electronic energy + Delta-G solvation = -28400.016959 eV Core-core repulsion = 24547.250847 eV Total energy + Delta-G solvation = -3852.766112 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -41.94268 -40.55359 -39.48856 -38.35482 -36.15960 -34.76039 -33.79790 -32.57065 -32.17440 -31.40958 -30.14042 -27.89346 -26.85980 -25.80038 -24.57227 -24.44785 -23.48637 -22.08622 -21.52857 -20.82087 -19.13602 -18.86019 -18.54513 -18.41810 -17.28170 -16.87323 -16.65579 -16.52925 -16.02646 -15.84809 -15.60288 -15.33714 -15.13058 -14.72982 -14.68655 -14.35567 -14.28003 -13.99609 -13.72743 -13.51180 -13.40332 -13.17659 -13.03775 -12.91332 -12.77909 -12.69524 -12.48190 -12.43223 -11.95017 -11.84956 -11.62690 -11.42369 -11.27390 -11.12004 -11.00472 -10.75979 -10.41395 -10.22687 -10.08634 -9.14305 -8.88715 -7.78247 -5.22594 -0.98304 -0.13642 0.65736 1.45362 1.46011 1.56336 1.72080 1.99209 2.18515 2.48123 3.05349 3.21178 3.30858 3.49082 3.58581 3.64019 3.69800 3.77487 3.86371 3.88478 3.95328 4.00956 4.27048 4.32117 4.36304 4.47354 4.49722 4.59780 4.62066 4.74233 4.76073 4.78612 4.83661 4.95664 5.03453 5.06373 5.10148 5.17258 5.32517 5.37954 5.39260 5.40723 5.49535 5.51011 5.57194 5.71876 5.83981 5.90447 6.31288 6.38806 6.81406 7.07014 7.10706 7.78133 8.41571 9.23398 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.017227 B = 0.002315 C = 0.002173 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1624.954545 B =12090.315867 C =12882.679376 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.100 4.100 3 H 0.066 0.934 4 C 0.162 3.838 5 N -0.629 5.629 6 C -0.237 4.237 7 H 0.078 0.922 8 C -0.068 4.068 9 N -0.948 5.948 10 Si 0.978 3.022 11 H -0.268 1.268 12 H -0.291 1.291 13 H -0.292 1.292 14 C 0.137 3.863 15 C -0.090 4.090 16 H 0.096 0.904 17 C 0.146 3.854 18 N -0.709 5.709 19 C 0.565 3.435 20 O -0.568 6.568 21 C -0.202 4.202 22 C 0.129 3.871 23 N -0.522 5.522 24 C 0.190 3.810 25 C -0.139 4.139 26 C -0.074 4.074 27 C -0.124 4.124 28 C -0.088 4.088 29 C -0.149 4.149 30 C -0.009 4.009 31 H 0.073 0.927 32 H 0.054 0.946 33 H 0.054 0.946 34 H 0.069 0.931 35 H -0.009 1.009 36 H 0.247 0.753 37 H 0.019 0.981 38 H 0.029 0.971 39 H 0.055 0.945 40 H 0.080 0.920 41 H 0.410 0.590 42 H 0.172 0.828 43 H 0.208 0.792 44 H 0.177 0.823 45 H 0.162 0.838 46 H 0.146 0.854 47 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.473 0.332 29.448 29.486 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.120 4.120 3 H 0.085 0.915 4 C 0.037 3.963 5 N -0.354 5.354 6 C -0.367 4.367 7 H 0.096 0.904 8 C -0.260 4.260 9 N -0.597 5.597 10 Si 0.807 3.193 11 H -0.192 1.192 12 H -0.218 1.218 13 H -0.219 1.219 14 C 0.011 3.989 15 C -0.109 4.109 16 H 0.115 0.885 17 C 0.022 3.978 18 N -0.361 5.361 19 C 0.354 3.646 20 O -0.449 6.449 21 C -0.208 4.208 22 C -0.015 4.015 23 N -0.230 5.230 24 C 0.020 3.980 25 C -0.141 4.141 26 C -0.094 4.094 27 C -0.142 4.142 28 C -0.107 4.107 29 C -0.167 4.167 30 C -0.014 4.014 31 H 0.092 0.908 32 H 0.073 0.927 33 H 0.073 0.927 34 H 0.087 0.913 35 H 0.009 0.991 36 H 0.057 0.943 37 H 0.037 0.963 38 H 0.047 0.953 39 H 0.074 0.926 40 H 0.099 0.901 41 H 0.248 0.752 42 H 0.189 0.811 43 H 0.225 0.775 44 H 0.194 0.806 45 H 0.180 0.820 46 H 0.164 0.836 47 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -1.464 0.277 28.997 29.036 hybrid contribution 0.580 0.332 -1.461 1.606 sum -0.884 0.609 27.537 27.558 Atomic orbital electron populations 1.21606 0.92704 1.01985 1.02210 1.22430 0.96770 0.98371 0.94412 0.91532 1.21774 0.83670 0.94965 0.95914 1.44813 1.10553 1.79002 1.01077 1.19465 0.91924 1.37215 0.88052 0.90376 1.25620 0.99736 1.02552 0.98113 1.70056 1.24065 1.54874 1.10749 0.85004 0.78681 0.76945 0.78669 1.19249 1.21802 1.21859 1.21509 0.95606 0.97641 0.84105 1.22343 0.96485 0.98678 0.93428 0.88548 1.21248 0.99892 0.93066 0.83566 1.45877 1.67284 1.13593 1.09307 1.18084 0.77056 0.86742 0.82750 1.90619 1.53788 1.16603 1.83919 1.21824 1.08940 0.95768 0.94228 1.23018 0.91285 0.88898 0.98338 1.67236 1.14450 1.40234 1.01031 1.24036 0.88128 0.91954 0.93917 1.19319 1.03885 0.95459 0.95441 1.21464 0.96731 0.96262 0.94896 1.21406 0.98474 0.93866 1.00447 1.21525 0.95353 1.01644 0.92203 1.21691 1.00919 0.94667 0.99399 1.19182 0.96006 0.94681 0.91528 0.90773 0.92671 0.92678 0.91308 0.99063 0.94338 0.96313 0.95349 0.92648 0.90142 0.75233 0.81145 0.77522 0.80613 0.82001 0.83624 0.84313 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.67 9.31 71.98 0.67 -3.00 16 2 C -0.10 -3.59 3.09 -9.40 -0.03 -3.62 16 3 H 0.07 2.48 8.05 -2.39 -0.02 2.46 16 4 C 0.16 7.91 5.36 86.85 0.47 8.38 16 5 N -0.63 -32.50 3.39 -691.99 -2.35 -34.85 16 6 C -0.24 -13.47 10.27 84.03 0.86 -12.61 16 7 H 0.08 4.28 7.83 -2.91 -0.02 4.26 16 8 C -0.07 -3.88 5.49 84.86 0.47 -3.42 16 9 N -0.95 -56.87 10.09 21.65 0.22 -56.65 16 10 Si 0.98 46.21 29.55 68.60 2.03 48.24 16 11 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 12 H -0.29 -13.67 7.11 99.48 0.71 -12.97 16 13 H -0.29 -13.73 7.11 99.48 0.71 -13.03 16 14 C 0.14 5.47 6.64 86.73 0.58 6.05 16 15 C -0.09 -2.85 2.45 -9.61 -0.02 -2.88 16 16 H 0.10 2.74 8.04 -2.39 -0.02 2.72 16 17 C 0.15 4.11 5.01 86.38 0.43 4.54 16 18 N -0.71 -17.99 5.39 -466.35 -2.51 -20.50 16 19 C 0.57 16.12 7.77 86.67 0.67 16.79 16 20 O -0.57 -19.38 13.74 -4.03 -0.06 -19.43 16 21 C -0.20 -5.08 6.07 -18.59 -0.11 -5.19 16 22 C 0.13 2.77 10.71 84.81 0.91 3.68 16 23 N -0.52 -10.58 10.22 -193.72 -1.98 -12.56 16 24 C 0.19 2.82 11.00 85.31 0.94 3.76 16 25 C -0.14 -2.36 5.74 -21.34 -0.12 -2.48 16 26 C -0.07 -0.76 9.82 22.32 0.22 -0.54 16 27 C -0.12 -1.32 9.94 22.06 0.22 -1.10 16 28 C -0.09 -1.41 9.96 22.10 0.22 -1.19 16 29 C -0.15 -3.52 9.32 22.20 0.21 -3.31 16 30 C -0.01 -0.21 5.90 -19.95 -0.12 -0.33 16 31 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 32 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 33 H 0.05 1.56 8.07 -2.38 -0.02 1.55 16 34 H 0.07 3.90 5.87 -2.39 -0.01 3.88 16 35 H -0.01 -0.45 7.98 -2.39 -0.02 -0.47 16 36 H 0.25 14.35 8.31 -92.71 -0.77 13.58 16 37 H 0.02 0.78 7.73 -2.39 -0.02 0.76 16 38 H 0.03 1.09 8.14 -2.38 -0.02 1.07 16 39 H 0.06 1.77 8.00 -2.39 -0.02 1.76 16 40 H 0.08 2.14 8.14 -2.38 -0.02 2.12 16 41 H 0.41 8.64 6.51 -92.71 -0.60 8.04 16 42 H 0.17 2.97 6.44 -2.91 -0.02 2.95 16 43 H 0.21 1.13 8.06 -2.91 -0.02 1.11 16 44 H 0.18 0.32 8.06 -2.91 -0.02 0.29 16 45 H 0.16 0.60 8.06 -2.91 -0.02 0.58 16 46 H 0.15 1.68 8.06 -2.91 -0.02 1.65 16 47 H 0.14 3.96 5.24 -2.91 -0.02 3.94 16 Total: -1.00 -76.14 380.43 2.19 -73.94 By element: Atomic # 1 Polarization: 17.88 SS G_CDS: 0.39 Total: 18.27 kcal Atomic # 6 Polarization: -2.92 SS G_CDS: 6.45 Total: 3.53 kcal Atomic # 7 Polarization: -117.93 SS G_CDS: -6.62 Total: -124.56 kcal Atomic # 8 Polarization: -19.38 SS G_CDS: -0.06 Total: -19.43 kcal Atomic # 14 Polarization: 46.21 SS G_CDS: 2.03 Total: 48.24 kcal Total: -76.14 2.19 -73.94 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001093217580.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.043 kcal (2) G-P(sol) polarization free energy of solvation -76.137 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.906 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.193 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.944 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.099 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds