Wall clock time and date at job start Tue Mar 31 2020 22:44:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08997 * 110.65940 * 2 1 4 4 C 1.54598 * 110.82969 * 236.75729 * 2 1 3 5 5 N 1.48120 * 103.42176 * 204.45026 * 4 2 1 6 6 C 1.34779 * 127.03465 * 219.28924 * 5 4 2 7 7 O 1.21601 * 120.00325 * 184.12796 * 6 5 4 8 8 C 1.47434 * 119.99942 * 4.12955 * 6 5 4 9 9 C 1.38751 * 120.33199 * 319.75416 * 8 6 5 10 10 C 1.38864 * 120.73129 * 180.25778 * 9 8 6 11 11 C 1.36350 * 121.05370 * 359.40531 * 10 9 8 12 12 C 1.40446 * 120.08169 * 0.60584 * 11 10 9 13 13 C 1.40808 * 121.25652 * 179.70160 * 12 11 10 14 14 C 1.36626 * 118.15257 * 179.97438 * 13 12 11 15 15 C 1.39232 * 119.90962 * 0.02562 * 14 13 12 16 16 N 1.31232 * 121.69605 * 359.97438 * 15 14 13 17 17 C 1.33343 * 121.35273 * 0.04176 * 16 15 14 18 18 C 1.47488 * 105.93268 * 39.01990 * 5 4 2 19 19 C 1.53994 * 107.08457 * 334.78320 * 18 5 4 20 20 H 1.08999 * 110.32911 * 120.19743 * 19 18 5 21 21 C 1.53007 * 110.32691 * 242.30987 * 19 18 5 22 22 N 1.46500 * 109.46948 * 293.54593 * 21 19 18 23 23 C 1.36932 * 120.00082 * 179.97438 * 22 21 19 24 24 H 1.08004 * 119.99896 * 0.02562 * 23 22 21 25 25 C 1.38810 * 120.00173 * 179.97438 * 23 22 21 26 26 N 1.31611 * 119.99935 * 359.97438 * 25 23 22 27 27 Si 1.86798 * 119.99974 * 180.02562 * 25 23 22 28 28 H 1.48505 * 109.47321 * 60.00107 * 27 25 23 29 29 H 1.48503 * 109.47215 * 180.02562 * 27 25 23 30 30 H 1.48506 * 109.47250 * 300.00053 * 27 25 23 31 31 H 1.08998 * 109.47120 * 296.80978 * 1 2 3 32 32 H 1.09003 * 109.46900 * 56.80479 * 1 2 3 33 33 H 1.09000 * 109.47854 * 176.80341 * 1 2 3 34 34 H 1.08997 * 110.62250 * 85.93413 * 4 2 1 35 35 H 1.08995 * 110.54782 * 322.92332 * 4 2 1 36 36 H 1.08007 * 119.63588 * 359.97411 * 9 8 6 37 37 H 1.07997 * 119.47442 * 179.71952 * 10 9 8 38 38 H 1.07999 * 119.96209 * 180.28702 * 11 10 9 39 39 H 1.08004 * 120.91844 * 359.97438 * 13 12 11 40 40 H 1.08005 * 120.04313 * 179.97438 * 14 13 12 41 41 H 1.08003 * 119.14948 * 179.97438 * 15 14 13 42 42 H 1.09000 * 109.90891 * 94.14326 * 18 5 4 43 43 H 1.08994 * 109.91166 * 215.41941 * 18 5 4 44 44 H 1.08994 * 109.47039 * 53.54757 * 21 19 18 45 45 H 1.09001 * 109.46840 * 173.54815 * 21 19 18 46 46 H 0.97005 * 119.99700 * 0.02562 * 22 21 19 47 47 H 0.97005 * 120.00357 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9146 1.0199 0.0000 4 6 2.0797 -0.7921 -1.2085 5 7 3.4278 -1.2113 -0.7603 6 6 4.5537 -1.2498 -1.5001 7 8 5.5816 -1.6884 -1.0207 8 6 4.5392 -0.7601 -2.8907 9 6 3.4584 -1.0306 -3.7176 10 6 3.4384 -0.5780 -5.0302 11 6 4.4714 0.1529 -5.5380 12 6 5.5853 0.4492 -4.7356 13 6 6.6685 1.1967 -5.2365 14 6 7.7193 1.4485 -4.4004 15 6 7.6973 0.9685 -3.0936 16 7 6.6853 0.2724 -2.6317 17 6 5.6295 -0.0080 -3.3964 18 6 3.2874 -1.5718 0.6630 19 6 2.0775 -0.7917 1.2100 20 1 1.3210 -1.4808 1.5853 21 6 2.5196 0.1659 2.3184 22 7 2.9868 -0.6057 3.4728 23 6 3.4353 0.0417 4.5929 24 1 3.4443 1.1212 4.6255 25 6 3.8774 -0.6894 5.6869 26 7 3.8650 -2.0049 5.6478 27 14 4.4886 0.1938 7.2152 28 1 3.4003 1.0409 7.7660 29 1 4.9016 -0.8058 8.2328 30 1 5.6505 1.0485 6.8617 31 1 -0.3633 0.4635 0.9172 32 1 -0.3633 0.5627 -0.8600 33 1 -0.3635 -1.0260 -0.0573 34 1 2.1486 -0.1519 -2.0879 35 1 1.4547 -1.6614 -1.4124 36 1 2.6254 -1.6036 -3.3375 37 1 2.5888 -0.8042 -5.6574 38 1 4.4354 0.5000 -6.5600 39 1 6.6685 1.5607 -6.2533 40 1 8.5662 2.0185 -4.7530 41 1 8.5347 1.1745 -2.4434 42 1 3.1124 -2.6434 0.7589 43 1 4.1882 -1.2898 1.2079 44 1 3.3290 0.7971 1.9517 45 1 1.6776 0.7909 2.6158 46 1 2.9790 -1.5753 3.4433 47 1 4.1743 -2.5159 6.4121 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001106382784.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:44:44 Heat of formation + Delta-G solvation = 41.635905 kcal Electronic energy + Delta-G solvation = -28966.259771 eV Core-core repulsion = 25114.297468 eV Total energy + Delta-G solvation = -3851.962303 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.22834 -39.79764 -37.75970 -37.13290 -34.57476 -33.70224 -32.76482 -31.40258 -30.86412 -30.55443 -28.82116 -26.46683 -25.65584 -24.68597 -23.76999 -23.53067 -22.64954 -21.06503 -19.92193 -19.35047 -18.63393 -17.48923 -17.12238 -16.98426 -16.29770 -15.97722 -15.25468 -15.00334 -14.72482 -14.56953 -14.32055 -14.24514 -13.70799 -13.60661 -13.54991 -13.23804 -13.22372 -12.81520 -12.70324 -12.57689 -12.25306 -12.08180 -11.90040 -11.72822 -11.60453 -11.34068 -11.02404 -10.84257 -10.77485 -10.52964 -10.43666 -10.26992 -9.94416 -9.89908 -9.59641 -9.38845 -9.08699 -8.81138 -8.57781 -8.41057 -6.85823 -5.69419 -2.98124 -0.06723 0.52718 1.54372 2.52722 2.92954 3.18628 3.49585 3.53680 3.54895 3.89169 4.02960 4.20863 4.43226 4.44578 4.56905 4.59500 4.62010 4.67298 4.78322 4.89950 4.92319 4.99371 5.15596 5.34435 5.38405 5.41135 5.53433 5.55681 5.57057 5.62723 5.65003 5.71745 5.76531 5.83004 5.88934 5.98920 6.05540 6.13510 6.16421 6.22312 6.25903 6.37805 6.48216 6.52068 6.55538 6.78322 6.94214 7.69383 7.75955 7.80573 8.38653 8.49199 9.60291 10.17477 10.52280 11.53426 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.013107 B = 0.002892 C = 0.002530 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2135.829233 B = 9678.211045 C =11066.548872 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.101 4.101 3 H 0.083 0.917 4 C 0.097 3.903 5 N -0.617 5.617 6 C 0.576 3.424 7 O -0.505 6.505 8 C -0.092 4.092 9 C -0.072 4.072 10 C -0.123 4.123 11 C -0.078 4.078 12 C -0.109 4.109 13 C -0.059 4.059 14 C -0.174 4.174 15 C 0.135 3.865 16 N -0.449 5.449 17 C 0.161 3.839 18 C 0.114 3.886 19 C -0.102 4.102 20 H 0.087 0.913 21 C 0.163 3.837 22 N -0.732 5.732 23 C -0.240 4.240 24 H 0.069 0.931 25 C -0.013 4.013 26 N -0.933 5.933 27 Si 0.907 3.093 28 H -0.287 1.287 29 H -0.291 1.291 30 H -0.286 1.286 31 H 0.063 0.937 32 H 0.054 0.946 33 H 0.057 0.943 34 H 0.079 0.921 35 H 0.074 0.926 36 H 0.139 0.861 37 H 0.134 0.866 38 H 0.133 0.867 39 H 0.140 0.860 40 H 0.139 0.861 41 H 0.162 0.838 42 H 0.065 0.935 43 H 0.091 0.909 44 H 0.019 0.981 45 H 0.021 0.979 46 H 0.384 0.616 47 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.856 5.699 -28.929 29.623 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.120 4.120 3 H 0.102 0.898 4 C -0.026 4.026 5 N -0.351 5.351 6 C 0.363 3.637 7 O -0.379 6.379 8 C -0.096 4.096 9 C -0.093 4.093 10 C -0.141 4.141 11 C -0.097 4.097 12 C -0.111 4.111 13 C -0.085 4.085 14 C -0.194 4.194 15 C -0.037 4.037 16 N -0.156 5.156 17 C 0.038 3.962 18 C -0.007 4.007 19 C -0.122 4.122 20 H 0.105 0.895 21 C 0.035 3.965 22 N -0.376 5.376 23 C -0.371 4.371 24 H 0.087 0.913 25 C -0.209 4.209 26 N -0.581 5.581 27 Si 0.738 3.262 28 H -0.213 1.213 29 H -0.217 1.217 30 H -0.213 1.213 31 H 0.082 0.918 32 H 0.073 0.927 33 H 0.076 0.924 34 H 0.098 0.902 35 H 0.093 0.907 36 H 0.157 0.843 37 H 0.152 0.848 38 H 0.151 0.849 39 H 0.158 0.842 40 H 0.157 0.843 41 H 0.179 0.821 42 H 0.083 0.917 43 H 0.109 0.891 44 H 0.037 0.963 45 H 0.039 0.961 46 H 0.218 0.782 47 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -2.223 5.191 -27.702 28.272 hybrid contribution 0.371 0.486 -0.006 0.611 sum -1.851 5.677 -27.708 28.344 Atomic orbital electron populations 1.21730 0.93856 1.01976 1.02105 1.22233 0.95984 0.99784 0.94042 0.89844 1.22777 0.83362 0.98516 0.97989 1.48712 1.07820 1.66258 1.12317 1.17463 0.82313 0.79290 0.84611 1.90852 1.30512 1.44701 1.71815 1.19847 0.94155 1.00617 0.94981 1.21572 0.96534 0.97525 0.93651 1.20831 0.99329 0.98658 0.95272 1.21125 0.92379 0.96843 0.99354 1.18806 0.96660 1.00984 0.94696 1.21457 0.92154 0.94966 0.99966 1.21964 0.99945 1.02024 0.95459 1.23167 0.95985 0.91019 0.93555 1.68189 1.00050 1.11148 1.36172 1.18566 0.92549 0.95606 0.89489 1.22167 1.00340 0.98713 0.79513 1.22390 0.96608 0.97941 0.95214 0.89505 1.20691 0.96107 0.92822 0.86846 1.42352 1.77063 1.05696 1.12512 1.19161 1.34677 0.91182 0.92052 0.91327 1.24727 1.02244 0.95463 0.98469 1.69644 1.53322 1.04118 1.31058 0.86272 0.78668 0.78289 0.82981 1.21331 1.21696 1.21275 0.91752 0.92739 0.92398 0.90222 0.90741 0.84348 0.84774 0.84901 0.84230 0.84331 0.82123 0.91709 0.89076 0.96309 0.96089 0.78233 0.93479 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.37 9.16 37.16 0.34 -1.03 16 2 C -0.10 -1.24 3.20 -88.93 -0.28 -1.53 16 3 H 0.08 1.10 7.87 -51.93 -0.41 0.69 16 4 C 0.10 1.09 4.83 -2.31 -0.01 1.08 16 5 N -0.62 -9.69 3.29 -171.25 -0.56 -10.26 16 6 C 0.58 10.20 7.33 -12.51 -0.09 10.11 16 7 O -0.50 -11.21 16.55 5.28 0.09 -11.12 16 8 C -0.09 -1.31 5.50 -104.61 -0.58 -1.89 16 9 C -0.07 -0.72 7.72 -39.16 -0.30 -1.02 16 10 C -0.12 -0.91 9.93 -40.03 -0.40 -1.31 16 11 C -0.08 -0.60 9.75 -39.43 -0.38 -0.98 16 12 C -0.11 -1.15 5.74 -106.82 -0.61 -1.76 16 13 C -0.06 -0.48 9.89 -39.19 -0.39 -0.87 16 14 C -0.17 -1.44 10.03 -39.79 -0.40 -1.84 16 15 C 0.14 1.56 11.15 -17.44 -0.19 1.36 16 16 N -0.45 -7.12 9.14 -10.76 -0.10 -7.22 16 17 C 0.16 2.31 6.58 -84.58 -0.56 1.75 16 18 C 0.11 2.04 6.30 -2.98 -0.02 2.02 16 19 C -0.10 -1.65 2.64 -89.25 -0.24 -1.89 16 20 H 0.09 1.38 7.85 -51.93 -0.41 0.97 16 21 C 0.16 3.37 5.35 -4.04 -0.02 3.35 16 22 N -0.73 -19.07 5.33 -59.91 -0.32 -19.39 16 23 C -0.24 -6.94 9.99 -15.06 -0.15 -7.09 16 24 H 0.07 1.93 7.83 -52.48 -0.41 1.52 16 25 C -0.01 -0.39 5.50 -17.43 -0.10 -0.48 16 26 N -0.93 -29.03 13.06 55.49 0.72 -28.30 16 27 Si 0.91 23.15 29.55 -169.99 -5.02 18.13 16 28 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 29 H -0.29 -7.45 7.11 56.52 0.40 -7.05 16 30 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 31 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.06 0.53 8.10 -51.93 -0.42 0.11 16 34 H 0.08 0.77 5.90 -51.93 -0.31 0.46 16 35 H 0.07 0.69 7.97 -51.93 -0.41 0.28 16 36 H 0.14 1.11 6.30 -52.48 -0.33 0.78 16 37 H 0.13 0.57 8.06 -52.49 -0.42 0.14 16 38 H 0.13 0.58 8.06 -52.49 -0.42 0.16 16 39 H 0.14 0.63 8.06 -52.48 -0.42 0.21 16 40 H 0.14 0.68 8.06 -52.48 -0.42 0.26 16 41 H 0.16 1.46 8.06 -52.48 -0.42 1.04 16 42 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 43 H 0.09 2.01 7.52 -51.93 -0.39 1.62 16 44 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 45 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 46 H 0.38 10.45 7.51 -40.82 -0.31 10.14 16 47 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 LS Contribution 384.98 15.07 5.80 5.80 Total: -1.00 -37.75 384.98 -10.53 -48.28 By element: Atomic # 1 Polarization: 12.85 SS G_CDS: -6.76 Total: 6.09 kcal Atomic # 6 Polarization: 2.36 SS G_CDS: -4.38 Total: -2.02 kcal Atomic # 7 Polarization: -64.91 SS G_CDS: -0.26 Total: -65.17 kcal Atomic # 8 Polarization: -11.21 SS G_CDS: 0.09 Total: -11.12 kcal Atomic # 14 Polarization: 23.15 SS G_CDS: -5.02 Total: 18.13 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -37.75 -10.53 -48.28 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001106382784.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.919 kcal (2) G-P(sol) polarization free energy of solvation -37.753 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.167 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.531 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.284 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.636 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds