Wall clock time and date at job start Tue Mar 31 2020 22:44:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09000 * 110.28906 * 2 1 4 4 C 1.54006 * 110.32654 * 237.86703 * 2 1 3 5 5 N 1.47484 * 107.07976 * 242.31148 * 4 2 1 6 6 C 1.34777 * 127.03127 * 154.51944 * 5 4 2 7 7 O 1.21541 * 120.00193 * 185.23342 * 6 5 4 8 8 C 1.47908 * 120.00022 * 5.23788 * 6 5 4 9 9 C 1.38884 * 121.11194 * 37.55353 * 8 6 5 10 10 C 1.39268 * 119.58126 * 180.02562 * 9 8 6 11 11 N 1.30996 * 121.88253 * 359.97438 * 10 9 8 12 12 C 1.33530 * 121.82617 * 0.02562 * 11 10 9 13 13 C 1.40722 * 120.96799 * 179.97438 * 12 11 10 14 14 C 1.36062 * 119.73952 * 179.97438 * 13 12 11 15 15 C 1.39359 * 121.05357 * 359.97438 * 14 13 12 16 16 C 1.36243 * 120.84087 * 0.02562 * 15 14 13 17 17 C 1.40103 * 119.64080 * 0.29928 * 16 15 14 18 18 C 1.48115 * 105.93597 * 334.77710 * 5 4 2 19 19 C 1.54596 * 103.42165 * 39.02766 * 18 5 4 20 20 H 1.08997 * 110.57529 * 81.17073 * 19 18 5 21 21 C 1.53004 * 110.98933 * 204.37487 * 19 18 5 22 22 N 1.46497 * 109.46774 * 288.65253 * 21 19 18 23 23 C 1.36933 * 120.00117 * 180.02562 * 22 21 19 24 24 H 1.08006 * 119.99712 * 359.97438 * 23 22 21 25 25 C 1.38813 * 120.00421 * 179.97438 * 23 22 21 26 26 N 1.31612 * 120.00008 * 359.97438 * 25 23 22 27 27 Si 1.86805 * 119.99932 * 179.97438 * 25 23 22 28 28 H 1.48496 * 109.47107 * 59.99765 * 27 25 23 29 29 H 1.48504 * 109.46775 * 180.02562 * 27 25 23 30 30 H 1.48497 * 109.46955 * 299.99792 * 27 25 23 31 31 H 1.09004 * 109.47030 * 180.67769 * 1 2 3 32 32 H 1.08994 * 109.47128 * 300.67911 * 1 2 3 33 33 H 1.08995 * 109.46884 * 60.68057 * 1 2 3 34 34 H 1.08997 * 109.90982 * 122.95237 * 4 2 1 35 35 H 1.08996 * 109.91362 * 1.66879 * 4 2 1 36 36 H 1.08009 * 120.21373 * 0.02562 * 9 8 6 37 37 H 1.08000 * 119.06522 * 179.97438 * 10 9 8 38 38 H 1.07997 * 120.13441 * 0.02562 * 13 12 11 39 39 H 1.07994 * 119.47199 * 180.02562 * 14 13 12 40 40 H 1.08001 * 119.57889 * 180.02562 * 15 14 13 41 41 H 1.07998 * 120.18232 * 180.02562 * 16 15 14 42 42 H 1.08997 * 110.66283 * 157.51211 * 18 5 4 43 43 H 1.09002 * 110.66013 * 280.62738 * 18 5 4 44 44 H 1.08997 * 109.46999 * 48.65093 * 21 19 18 45 45 H 1.08997 * 109.46898 * 168.64908 * 21 19 18 46 46 H 0.97000 * 120.00178 * 359.97438 * 22 21 19 47 47 H 0.97003 * 120.00535 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9080 1.0224 0.0000 4 6 2.0650 -0.7681 -1.2229 5 7 2.8298 -1.9203 -0.7102 6 6 3.0645 -3.0859 -1.3448 7 8 3.6331 -3.9900 -0.7646 8 6 2.6303 -3.2649 -2.7474 9 6 2.7089 -2.2223 -3.6615 10 6 2.2907 -2.4259 -4.9742 11 7 1.8214 -3.5797 -5.3798 12 6 1.7171 -4.6260 -4.5567 13 6 1.2097 -5.8573 -5.0115 14 6 1.1148 -6.9073 -4.1514 15 6 1.5133 -6.7855 -2.8216 16 6 2.0092 -5.6090 -2.3460 17 6 2.1146 -4.5049 -3.2021 18 6 3.2817 -1.5368 0.6472 19 6 2.0693 -0.7721 1.2263 20 1 1.3210 -1.4693 1.6031 21 6 2.5072 0.1966 2.3267 22 7 2.9002 -0.5618 3.5169 23 6 3.3308 0.0970 4.6374 24 1 3.3812 1.1759 4.6435 25 6 3.7027 -0.6215 5.7653 26 7 3.6409 -1.9362 5.7580 27 14 4.2909 0.2774 7.2935 28 1 3.2171 1.1799 7.7810 29 1 4.6259 -0.7104 8.3506 30 1 5.4978 1.0771 6.9636 31 1 -0.3633 -1.0276 0.0122 32 1 -0.3633 0.5243 0.8838 33 1 -0.3633 0.5032 -0.8960 34 1 2.7167 -0.1220 -1.8111 35 1 1.2334 -1.1173 -1.8349 36 1 3.0920 -1.2596 -3.3564 37 1 2.3551 -1.6093 -5.6781 38 1 0.8977 -5.9687 -6.0394 39 1 0.7252 -7.8503 -4.5052 40 1 1.4279 -7.6345 -2.1596 41 1 2.3152 -5.5266 -1.3136 42 1 3.4981 -2.4222 1.2449 43 1 4.1541 -0.8857 0.5925 44 1 3.3539 0.7864 1.9758 45 1 1.6800 0.8611 2.5760 46 1 2.8546 -1.5307 3.5115 47 1 3.9011 -2.4384 6.5460 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001106390850.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:44:57 Heat of formation + Delta-G solvation = 37.742015 kcal Electronic energy + Delta-G solvation = -28824.089043 eV Core-core repulsion = 24971.957888 eV Total energy + Delta-G solvation = -3852.131155 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.37702 -39.91785 -37.98930 -37.35425 -34.75446 -33.76342 -32.86115 -31.45919 -30.86427 -30.39872 -29.07873 -26.77983 -25.94673 -24.69141 -23.86805 -23.35829 -22.55172 -21.26890 -20.01508 -19.78025 -18.53105 -17.71559 -17.42704 -16.96997 -16.19030 -15.89390 -15.57332 -14.96631 -14.76125 -14.54009 -14.40514 -14.28206 -14.14024 -13.97706 -13.66316 -13.32276 -13.25743 -13.02801 -12.91763 -12.43649 -12.21172 -12.06469 -11.97534 -11.79154 -11.63906 -11.34830 -11.15239 -10.86613 -10.81731 -10.61307 -10.53490 -10.46791 -10.35310 -10.05609 -9.68965 -9.60890 -9.09543 -8.89886 -8.75198 -8.52553 -6.94912 -5.76985 -3.06748 -0.11941 0.49482 1.48675 2.51599 2.66897 2.86184 3.43501 3.47786 3.49204 3.82444 3.93052 4.07513 4.35256 4.41735 4.48135 4.54779 4.56124 4.73499 4.78495 4.83626 4.91574 5.03844 5.18222 5.20496 5.30062 5.33821 5.44771 5.46768 5.51603 5.56127 5.69083 5.73085 5.73994 5.79112 5.90585 5.98497 6.03838 6.04871 6.11252 6.13965 6.21461 6.23955 6.34921 6.40489 6.55325 6.66950 6.78908 7.39949 7.54304 7.67880 7.95053 8.41025 9.52249 10.08921 10.43115 11.45501 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.017564 B = 0.002512 C = 0.002316 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1593.785768 B =11142.596291 C =12085.382712 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.100 4.100 3 H 0.090 0.910 4 C 0.100 3.900 5 N -0.611 5.611 6 C 0.574 3.426 7 O -0.522 6.522 8 C -0.056 4.056 9 C -0.145 4.145 10 C 0.128 3.872 11 N -0.463 5.463 12 C 0.126 3.874 13 C -0.098 4.098 14 C -0.096 4.096 15 C -0.115 4.115 16 C -0.089 4.089 17 C -0.068 4.068 18 C 0.114 3.886 19 C -0.102 4.102 20 H 0.084 0.916 21 C 0.166 3.834 22 N -0.733 5.733 23 C -0.243 4.243 24 H 0.070 0.930 25 C -0.012 4.012 26 N -0.931 5.931 27 Si 0.907 3.093 28 H -0.286 1.286 29 H -0.291 1.291 30 H -0.286 1.286 31 H 0.054 0.946 32 H 0.064 0.936 33 H 0.054 0.946 34 H 0.070 0.930 35 H 0.075 0.925 36 H 0.146 0.854 37 H 0.166 0.834 38 H 0.137 0.863 39 H 0.131 0.869 40 H 0.131 0.869 41 H 0.148 0.852 42 H 0.092 0.908 43 H 0.079 0.921 44 H 0.022 0.978 45 H 0.024 0.976 46 H 0.384 0.616 47 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.933 -2.296 -24.564 25.627 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.120 4.120 3 H 0.108 0.892 4 C -0.023 4.023 5 N -0.343 5.343 6 C 0.362 3.638 7 O -0.399 6.399 8 C -0.068 4.068 9 C -0.166 4.166 10 C -0.044 4.044 11 N -0.171 5.171 12 C 0.004 3.996 13 C -0.117 4.117 14 C -0.116 4.116 15 C -0.133 4.133 16 C -0.108 4.108 17 C -0.070 4.070 18 C -0.007 4.007 19 C -0.122 4.122 20 H 0.103 0.897 21 C 0.038 3.962 22 N -0.377 5.377 23 C -0.374 4.374 24 H 0.088 0.912 25 C -0.208 4.208 26 N -0.580 5.580 27 Si 0.738 3.262 28 H -0.213 1.213 29 H -0.217 1.217 30 H -0.213 1.213 31 H 0.073 0.927 32 H 0.083 0.917 33 H 0.073 0.927 34 H 0.088 0.912 35 H 0.093 0.907 36 H 0.163 0.837 37 H 0.183 0.817 38 H 0.155 0.845 39 H 0.149 0.851 40 H 0.149 0.851 41 H 0.165 0.835 42 H 0.110 0.890 43 H 0.097 0.903 44 H 0.039 0.961 45 H 0.042 0.958 46 H 0.218 0.782 47 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -6.844 -2.960 -25.024 26.111 hybrid contribution 0.647 0.397 1.730 1.889 sum -6.197 -2.563 -23.294 24.240 Atomic orbital electron populations 1.21835 0.94056 1.02005 1.02018 1.22108 0.96465 0.99794 0.93609 0.89183 1.22417 0.95376 0.87325 0.97141 1.48754 1.52796 1.14282 1.18515 1.17665 0.79784 0.81285 0.85112 1.90809 1.42448 1.39688 1.66907 1.20376 0.98249 0.93832 0.94320 1.22540 0.99992 0.99448 0.94582 1.22903 0.93001 0.94770 0.93757 1.67800 1.12885 0.99545 1.36864 1.18844 0.98209 0.93735 0.88775 1.20791 0.99693 0.90649 1.00566 1.20988 0.98302 0.98854 0.93480 1.21065 0.98323 0.98115 0.95835 1.21438 0.96524 0.91752 1.01058 1.18636 0.99881 0.93820 0.94711 1.22599 0.97051 1.00372 0.80665 1.22525 0.96997 0.97912 0.94731 0.89738 1.20618 0.96618 0.92682 0.86325 1.42364 1.79307 1.05932 1.10130 1.19150 1.36269 0.91206 0.90781 0.91228 1.24752 1.02292 0.95485 0.98313 1.69646 1.54160 1.04548 1.29610 0.86271 0.78596 0.78363 0.82955 1.21272 1.21685 1.21258 0.92688 0.91700 0.92689 0.91185 0.90687 0.83663 0.81715 0.84534 0.85086 0.85137 0.83492 0.88977 0.90273 0.96055 0.95832 0.78204 0.93391 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.41 8.90 37.16 0.33 -1.08 16 2 C -0.10 -1.09 3.17 -89.24 -0.28 -1.38 16 3 H 0.09 0.90 7.85 -51.93 -0.41 0.49 16 4 C 0.10 1.00 4.99 -2.98 -0.01 0.98 16 5 N -0.61 -8.21 3.29 -171.07 -0.56 -8.78 16 6 C 0.57 8.56 7.25 -12.30 -0.09 8.47 16 7 O -0.52 -9.60 14.89 5.33 0.08 -9.52 16 8 C -0.06 -0.71 5.46 -104.34 -0.57 -1.28 16 9 C -0.15 -1.37 8.34 -38.96 -0.33 -1.70 16 10 C 0.13 1.13 11.14 -17.53 -0.20 0.93 16 11 N -0.46 -5.19 10.30 -11.01 -0.11 -5.30 16 12 C 0.13 1.50 6.61 -84.87 -0.56 0.94 16 13 C -0.10 -0.96 9.99 -39.43 -0.39 -1.36 16 14 C -0.10 -0.83 9.94 -39.95 -0.40 -1.23 16 15 C -0.12 -1.15 9.96 -39.88 -0.40 -1.55 16 16 C -0.09 -1.13 9.17 -39.60 -0.36 -1.50 16 17 C -0.07 -0.88 5.76 -106.52 -0.61 -1.49 16 18 C 0.11 1.78 6.46 -2.31 -0.01 1.77 16 19 C -0.10 -1.53 2.60 -88.93 -0.23 -1.76 16 20 H 0.08 1.39 7.86 -51.93 -0.41 0.98 16 21 C 0.17 3.09 5.59 -4.04 -0.02 3.07 16 22 N -0.73 -18.06 5.52 -59.91 -0.33 -18.39 16 23 C -0.24 -6.70 9.99 -15.06 -0.15 -6.85 16 24 H 0.07 1.85 7.83 -52.48 -0.41 1.44 16 25 C -0.01 -0.35 5.50 -17.43 -0.10 -0.44 16 26 N -0.93 -28.22 13.06 55.49 0.72 -27.50 16 27 Si 0.91 22.32 29.55 -169.99 -5.02 17.30 16 28 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 29 H -0.29 -7.24 7.11 56.52 0.40 -6.83 16 30 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 31 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 34 H 0.07 0.54 7.15 -51.93 -0.37 0.17 16 35 H 0.07 0.68 6.84 -51.93 -0.36 0.32 16 36 H 0.15 1.04 6.09 -52.48 -0.32 0.72 16 37 H 0.17 0.84 8.06 -52.49 -0.42 0.42 16 38 H 0.14 1.07 8.06 -52.49 -0.42 0.65 16 39 H 0.13 0.73 8.06 -52.49 -0.42 0.31 16 40 H 0.13 1.02 8.06 -52.49 -0.42 0.60 16 41 H 0.15 2.10 5.88 -52.49 -0.31 1.79 16 42 H 0.09 1.71 7.81 -51.93 -0.41 1.30 16 43 H 0.08 1.22 7.95 -51.93 -0.41 0.81 16 44 H 0.02 0.40 8.00 -51.93 -0.42 -0.02 16 45 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 46 H 0.38 10.09 7.67 -40.82 -0.31 9.78 16 47 H 0.26 7.54 8.31 -40.82 -0.34 7.21 16 LS Contribution 382.80 15.07 5.77 5.77 Total: -1.00 -33.78 382.80 -10.49 -44.28 By element: Atomic # 1 Polarization: 14.23 SS G_CDS: -6.65 Total: 7.59 kcal Atomic # 6 Polarization: -1.05 SS G_CDS: -4.39 Total: -5.44 kcal Atomic # 7 Polarization: -59.68 SS G_CDS: -0.28 Total: -59.96 kcal Atomic # 8 Polarization: -9.60 SS G_CDS: 0.08 Total: -9.52 kcal Atomic # 14 Polarization: 22.32 SS G_CDS: -5.02 Total: 17.30 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -33.78 -10.49 -44.28 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001106390850.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.018 kcal (2) G-P(sol) polarization free energy of solvation -33.785 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.234 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.492 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.276 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.742 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds