Wall clock time and date at job start Tue Mar 31 2020 22:44:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09000 * 110.28906 * 2 1 4 4 C 1.54006 * 110.32654 * 237.86703 * 2 1 3 5 5 N 1.47484 * 107.07976 * 242.31148 * 4 2 1 6 6 C 1.34777 * 127.03127 * 154.51944 * 5 4 2 7 7 O 1.21541 * 120.00193 * 185.23342 * 6 5 4 8 8 C 1.47908 * 120.00022 * 5.23788 * 6 5 4 9 9 C 1.38884 * 121.11194 * 37.55353 * 8 6 5 10 10 C 1.39268 * 119.58126 * 180.02562 * 9 8 6 11 11 N 1.30996 * 121.88253 * 359.97438 * 10 9 8 12 12 C 1.33530 * 121.82617 * 0.02562 * 11 10 9 13 13 C 1.40722 * 120.96799 * 179.97438 * 12 11 10 14 14 C 1.36062 * 119.73952 * 179.97438 * 13 12 11 15 15 C 1.39359 * 121.05357 * 359.97438 * 14 13 12 16 16 C 1.36243 * 120.84087 * 0.02562 * 15 14 13 17 17 C 1.40103 * 119.64080 * 0.29928 * 16 15 14 18 18 C 1.48115 * 105.93597 * 334.77710 * 5 4 2 19 19 C 1.54596 * 103.42165 * 39.02766 * 18 5 4 20 20 H 1.08997 * 110.57529 * 81.17073 * 19 18 5 21 21 C 1.53004 * 110.98933 * 204.37487 * 19 18 5 22 22 N 1.46497 * 109.46774 * 288.65253 * 21 19 18 23 23 C 1.36933 * 120.00117 * 180.02562 * 22 21 19 24 24 H 1.08006 * 119.99712 * 359.97438 * 23 22 21 25 25 C 1.38813 * 120.00421 * 179.97438 * 23 22 21 26 26 N 1.31612 * 120.00008 * 359.97438 * 25 23 22 27 27 Si 1.86805 * 119.99932 * 179.97438 * 25 23 22 28 28 H 1.48496 * 109.47107 * 59.99765 * 27 25 23 29 29 H 1.48504 * 109.46775 * 180.02562 * 27 25 23 30 30 H 1.48497 * 109.46955 * 299.99792 * 27 25 23 31 31 H 1.09004 * 109.47030 * 180.67769 * 1 2 3 32 32 H 1.08994 * 109.47128 * 300.67911 * 1 2 3 33 33 H 1.08995 * 109.46884 * 60.68057 * 1 2 3 34 34 H 1.08997 * 109.90982 * 122.95237 * 4 2 1 35 35 H 1.08996 * 109.91362 * 1.66879 * 4 2 1 36 36 H 1.08009 * 120.21373 * 0.02562 * 9 8 6 37 37 H 1.08000 * 119.06522 * 179.97438 * 10 9 8 38 38 H 1.07997 * 120.13441 * 0.02562 * 13 12 11 39 39 H 1.07994 * 119.47199 * 180.02562 * 14 13 12 40 40 H 1.08001 * 119.57889 * 180.02562 * 15 14 13 41 41 H 1.07998 * 120.18232 * 180.02562 * 16 15 14 42 42 H 1.08997 * 110.66283 * 157.51211 * 18 5 4 43 43 H 1.09002 * 110.66013 * 280.62738 * 18 5 4 44 44 H 1.08997 * 109.46999 * 48.65093 * 21 19 18 45 45 H 1.08997 * 109.46898 * 168.64908 * 21 19 18 46 46 H 0.97000 * 120.00178 * 359.97438 * 22 21 19 47 47 H 0.97003 * 120.00535 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9080 1.0224 0.0000 4 6 2.0650 -0.7681 -1.2229 5 7 2.8298 -1.9203 -0.7102 6 6 3.0645 -3.0859 -1.3448 7 8 3.6331 -3.9900 -0.7646 8 6 2.6303 -3.2649 -2.7474 9 6 2.7089 -2.2223 -3.6615 10 6 2.2907 -2.4259 -4.9742 11 7 1.8214 -3.5797 -5.3798 12 6 1.7171 -4.6260 -4.5567 13 6 1.2097 -5.8573 -5.0115 14 6 1.1148 -6.9073 -4.1514 15 6 1.5133 -6.7855 -2.8216 16 6 2.0092 -5.6090 -2.3460 17 6 2.1146 -4.5049 -3.2021 18 6 3.2817 -1.5368 0.6472 19 6 2.0693 -0.7721 1.2263 20 1 1.3210 -1.4693 1.6031 21 6 2.5072 0.1966 2.3267 22 7 2.9002 -0.5618 3.5169 23 6 3.3308 0.0970 4.6374 24 1 3.3812 1.1759 4.6435 25 6 3.7027 -0.6215 5.7653 26 7 3.6409 -1.9362 5.7580 27 14 4.2909 0.2774 7.2935 28 1 3.2171 1.1799 7.7810 29 1 4.6259 -0.7104 8.3506 30 1 5.4978 1.0771 6.9636 31 1 -0.3633 -1.0276 0.0122 32 1 -0.3633 0.5243 0.8838 33 1 -0.3633 0.5032 -0.8960 34 1 2.7167 -0.1220 -1.8111 35 1 1.2334 -1.1173 -1.8349 36 1 3.0920 -1.2596 -3.3564 37 1 2.3551 -1.6093 -5.6781 38 1 0.8977 -5.9687 -6.0394 39 1 0.7252 -7.8503 -4.5052 40 1 1.4279 -7.6345 -2.1596 41 1 2.3152 -5.5266 -1.3136 42 1 3.4981 -2.4222 1.2449 43 1 4.1541 -0.8857 0.5925 44 1 3.3539 0.7864 1.9758 45 1 1.6800 0.8611 2.5760 46 1 2.8546 -1.5307 3.5115 47 1 3.9011 -2.4384 6.5460 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001106390850.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:44:56 Heat of formation + Delta-G solvation = 16.277242 kcal Electronic energy + Delta-G solvation = -28825.019825 eV Core-core repulsion = 24971.957888 eV Total energy + Delta-G solvation = -3853.061937 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -42.25086 -40.95047 -39.16940 -38.11490 -36.49041 -34.77949 -34.04023 -33.08145 -31.64269 -31.32512 -30.48827 -27.80067 -27.24322 -25.86711 -24.86038 -24.62738 -23.61498 -22.52535 -21.20142 -20.76304 -19.41220 -19.03868 -18.54513 -18.24336 -17.27793 -17.01778 -16.53739 -16.48500 -15.79216 -15.61204 -15.49577 -15.32349 -15.16376 -14.95068 -14.90324 -14.82594 -14.42606 -14.10137 -13.98458 -13.66953 -13.36714 -13.20577 -12.93178 -12.82985 -12.73626 -12.59609 -12.48889 -12.38137 -12.19075 -11.96984 -11.79468 -11.69171 -11.62639 -11.44184 -11.38807 -10.93103 -10.51869 -9.88363 -9.82794 -9.34660 -9.00753 -7.94936 -5.24506 -0.94108 -0.26291 0.62003 1.46461 1.49840 1.51069 1.56027 1.70799 1.95688 2.55681 3.01802 3.10860 3.28018 3.38705 3.49469 3.54568 3.62516 3.66870 3.78193 3.81840 4.09012 4.13847 4.17931 4.20436 4.33967 4.36386 4.46897 4.49053 4.51289 4.55614 4.61919 4.74299 4.78696 4.81006 4.85086 4.97030 5.00273 5.04521 5.04971 5.18003 5.24105 5.30244 5.31730 5.43557 5.44979 5.48411 5.51991 5.81258 6.26224 6.32750 6.77998 6.83545 7.32277 8.08749 8.30031 9.28583 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.017564 B = 0.002512 C = 0.002316 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1593.785768 B =11142.596291 C =12085.382712 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.090 4.090 3 H 0.112 0.888 4 C 0.098 3.902 5 N -0.608 5.608 6 C 0.569 3.431 7 O -0.574 6.574 8 C -0.084 4.084 9 C -0.123 4.123 10 C 0.133 3.867 11 N -0.473 5.473 12 C 0.107 3.893 13 C -0.100 4.100 14 C -0.093 4.093 15 C -0.109 4.109 16 C -0.125 4.125 17 C -0.087 4.087 18 C 0.118 3.882 19 C -0.093 4.093 20 H 0.061 0.939 21 C 0.166 3.834 22 N -0.749 5.749 23 C -0.243 4.243 24 H 0.081 0.919 25 C -0.080 4.080 26 N -0.973 5.973 27 Si 0.975 3.025 28 H -0.275 1.275 29 H -0.299 1.299 30 H -0.276 1.276 31 H 0.041 0.959 32 H 0.056 0.944 33 H 0.086 0.914 34 H 0.108 0.892 35 H 0.091 0.909 36 H 0.175 0.825 37 H 0.210 0.790 38 H 0.159 0.841 39 H 0.168 0.832 40 H 0.147 0.853 41 H 0.117 0.883 42 H 0.047 0.953 43 H 0.083 0.917 44 H 0.033 0.967 45 H 0.032 0.968 46 H 0.370 0.630 47 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.902 0.156 -27.838 28.938 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.109 4.109 3 H 0.130 0.870 4 C -0.023 4.023 5 N -0.339 5.339 6 C 0.359 3.641 7 O -0.454 6.454 8 C -0.095 4.095 9 C -0.143 4.143 10 C -0.039 4.039 11 N -0.182 5.182 12 C -0.014 4.014 13 C -0.118 4.118 14 C -0.112 4.112 15 C -0.127 4.127 16 C -0.144 4.144 17 C -0.090 4.090 18 C -0.004 4.004 19 C -0.113 4.113 20 H 0.080 0.920 21 C 0.039 3.961 22 N -0.391 5.391 23 C -0.375 4.375 24 H 0.099 0.901 25 C -0.272 4.272 26 N -0.624 5.624 27 Si 0.804 3.196 28 H -0.201 1.201 29 H -0.226 1.226 30 H -0.202 1.202 31 H 0.060 0.940 32 H 0.075 0.925 33 H 0.104 0.896 34 H 0.126 0.874 35 H 0.109 0.891 36 H 0.192 0.808 37 H 0.227 0.773 38 H 0.176 0.824 39 H 0.185 0.815 40 H 0.165 0.835 41 H 0.135 0.865 42 H 0.066 0.934 43 H 0.101 0.899 44 H 0.051 0.949 45 H 0.050 0.950 46 H 0.202 0.798 47 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -7.849 -0.442 -28.343 29.413 hybrid contribution 0.917 -0.332 2.658 2.831 sum -6.932 -0.774 -25.685 26.615 Atomic orbital electron populations 1.21828 0.93101 1.01527 1.03201 1.22122 0.97193 1.00245 0.91326 0.86952 1.22733 0.96278 0.86259 0.97034 1.48777 1.52650 1.15023 1.17480 1.18163 0.79006 0.80797 0.86154 1.90773 1.44843 1.41427 1.68351 1.20240 1.00782 0.95248 0.93257 1.22889 0.97819 0.99408 0.94162 1.23636 0.91192 0.95070 0.94051 1.67881 1.13357 1.00134 1.36779 1.19126 0.98963 0.94993 0.88318 1.21151 0.98827 0.90102 1.01706 1.21336 0.97386 1.00141 0.92341 1.21357 0.96739 0.97525 0.97065 1.21333 0.99358 0.93590 1.00129 1.18807 1.00683 0.93995 0.95483 1.22360 0.97679 0.98610 0.81790 1.22331 0.96171 0.97276 0.95535 0.92019 1.20799 0.96947 0.93047 0.85292 1.42643 1.79355 1.05664 1.11483 1.19630 1.34489 0.91847 0.91509 0.90117 1.25623 1.03635 0.96226 1.01674 1.69832 1.56236 1.06221 1.30090 0.85191 0.78456 0.77053 0.78944 1.20117 1.22557 1.20219 0.94002 0.92500 0.89553 0.87405 0.89073 0.80810 0.77306 0.82386 0.81466 0.83486 0.86540 0.93423 0.89857 0.94909 0.95027 0.79841 0.94148 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.43 8.90 71.98 0.64 -1.79 16 2 C -0.09 -1.73 3.17 -9.90 -0.03 -1.76 16 3 H 0.11 1.76 7.85 -2.39 -0.02 1.74 16 4 C 0.10 1.67 4.99 86.53 0.43 2.10 16 5 N -0.61 -16.48 3.29 -813.43 -2.68 -19.16 16 6 C 0.57 17.91 7.25 86.80 0.63 18.54 16 7 O -0.57 -23.38 14.89 -3.84 -0.06 -23.44 16 8 C -0.08 -2.12 5.46 -19.68 -0.11 -2.22 16 9 C -0.12 -1.97 8.34 22.67 0.19 -1.78 16 10 C 0.13 1.85 11.14 85.07 0.95 2.80 16 11 N -0.47 -9.41 10.30 -188.73 -1.94 -11.35 16 12 C 0.11 2.44 6.61 40.35 0.27 2.70 16 13 C -0.10 -1.77 9.99 22.37 0.22 -1.55 16 14 C -0.09 -1.45 9.94 22.03 0.22 -1.23 16 15 C -0.11 -2.22 9.96 22.07 0.22 -2.00 16 16 C -0.13 -3.46 9.17 22.26 0.20 -3.26 16 17 C -0.09 -2.31 5.76 -21.09 -0.12 -2.43 16 18 C 0.12 3.87 6.46 86.61 0.56 4.43 16 19 C -0.09 -2.84 2.60 -9.70 -0.03 -2.86 16 20 H 0.06 2.16 7.86 -2.39 -0.02 2.14 16 21 C 0.17 6.15 5.59 86.38 0.48 6.63 16 22 N -0.75 -37.99 5.52 -343.46 -1.90 -39.88 16 23 C -0.24 -13.53 9.99 84.03 0.84 -12.69 16 24 H 0.08 4.22 7.83 -2.91 -0.02 4.20 16 25 C -0.08 -4.64 5.50 84.86 0.47 -4.17 16 26 N -0.97 -61.28 13.06 21.65 0.28 -60.99 16 27 Si 0.97 46.53 29.55 68.60 2.03 48.56 16 28 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 29 H -0.30 -14.54 7.11 99.48 0.71 -13.83 16 30 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 31 H 0.04 0.84 8.14 -2.39 -0.02 0.82 16 32 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 33 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 34 H 0.11 1.11 7.15 -2.39 -0.02 1.09 16 35 H 0.09 1.32 6.84 -2.39 -0.02 1.31 16 36 H 0.17 1.67 6.09 -2.91 -0.02 1.65 16 37 H 0.21 0.96 8.06 -2.91 -0.02 0.94 16 38 H 0.16 2.05 8.06 -2.91 -0.02 2.03 16 39 H 0.17 1.34 8.06 -2.91 -0.02 1.31 16 40 H 0.15 2.33 8.06 -2.91 -0.02 2.31 16 41 H 0.12 3.86 5.88 -2.91 -0.02 3.85 16 42 H 0.05 1.97 7.81 -2.39 -0.02 1.95 16 43 H 0.08 2.63 7.95 -2.39 -0.02 2.61 16 44 H 0.03 1.17 8.00 -2.39 -0.02 1.15 16 45 H 0.03 1.15 8.14 -2.39 -0.02 1.13 16 46 H 0.37 20.61 7.67 -92.71 -0.71 19.90 16 47 H 0.25 15.34 8.31 -92.71 -0.77 14.57 16 Total: -1.00 -79.67 382.80 2.05 -77.62 By element: Atomic # 1 Polarization: 28.92 SS G_CDS: 0.28 Total: 29.20 kcal Atomic # 6 Polarization: -6.58 SS G_CDS: 6.03 Total: -0.55 kcal Atomic # 7 Polarization: -125.16 SS G_CDS: -6.23 Total: -131.39 kcal Atomic # 8 Polarization: -23.38 SS G_CDS: -0.06 Total: -23.44 kcal Atomic # 14 Polarization: 46.53 SS G_CDS: 2.03 Total: 48.56 kcal Total: -79.67 2.05 -77.62 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001106390850.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.896 kcal (2) G-P(sol) polarization free energy of solvation -79.671 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.225 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.052 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.619 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.277 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds