Wall clock time and date at job start Tue Mar 31 2020 22:44:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08997 * 110.65940 * 2 1 4 4 C 1.54598 * 110.82969 * 236.75729 * 2 1 3 5 5 N 1.48120 * 103.42176 * 204.45026 * 4 2 1 6 6 C 1.34779 * 127.03465 * 219.28924 * 5 4 2 7 7 O 1.21601 * 120.00325 * 184.12796 * 6 5 4 8 8 C 1.47434 * 119.99942 * 4.12955 * 6 5 4 9 9 C 1.38751 * 120.33199 * 319.75416 * 8 6 5 10 10 C 1.38864 * 120.73129 * 180.25778 * 9 8 6 11 11 C 1.36350 * 121.05370 * 359.40531 * 10 9 8 12 12 C 1.40446 * 120.08169 * 0.60584 * 11 10 9 13 13 C 1.40808 * 121.25652 * 179.70160 * 12 11 10 14 14 C 1.36626 * 118.15257 * 179.97438 * 13 12 11 15 15 C 1.39232 * 119.90962 * 0.02562 * 14 13 12 16 16 N 1.31232 * 121.69605 * 359.97438 * 15 14 13 17 17 C 1.33343 * 121.35273 * 0.04176 * 16 15 14 18 18 C 1.47488 * 105.93268 * 39.01990 * 5 4 2 19 19 C 1.53994 * 107.08457 * 334.78320 * 18 5 4 20 20 H 1.08999 * 110.32911 * 120.19743 * 19 18 5 21 21 C 1.53007 * 110.32691 * 242.30987 * 19 18 5 22 22 N 1.46500 * 109.46948 * 293.54593 * 21 19 18 23 23 C 1.36932 * 120.00082 * 179.97438 * 22 21 19 24 24 H 1.08004 * 119.99896 * 0.02562 * 23 22 21 25 25 C 1.38810 * 120.00173 * 179.97438 * 23 22 21 26 26 N 1.31611 * 119.99935 * 359.97438 * 25 23 22 27 27 Si 1.86798 * 119.99974 * 180.02562 * 25 23 22 28 28 H 1.48505 * 109.47321 * 60.00107 * 27 25 23 29 29 H 1.48503 * 109.47215 * 180.02562 * 27 25 23 30 30 H 1.48506 * 109.47250 * 300.00053 * 27 25 23 31 31 H 1.08998 * 109.47120 * 296.80978 * 1 2 3 32 32 H 1.09003 * 109.46900 * 56.80479 * 1 2 3 33 33 H 1.09000 * 109.47854 * 176.80341 * 1 2 3 34 34 H 1.08997 * 110.62250 * 85.93413 * 4 2 1 35 35 H 1.08995 * 110.54782 * 322.92332 * 4 2 1 36 36 H 1.08007 * 119.63588 * 359.97411 * 9 8 6 37 37 H 1.07997 * 119.47442 * 179.71952 * 10 9 8 38 38 H 1.07999 * 119.96209 * 180.28702 * 11 10 9 39 39 H 1.08004 * 120.91844 * 359.97438 * 13 12 11 40 40 H 1.08005 * 120.04313 * 179.97438 * 14 13 12 41 41 H 1.08003 * 119.14948 * 179.97438 * 15 14 13 42 42 H 1.09000 * 109.90891 * 94.14326 * 18 5 4 43 43 H 1.08994 * 109.91166 * 215.41941 * 18 5 4 44 44 H 1.08994 * 109.47039 * 53.54757 * 21 19 18 45 45 H 1.09001 * 109.46840 * 173.54815 * 21 19 18 46 46 H 0.97005 * 119.99700 * 0.02562 * 22 21 19 47 47 H 0.97005 * 120.00357 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9146 1.0199 0.0000 4 6 2.0797 -0.7921 -1.2085 5 7 3.4278 -1.2113 -0.7603 6 6 4.5537 -1.2498 -1.5001 7 8 5.5816 -1.6884 -1.0207 8 6 4.5392 -0.7601 -2.8907 9 6 3.4584 -1.0306 -3.7176 10 6 3.4384 -0.5780 -5.0302 11 6 4.4714 0.1529 -5.5380 12 6 5.5853 0.4492 -4.7356 13 6 6.6685 1.1967 -5.2365 14 6 7.7193 1.4485 -4.4004 15 6 7.6973 0.9685 -3.0936 16 7 6.6853 0.2724 -2.6317 17 6 5.6295 -0.0080 -3.3964 18 6 3.2874 -1.5718 0.6630 19 6 2.0775 -0.7917 1.2100 20 1 1.3210 -1.4808 1.5853 21 6 2.5196 0.1659 2.3184 22 7 2.9868 -0.6057 3.4728 23 6 3.4353 0.0417 4.5929 24 1 3.4443 1.1212 4.6255 25 6 3.8774 -0.6894 5.6869 26 7 3.8650 -2.0049 5.6478 27 14 4.4886 0.1938 7.2152 28 1 3.4003 1.0409 7.7660 29 1 4.9016 -0.8058 8.2328 30 1 5.6505 1.0485 6.8617 31 1 -0.3633 0.4635 0.9172 32 1 -0.3633 0.5627 -0.8600 33 1 -0.3635 -1.0260 -0.0573 34 1 2.1486 -0.1519 -2.0879 35 1 1.4547 -1.6614 -1.4124 36 1 2.6254 -1.6036 -3.3375 37 1 2.5888 -0.8042 -5.6574 38 1 4.4354 0.5000 -6.5600 39 1 6.6685 1.5607 -6.2533 40 1 8.5662 2.0185 -4.7530 41 1 8.5347 1.1745 -2.4434 42 1 3.1124 -2.6434 0.7589 43 1 4.1882 -1.2898 1.2079 44 1 3.3290 0.7971 1.9517 45 1 1.6776 0.7909 2.6158 46 1 2.9790 -1.5753 3.4433 47 1 4.1743 -2.5159 6.4121 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001106382784.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:44:42 Heat of formation + Delta-G solvation = 15.338684 kcal Electronic energy + Delta-G solvation = -28967.400104 eV Core-core repulsion = 25114.297468 eV Total energy + Delta-G solvation = -3853.102636 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -42.07178 -40.95290 -39.04298 -37.94765 -36.47853 -34.57928 -34.09412 -33.11061 -31.69441 -31.44111 -30.33618 -27.51976 -27.19233 -25.63267 -25.09855 -24.49531 -23.87762 -22.39109 -21.12148 -20.54724 -19.39017 -19.20771 -18.30261 -17.86488 -17.53394 -17.02738 -16.70783 -16.31954 -15.84928 -15.61522 -15.47151 -15.28160 -15.15899 -15.09734 -14.77288 -14.35561 -14.05104 -14.02951 -13.87024 -13.65412 -13.37408 -13.20920 -13.00027 -12.88364 -12.77510 -12.70293 -12.54024 -12.31831 -12.20461 -11.97982 -11.87033 -11.59793 -11.49317 -11.37600 -11.10689 -10.97916 -10.29654 -9.83114 -9.77121 -9.27672 -9.05335 -7.98819 -5.28443 -0.79179 -0.18778 0.77194 1.42104 1.46838 1.52698 1.65570 1.85247 2.09537 2.52323 3.09592 3.26204 3.33376 3.36970 3.48722 3.63388 3.73847 3.76942 3.84261 3.96756 4.03176 4.14043 4.19472 4.20128 4.40592 4.41690 4.45907 4.50776 4.53956 4.61637 4.65909 4.74428 4.85895 4.88305 4.90133 4.98837 4.99775 5.07466 5.11256 5.19130 5.22574 5.24971 5.35735 5.36916 5.43204 5.55218 5.57447 5.83854 6.22915 6.48558 7.01599 7.11622 7.28937 8.03723 8.27759 9.24579 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.013107 B = 0.002892 C = 0.002530 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2135.829233 B = 9678.211045 C =11066.548872 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.091 4.091 3 H 0.073 0.927 4 C 0.099 3.901 5 N -0.617 5.617 6 C 0.568 3.432 7 O -0.575 6.575 8 C -0.143 4.143 9 C -0.050 4.050 10 C -0.123 4.123 11 C -0.056 4.056 12 C -0.127 4.127 13 C -0.045 4.045 14 C -0.176 4.176 15 C 0.118 3.882 16 N -0.523 5.523 17 C 0.128 3.872 18 C 0.118 3.882 19 C -0.091 4.091 20 H 0.096 0.904 21 C 0.165 3.835 22 N -0.744 5.744 23 C -0.251 4.251 24 H 0.073 0.927 25 C -0.075 4.075 26 N -0.969 5.969 27 Si 0.976 3.024 28 H -0.272 1.272 29 H -0.292 1.292 30 H -0.282 1.282 31 H 0.053 0.947 32 H 0.083 0.917 33 H 0.071 0.929 34 H 0.105 0.895 35 H 0.108 0.892 36 H 0.158 0.842 37 H 0.180 0.820 38 H 0.180 0.820 39 H 0.188 0.812 40 H 0.176 0.824 41 H 0.165 0.835 42 H 0.064 0.936 43 H 0.034 0.966 44 H -0.002 1.002 45 H 0.033 0.967 46 H 0.374 0.626 47 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.429 7.501 -33.484 34.741 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.111 4.111 3 H 0.091 0.909 4 C -0.022 4.022 5 N -0.350 5.350 6 C 0.358 3.642 7 O -0.454 6.454 8 C -0.147 4.147 9 C -0.070 4.070 10 C -0.140 4.140 11 C -0.075 4.075 12 C -0.129 4.129 13 C -0.071 4.071 14 C -0.196 4.196 15 C -0.053 4.053 16 N -0.231 5.231 17 C 0.006 3.994 18 C -0.005 4.005 19 C -0.110 4.110 20 H 0.115 0.885 21 C 0.038 3.962 22 N -0.387 5.387 23 C -0.383 4.383 24 H 0.090 0.910 25 C -0.268 4.268 26 N -0.619 5.619 27 Si 0.804 3.196 28 H -0.197 1.197 29 H -0.218 1.218 30 H -0.209 1.209 31 H 0.072 0.928 32 H 0.102 0.898 33 H 0.090 0.910 34 H 0.123 0.877 35 H 0.125 0.875 36 H 0.175 0.825 37 H 0.198 0.802 38 H 0.197 0.803 39 H 0.205 0.795 40 H 0.193 0.807 41 H 0.182 0.818 42 H 0.082 0.918 43 H 0.052 0.948 44 H 0.016 0.984 45 H 0.051 0.949 46 H 0.206 0.794 47 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -4.854 7.047 -32.298 33.412 hybrid contribution 1.203 -0.020 1.282 1.758 sum -3.652 7.027 -31.016 32.011 Atomic orbital electron populations 1.21706 0.90932 1.03345 1.02979 1.22228 0.98162 0.98614 0.92129 0.90857 1.23103 0.80915 1.00053 0.98123 1.48822 1.09480 1.65624 1.11083 1.18288 0.81557 0.78025 0.86295 1.90782 1.33007 1.47844 1.73779 1.19704 0.97010 1.04545 0.93431 1.21901 0.95059 0.95760 0.94317 1.21319 1.00757 0.97743 0.94222 1.21709 0.90494 0.94585 1.00691 1.19178 0.98810 1.01519 0.93388 1.22037 0.90539 0.92866 1.01629 1.22267 1.01549 1.01921 0.93855 1.23521 0.95393 0.90772 0.95657 1.68084 1.02137 1.14011 1.38869 1.18927 0.92295 0.96759 0.91448 1.21913 0.98581 0.98904 0.81090 1.22278 0.95899 0.97475 0.95338 0.88544 1.20796 0.95372 0.93348 0.86641 1.42561 1.77187 1.05550 1.13404 1.19584 1.34097 0.91605 0.93021 0.90955 1.25616 1.03064 0.96286 1.01792 1.69812 1.54675 1.05617 1.31789 0.85184 0.78332 0.77152 0.78926 1.19721 1.21796 1.20880 0.92753 0.89769 0.91041 0.87697 0.87454 0.82497 0.80222 0.80254 0.79465 0.80700 0.81800 0.91804 0.94758 0.98388 0.94927 0.79379 0.93897 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.16 9.16 71.98 0.66 -1.50 16 2 C -0.09 -2.15 3.20 -9.70 -0.03 -2.18 16 3 H 0.07 1.89 7.87 -2.39 -0.02 1.87 16 4 C 0.10 2.05 4.83 86.61 0.42 2.47 16 5 N -0.62 -20.50 3.29 -813.96 -2.68 -23.18 16 6 C 0.57 21.94 7.33 86.67 0.64 22.58 16 7 O -0.57 -28.84 16.55 -4.03 -0.07 -28.91 16 8 C -0.14 -4.20 5.50 -19.86 -0.11 -4.30 16 9 C -0.05 -0.87 7.72 22.54 0.17 -0.70 16 10 C -0.12 -1.19 9.93 21.98 0.22 -0.98 16 11 C -0.06 -0.57 9.75 22.37 0.22 -0.35 16 12 C -0.13 -2.36 5.74 -21.29 -0.12 -2.49 16 13 C -0.05 -0.57 9.89 22.52 0.22 -0.35 16 14 C -0.18 -2.67 10.03 22.13 0.22 -2.44 16 15 C 0.12 2.94 11.15 85.02 0.95 3.88 16 16 N -0.52 -18.29 9.14 -187.97 -1.72 -20.01 16 17 C 0.13 3.82 6.58 40.61 0.27 4.09 16 18 C 0.12 4.60 6.30 86.53 0.54 5.14 16 19 C -0.09 -3.03 2.64 -9.90 -0.03 -3.06 16 20 H 0.10 3.07 7.85 -2.39 -0.02 3.05 16 21 C 0.16 7.18 5.35 86.38 0.46 7.64 16 22 N -0.74 -40.93 5.33 -343.45 -1.83 -42.76 16 23 C -0.25 -15.11 9.99 84.03 0.84 -14.27 16 24 H 0.07 4.19 7.83 -2.91 -0.02 4.17 16 25 C -0.08 -4.60 5.50 84.86 0.47 -4.13 16 26 N -0.97 -62.64 13.06 21.65 0.28 -62.36 16 27 Si 0.98 48.84 29.55 68.60 2.03 50.87 16 28 H -0.27 -12.83 7.11 99.48 0.71 -12.13 16 29 H -0.29 -14.55 7.11 99.48 0.71 -13.84 16 30 H -0.28 -13.85 7.11 99.48 0.71 -13.14 16 31 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 32 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 33 H 0.07 1.01 8.10 -2.39 -0.02 0.99 16 34 H 0.10 1.70 5.90 -2.39 -0.01 1.68 16 35 H 0.11 1.59 7.97 -2.39 -0.02 1.57 16 36 H 0.16 1.96 6.30 -2.91 -0.02 1.94 16 37 H 0.18 0.18 8.06 -2.91 -0.02 0.16 16 38 H 0.18 0.17 8.06 -2.91 -0.02 0.15 16 39 H 0.19 0.52 8.06 -2.91 -0.02 0.49 16 40 H 0.18 1.21 8.06 -2.91 -0.02 1.19 16 41 H 0.16 3.48 8.06 -2.91 -0.02 3.46 16 42 H 0.06 2.42 8.14 -2.39 -0.02 2.40 16 43 H 0.03 1.70 7.52 -2.39 -0.02 1.68 16 44 H 0.00 -0.09 8.14 -2.39 -0.02 -0.11 16 45 H 0.03 1.36 8.14 -2.39 -0.02 1.34 16 46 H 0.37 21.70 7.51 -92.70 -0.70 21.00 16 47 H 0.25 15.76 8.31 -92.70 -0.77 14.99 16 Total: -1.00 -94.75 384.98 2.31 -92.44 By element: Atomic # 1 Polarization: 24.56 SS G_CDS: 0.29 Total: 24.85 kcal Atomic # 6 Polarization: 3.04 SS G_CDS: 6.01 Total: 9.05 kcal Atomic # 7 Polarization: -142.36 SS G_CDS: -5.95 Total: -148.31 kcal Atomic # 8 Polarization: -28.84 SS G_CDS: -0.07 Total: -28.91 kcal Atomic # 14 Polarization: 48.84 SS G_CDS: 2.03 Total: 50.87 kcal Total: -94.75 2.31 -92.44 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001106382784.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.776 kcal (2) G-P(sol) polarization free energy of solvation -94.750 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.027 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.312 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.438 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.339 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds