Wall clock time and date at job start Tue Mar 31 2020 22:42:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09000 * 110.29186 * 2 1 4 4 C 1.54012 * 110.32386 * 237.87157 * 2 1 3 5 5 N 1.47490 * 107.08306 * 242.31193 * 4 2 1 6 6 C 1.34773 * 127.03330 * 154.51593 * 5 4 2 7 7 O 1.21542 * 119.99791 * 180.02562 * 6 5 4 8 8 C 1.47949 * 120.00128 * 0.02562 * 6 5 4 9 9 N 1.32198 * 120.15786 * 5.78431 * 8 6 5 10 10 C 1.32027 * 122.68819 * 179.97438 * 9 8 6 11 11 C 1.36690 * 122.02270 * 359.97438 * 10 9 8 12 12 C 1.40533 * 118.84817 * 0.03959 * 11 10 9 13 13 C 1.40318 * 122.21414 * 180.02562 * 12 11 10 14 14 C 1.36211 * 119.44842 * 179.97438 * 13 12 11 15 15 C 1.39378 * 121.00130 * 359.97438 * 14 13 12 16 16 C 1.36262 * 121.08471 * 0.02562 * 15 14 13 17 17 C 1.40088 * 119.53685 * 359.97438 * 16 15 14 18 18 C 1.48118 * 105.93219 * 334.77537 * 5 4 2 19 19 C 1.54602 * 103.41978 * 39.02543 * 18 5 4 20 20 H 1.09000 * 110.57381 * 81.17047 * 19 18 5 21 21 C 1.52999 * 110.98584 * 204.37047 * 19 18 5 22 22 N 1.46493 * 109.47665 * 288.65326 * 21 19 18 23 23 C 1.36934 * 120.00552 * 179.97438 * 22 21 19 24 24 H 1.08004 * 119.99832 * 0.02562 * 23 22 21 25 25 C 1.38810 * 120.00055 * 179.97438 * 23 22 21 26 26 N 1.31622 * 120.00430 * 0.02562 * 25 23 22 27 27 Si 1.86809 * 119.99738 * 180.02562 * 25 23 22 28 28 H 1.48503 * 109.47082 * 90.00245 * 27 25 23 29 29 H 1.48503 * 109.46880 * 209.99813 * 27 25 23 30 30 H 1.48490 * 109.47113 * 329.99832 * 27 25 23 31 31 H 1.08994 * 109.47259 * 180.68279 * 1 2 3 32 32 H 1.09003 * 109.46467 * 300.67996 * 1 2 3 33 33 H 1.08993 * 109.47372 * 60.67094 * 1 2 3 34 34 H 1.08998 * 109.91231 * 122.94654 * 4 2 1 35 35 H 1.08997 * 110.06960 * 1.75818 * 4 2 1 36 36 H 1.08000 * 118.99357 * 179.97438 * 10 9 8 37 37 H 1.08000 * 120.57280 * 180.02562 * 11 10 9 38 38 H 1.07998 * 120.27755 * 359.93354 * 13 12 11 39 39 H 1.08006 * 119.49313 * 180.02562 * 14 13 12 40 40 H 1.08000 * 119.45516 * 180.28747 * 15 14 13 41 41 H 1.07999 * 120.22746 * 180.02562 * 16 15 14 42 42 H 1.08996 * 110.66050 * 157.50895 * 18 5 4 43 43 H 1.08999 * 110.66478 * 280.63069 * 18 5 4 44 44 H 1.09006 * 109.47277 * 48.65434 * 21 19 18 45 45 H 1.09006 * 109.47308 * 168.64992 * 21 19 18 46 46 H 0.97007 * 119.99558 * 359.97438 * 22 21 19 47 47 H 0.96992 * 119.99986 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9080 1.0223 0.0000 4 6 2.0649 -0.7681 -1.2231 5 7 2.8297 -1.9204 -0.7105 6 6 3.0644 -3.0859 -1.3452 7 8 3.7152 -3.9550 -0.7990 8 6 2.5297 -3.3075 -2.7068 9 7 1.9202 -2.3257 -3.3489 10 6 1.4252 -2.4680 -4.5646 11 6 1.5098 -3.6488 -5.2480 12 6 2.1431 -4.7433 -4.6348 13 6 2.2698 -5.9872 -5.2717 14 6 2.8951 -7.0100 -4.6250 15 6 3.4107 -6.8392 -3.3414 16 6 3.3050 -5.6449 -2.6939 17 6 2.6685 -4.5698 -3.3275 18 6 3.2817 -1.5370 0.6469 19 6 2.0694 -0.7722 1.2261 20 1 1.3211 -1.4694 1.6029 21 6 2.5074 0.1963 2.3266 22 7 2.9004 -0.5621 3.5167 23 6 3.3321 0.0967 4.6368 24 1 3.3825 1.1755 4.6430 25 6 3.7040 -0.6220 5.7647 26 7 3.6421 -1.9368 5.7573 27 14 4.2923 0.2768 7.2930 28 1 3.1314 0.5743 8.1700 29 1 5.2612 -0.5765 8.0268 30 1 4.9520 1.5469 6.8971 31 1 -0.3633 -1.0275 0.0122 32 1 -0.3632 0.5244 0.8839 33 1 -0.3634 0.5033 -0.8959 34 1 2.7165 -0.1220 -1.8113 35 1 1.2352 -1.1170 -1.8378 36 1 0.9384 -1.6257 -5.0335 37 1 1.0969 -3.7390 -6.2419 38 1 1.8744 -6.1326 -6.2661 39 1 2.9934 -7.9676 -5.1146 40 1 3.9058 -7.6658 -2.8536 41 1 3.7100 -5.5278 -1.6996 42 1 3.4981 -2.4224 1.2445 43 1 4.1541 -0.8859 0.5922 44 1 3.3542 0.7862 1.9756 45 1 1.6802 0.8610 2.5760 46 1 2.8547 -1.5311 3.5112 47 1 3.9023 -2.4389 6.5453 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001106591501.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:42:19 Heat of formation + Delta-G solvation = 46.617656 kcal Electronic energy + Delta-G solvation = -28812.128195 eV Core-core repulsion = 24960.381917 eV Total energy + Delta-G solvation = -3851.746278 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -41.38208 -39.72450 -37.87351 -37.63486 -34.62554 -33.26099 -32.77981 -31.43814 -31.33955 -30.13299 -28.94529 -26.55319 -25.83590 -24.64406 -23.78728 -23.27895 -22.60212 -21.17406 -19.94961 -19.80799 -18.25691 -17.60037 -17.19641 -16.79187 -16.14425 -16.05078 -15.79472 -14.99000 -14.80438 -14.40493 -14.34908 -14.02494 -13.95190 -13.71135 -13.43441 -13.31683 -13.13366 -12.90508 -12.77048 -12.44950 -12.36007 -12.22151 -11.89811 -11.74423 -11.62759 -11.16407 -11.07096 -10.82366 -10.51924 -10.45838 -10.42472 -10.27831 -10.09379 -9.92282 -9.62077 -9.43826 -9.39509 -8.84530 -8.60348 -8.31522 -6.88800 -5.72193 -3.01393 -0.19222 0.59963 1.48034 2.49179 2.86411 3.05956 3.46513 3.51354 3.53410 3.84781 3.87769 4.24756 4.37676 4.48712 4.59994 4.60939 4.71626 4.82313 4.84343 4.96078 5.01133 5.04569 5.13541 5.39891 5.46034 5.53273 5.59123 5.62173 5.64229 5.72080 5.76179 5.81804 5.92643 5.98002 6.06333 6.09015 6.13028 6.17037 6.23214 6.26739 6.31410 6.35588 6.45068 6.56032 6.61917 6.76207 6.89701 7.43325 7.61808 7.73336 8.12899 8.46106 9.57273 10.14814 10.49203 11.50490 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.017390 B = 0.002531 C = 0.002257 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1609.697100 B =11061.229647 C =12404.769820 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.105 4.105 3 H 0.086 0.914 4 C 0.109 3.891 5 N -0.594 5.594 6 C 0.584 3.416 7 O -0.530 6.530 8 C 0.133 3.867 9 N -0.452 5.452 10 C 0.070 3.930 11 C -0.134 4.134 12 C -0.030 4.030 13 C -0.122 4.122 14 C -0.092 4.092 15 C -0.124 4.124 16 C -0.088 4.088 17 C -0.072 4.072 18 C 0.113 3.887 19 C -0.102 4.102 20 H 0.083 0.917 21 C 0.165 3.835 22 N -0.733 5.733 23 C -0.240 4.240 24 H 0.070 0.930 25 C -0.014 4.014 26 N -0.932 5.932 27 Si 0.906 3.094 28 H -0.290 1.290 29 H -0.292 1.292 30 H -0.282 1.282 31 H 0.053 0.947 32 H 0.061 0.939 33 H 0.053 0.947 34 H 0.066 0.934 35 H 0.097 0.903 36 H 0.160 0.840 37 H 0.141 0.859 38 H 0.132 0.868 39 H 0.127 0.873 40 H 0.129 0.871 41 H 0.174 0.826 42 H 0.091 0.909 43 H 0.078 0.922 44 H 0.022 0.978 45 H 0.024 0.976 46 H 0.384 0.616 47 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.242 -4.807 -27.361 28.472 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.124 4.124 3 H 0.104 0.896 4 C -0.014 4.014 5 N -0.325 5.325 6 C 0.371 3.629 7 O -0.408 6.408 8 C -0.018 4.018 9 N -0.164 5.164 10 C -0.075 4.075 11 C -0.154 4.154 12 C -0.035 4.035 13 C -0.140 4.140 14 C -0.112 4.112 15 C -0.142 4.142 16 C -0.107 4.107 17 C -0.075 4.075 18 C -0.009 4.009 19 C -0.122 4.122 20 H 0.101 0.899 21 C 0.037 3.963 22 N -0.377 5.377 23 C -0.371 4.371 24 H 0.088 0.912 25 C -0.210 4.210 26 N -0.580 5.580 27 Si 0.738 3.262 28 H -0.218 1.218 29 H -0.218 1.218 30 H -0.208 1.208 31 H 0.072 0.928 32 H 0.080 0.920 33 H 0.072 0.928 34 H 0.084 0.916 35 H 0.115 0.885 36 H 0.177 0.823 37 H 0.159 0.841 38 H 0.150 0.850 39 H 0.145 0.855 40 H 0.147 0.853 41 H 0.191 0.809 42 H 0.109 0.891 43 H 0.097 0.903 44 H 0.039 0.961 45 H 0.041 0.959 46 H 0.218 0.782 47 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -5.954 -4.349 -26.678 27.678 hybrid contribution 0.305 -0.609 0.270 0.732 sum -5.649 -4.958 -26.408 27.457 Atomic orbital electron populations 1.21802 0.94293 1.01799 1.01724 1.22173 0.96341 0.99797 0.94125 0.89577 1.22477 0.96499 0.86513 0.95868 1.48672 1.51603 1.14239 1.17960 1.17317 0.80503 0.81247 0.83809 1.90618 1.41222 1.42249 1.66675 1.21372 0.96169 0.89672 0.94600 1.67535 1.07431 1.32171 1.09241 1.22252 0.97700 0.97323 0.90262 1.22128 0.98895 0.93309 1.01098 1.18194 0.97181 0.94937 0.93232 1.20911 1.01015 0.91932 1.00172 1.21094 0.96125 0.98987 0.94957 1.21147 0.99969 0.98123 0.94961 1.22240 0.94942 0.91091 1.02446 1.18685 0.99941 0.94660 0.94216 1.22617 0.97133 1.00314 0.80797 1.22513 0.96935 0.97901 0.94813 0.89858 1.20626 0.96591 0.92729 0.86312 1.42382 1.79241 1.05953 1.10168 1.19207 1.35891 0.91240 0.90768 0.91191 1.24749 1.02443 0.95488 0.98297 1.69661 1.54417 1.04519 1.29425 0.86199 0.78147 0.78471 0.83421 1.21775 1.21798 1.20786 0.92826 0.92035 0.92753 0.91565 0.88456 0.82275 0.84109 0.85050 0.85525 0.85278 0.80876 0.89087 0.90344 0.96055 0.95856 0.78213 0.93502 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.56 8.90 37.16 0.33 -1.23 16 2 C -0.10 -1.32 3.17 -89.24 -0.28 -1.60 16 3 H 0.09 1.02 7.85 -51.93 -0.41 0.61 16 4 C 0.11 1.37 5.65 -2.97 -0.02 1.35 16 5 N -0.59 -9.08 3.29 -171.04 -0.56 -9.64 16 6 C 0.58 9.43 7.85 -12.28 -0.10 9.33 16 7 O -0.53 -9.73 13.65 5.33 0.07 -9.65 16 8 C 0.13 1.85 6.78 -82.55 -0.56 1.29 16 9 N -0.45 -5.36 6.79 -9.81 -0.07 -5.43 16 10 C 0.07 0.62 11.06 -18.03 -0.20 0.42 16 11 C -0.13 -1.09 9.88 -39.28 -0.39 -1.47 16 12 C -0.03 -0.31 5.75 -106.83 -0.61 -0.92 16 13 C -0.12 -1.00 9.82 -39.53 -0.39 -1.38 16 14 C -0.09 -0.75 9.95 -39.89 -0.40 -1.14 16 15 C -0.12 -1.22 9.95 -39.87 -0.40 -1.61 16 16 C -0.09 -1.12 9.23 -39.60 -0.37 -1.49 16 17 C -0.07 -0.93 5.76 -106.60 -0.61 -1.54 16 18 C 0.11 1.90 6.44 -2.31 -0.01 1.89 16 19 C -0.10 -1.65 2.60 -88.93 -0.23 -1.89 16 20 H 0.08 1.46 7.86 -51.93 -0.41 1.05 16 21 C 0.17 3.25 5.58 -4.05 -0.02 3.23 16 22 N -0.73 -18.56 5.52 -59.91 -0.33 -18.89 16 23 C -0.24 -6.74 9.99 -15.06 -0.15 -6.90 16 24 H 0.07 1.90 7.83 -52.48 -0.41 1.49 16 25 C -0.01 -0.40 5.50 -17.43 -0.10 -0.49 16 26 N -0.93 -28.60 13.06 55.49 0.72 -27.87 16 27 Si 0.91 22.65 29.55 -169.99 -5.02 17.62 16 28 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 29 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 30 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 31 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 33 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 34 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.10 1.17 5.62 -51.93 -0.29 0.87 16 36 H 0.16 0.89 8.06 -52.49 -0.42 0.47 16 37 H 0.14 0.66 8.06 -52.49 -0.42 0.24 16 38 H 0.13 0.69 8.06 -52.49 -0.42 0.26 16 39 H 0.13 0.66 8.06 -52.48 -0.42 0.24 16 40 H 0.13 1.00 8.06 -52.49 -0.42 0.58 16 41 H 0.17 2.52 4.96 -52.49 -0.26 2.26 16 42 H 0.09 1.76 7.85 -51.93 -0.41 1.35 16 43 H 0.08 1.32 7.94 -51.93 -0.41 0.91 16 44 H 0.02 0.42 8.00 -51.93 -0.42 0.01 16 45 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 46 H 0.38 10.33 7.67 -40.82 -0.31 10.02 16 47 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 LS Contribution 381.96 15.07 5.76 5.76 Total: -1.00 -33.28 381.96 -10.62 -43.91 By element: Atomic # 1 Polarization: 15.07 SS G_CDS: -6.69 Total: 8.38 kcal Atomic # 6 Polarization: 0.33 SS G_CDS: -4.50 Total: -4.17 kcal Atomic # 7 Polarization: -61.60 SS G_CDS: -0.24 Total: -61.84 kcal Atomic # 8 Polarization: -9.73 SS G_CDS: 0.07 Total: -9.65 kcal Atomic # 14 Polarization: 22.65 SS G_CDS: -5.02 Total: 17.62 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -33.28 -10.62 -43.91 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001106591501.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.524 kcal (2) G-P(sol) polarization free energy of solvation -33.281 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.242 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.625 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.906 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.618 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds