Wall clock time and date at job start Tue Mar 31 2020 22:42:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09000 * 110.29186 * 2 1 4 4 C 1.54012 * 110.32386 * 237.87157 * 2 1 3 5 5 N 1.47490 * 107.08306 * 242.31193 * 4 2 1 6 6 C 1.34773 * 127.03330 * 154.51593 * 5 4 2 7 7 O 1.21542 * 119.99791 * 180.02562 * 6 5 4 8 8 C 1.47949 * 120.00128 * 0.02562 * 6 5 4 9 9 N 1.32198 * 120.15786 * 5.78431 * 8 6 5 10 10 C 1.32027 * 122.68819 * 179.97438 * 9 8 6 11 11 C 1.36690 * 122.02270 * 359.97438 * 10 9 8 12 12 C 1.40533 * 118.84817 * 0.03959 * 11 10 9 13 13 C 1.40318 * 122.21414 * 180.02562 * 12 11 10 14 14 C 1.36211 * 119.44842 * 179.97438 * 13 12 11 15 15 C 1.39378 * 121.00130 * 359.97438 * 14 13 12 16 16 C 1.36262 * 121.08471 * 0.02562 * 15 14 13 17 17 C 1.40088 * 119.53685 * 359.97438 * 16 15 14 18 18 C 1.48118 * 105.93219 * 334.77537 * 5 4 2 19 19 C 1.54602 * 103.41978 * 39.02543 * 18 5 4 20 20 H 1.09000 * 110.57381 * 81.17047 * 19 18 5 21 21 C 1.52999 * 110.98584 * 204.37047 * 19 18 5 22 22 N 1.46493 * 109.47665 * 288.65326 * 21 19 18 23 23 C 1.36934 * 120.00552 * 179.97438 * 22 21 19 24 24 H 1.08004 * 119.99832 * 0.02562 * 23 22 21 25 25 C 1.38810 * 120.00055 * 179.97438 * 23 22 21 26 26 N 1.31622 * 120.00430 * 0.02562 * 25 23 22 27 27 Si 1.86809 * 119.99738 * 180.02562 * 25 23 22 28 28 H 1.48503 * 109.47082 * 90.00245 * 27 25 23 29 29 H 1.48503 * 109.46880 * 209.99813 * 27 25 23 30 30 H 1.48490 * 109.47113 * 329.99832 * 27 25 23 31 31 H 1.08994 * 109.47259 * 180.68279 * 1 2 3 32 32 H 1.09003 * 109.46467 * 300.67996 * 1 2 3 33 33 H 1.08993 * 109.47372 * 60.67094 * 1 2 3 34 34 H 1.08998 * 109.91231 * 122.94654 * 4 2 1 35 35 H 1.08997 * 110.06960 * 1.75818 * 4 2 1 36 36 H 1.08000 * 118.99357 * 179.97438 * 10 9 8 37 37 H 1.08000 * 120.57280 * 180.02562 * 11 10 9 38 38 H 1.07998 * 120.27755 * 359.93354 * 13 12 11 39 39 H 1.08006 * 119.49313 * 180.02562 * 14 13 12 40 40 H 1.08000 * 119.45516 * 180.28747 * 15 14 13 41 41 H 1.07999 * 120.22746 * 180.02562 * 16 15 14 42 42 H 1.08996 * 110.66050 * 157.50895 * 18 5 4 43 43 H 1.08999 * 110.66478 * 280.63069 * 18 5 4 44 44 H 1.09006 * 109.47277 * 48.65434 * 21 19 18 45 45 H 1.09006 * 109.47308 * 168.64992 * 21 19 18 46 46 H 0.97007 * 119.99558 * 359.97438 * 22 21 19 47 47 H 0.96992 * 119.99986 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9080 1.0223 0.0000 4 6 2.0649 -0.7681 -1.2231 5 7 2.8297 -1.9204 -0.7105 6 6 3.0644 -3.0859 -1.3452 7 8 3.7152 -3.9550 -0.7990 8 6 2.5297 -3.3075 -2.7068 9 7 1.9202 -2.3257 -3.3489 10 6 1.4252 -2.4680 -4.5646 11 6 1.5098 -3.6488 -5.2480 12 6 2.1431 -4.7433 -4.6348 13 6 2.2698 -5.9872 -5.2717 14 6 2.8951 -7.0100 -4.6250 15 6 3.4107 -6.8392 -3.3414 16 6 3.3050 -5.6449 -2.6939 17 6 2.6685 -4.5698 -3.3275 18 6 3.2817 -1.5370 0.6469 19 6 2.0694 -0.7722 1.2261 20 1 1.3211 -1.4694 1.6029 21 6 2.5074 0.1963 2.3266 22 7 2.9004 -0.5621 3.5167 23 6 3.3321 0.0967 4.6368 24 1 3.3825 1.1755 4.6430 25 6 3.7040 -0.6220 5.7647 26 7 3.6421 -1.9368 5.7573 27 14 4.2923 0.2768 7.2930 28 1 3.1314 0.5743 8.1700 29 1 5.2612 -0.5765 8.0268 30 1 4.9520 1.5469 6.8971 31 1 -0.3633 -1.0275 0.0122 32 1 -0.3632 0.5244 0.8839 33 1 -0.3634 0.5033 -0.8959 34 1 2.7165 -0.1220 -1.8113 35 1 1.2352 -1.1170 -1.8378 36 1 0.9384 -1.6257 -5.0335 37 1 1.0969 -3.7390 -6.2419 38 1 1.8744 -6.1326 -6.2661 39 1 2.9934 -7.9676 -5.1146 40 1 3.9058 -7.6658 -2.8536 41 1 3.7100 -5.5278 -1.6996 42 1 3.4981 -2.4224 1.2445 43 1 4.1541 -0.8859 0.5922 44 1 3.3542 0.7862 1.9756 45 1 1.6802 0.8610 2.5760 46 1 2.8547 -1.5311 3.5112 47 1 3.9023 -2.4389 6.5453 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001106591501.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:42:18 Heat of formation + Delta-G solvation = 26.551318 kcal Electronic energy + Delta-G solvation = -28812.998337 eV Core-core repulsion = 24960.381917 eV Total energy + Delta-G solvation = -3852.616420 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -42.24401 -40.84357 -39.12536 -38.38589 -36.45758 -34.32883 -33.89414 -33.05717 -32.19002 -31.12809 -30.33410 -27.70666 -27.18141 -25.84930 -24.83235 -24.50192 -23.61433 -22.53928 -21.18674 -20.91742 -19.30915 -18.93538 -18.35033 -17.89101 -17.32051 -17.06739 -16.75805 -16.57184 -15.94702 -15.57070 -15.52281 -15.22076 -14.96982 -14.85690 -14.72844 -14.65684 -14.26674 -14.07129 -13.81911 -13.65682 -13.42722 -13.25242 -13.09556 -12.93193 -12.74533 -12.65085 -12.48505 -12.38484 -12.11926 -11.95516 -11.75868 -11.53923 -11.48144 -11.20515 -11.03796 -10.93711 -10.37463 -10.16267 -9.79703 -9.06939 -9.00122 -7.94180 -5.23846 -0.99881 -0.13056 0.67153 1.46715 1.49201 1.57617 1.58222 1.72659 2.17053 2.56135 2.94910 3.05700 3.38956 3.46977 3.58384 3.61574 3.68810 3.79768 3.82075 3.88594 4.10484 4.22500 4.26868 4.28189 4.38425 4.42331 4.46850 4.52713 4.56350 4.72191 4.76216 4.80521 4.83758 4.87929 4.90463 5.04457 5.08231 5.09941 5.17589 5.21216 5.26077 5.34298 5.39191 5.49167 5.51264 5.56361 5.62010 5.88243 6.27078 6.39265 6.65732 6.97908 7.32970 8.08850 8.31200 9.29599 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.017390 B = 0.002531 C = 0.002257 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1609.697100 B =11061.229647 C =12404.769820 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.094 4.094 3 H 0.104 0.896 4 C 0.114 3.886 5 N -0.598 5.598 6 C 0.573 3.427 7 O -0.570 6.570 8 C 0.093 3.907 9 N -0.452 5.452 10 C 0.054 3.946 11 C -0.103 4.103 12 C -0.052 4.052 13 C -0.106 4.106 14 C -0.101 4.101 15 C -0.114 4.114 16 C -0.135 4.135 17 C -0.086 4.086 18 C 0.116 3.884 19 C -0.091 4.091 20 H 0.065 0.935 21 C 0.166 3.834 22 N -0.748 5.748 23 C -0.242 4.242 24 H 0.080 0.920 25 C -0.080 4.080 26 N -0.973 5.973 27 Si 0.976 3.024 28 H -0.286 1.286 29 H -0.298 1.298 30 H -0.267 1.267 31 H 0.042 0.958 32 H 0.057 0.943 33 H 0.083 0.917 34 H 0.080 0.920 35 H 0.108 0.892 36 H 0.199 0.801 37 H 0.188 0.812 38 H 0.174 0.826 39 H 0.162 0.838 40 H 0.141 0.859 41 H 0.140 0.860 42 H 0.052 0.948 43 H 0.076 0.924 44 H 0.029 0.971 45 H 0.033 0.967 46 H 0.371 0.629 47 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.994 -3.549 -31.545 32.735 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.114 4.114 3 H 0.122 0.878 4 C -0.007 4.007 5 N -0.328 5.328 6 C 0.363 3.637 7 O -0.450 6.450 8 C -0.056 4.056 9 N -0.164 5.164 10 C -0.093 4.093 11 C -0.123 4.123 12 C -0.058 4.058 13 C -0.123 4.123 14 C -0.120 4.120 15 C -0.132 4.132 16 C -0.154 4.154 17 C -0.089 4.089 18 C -0.006 4.006 19 C -0.111 4.111 20 H 0.084 0.916 21 C 0.040 3.960 22 N -0.391 5.391 23 C -0.374 4.374 24 H 0.098 0.902 25 C -0.272 4.272 26 N -0.623 5.623 27 Si 0.805 3.195 28 H -0.213 1.213 29 H -0.225 1.225 30 H -0.191 1.191 31 H 0.062 0.938 32 H 0.076 0.924 33 H 0.102 0.898 34 H 0.098 0.902 35 H 0.126 0.874 36 H 0.215 0.785 37 H 0.206 0.794 38 H 0.191 0.809 39 H 0.180 0.820 40 H 0.159 0.841 41 H 0.157 0.843 42 H 0.071 0.929 43 H 0.094 0.906 44 H 0.047 0.953 45 H 0.051 0.949 46 H 0.202 0.798 47 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -7.723 -3.035 -30.891 31.986 hybrid contribution 0.806 -1.052 1.366 1.903 sum -6.917 -4.087 -29.525 30.599 Atomic orbital electron populations 1.21778 0.92811 1.01549 1.03022 1.22183 0.97490 0.99946 0.91731 0.87801 1.22613 0.96730 0.85554 0.95824 1.48754 1.51885 1.15031 1.17125 1.17944 0.79999 0.80752 0.85036 1.90603 1.42945 1.43452 1.68036 1.20894 0.99680 0.91162 0.93874 1.67414 1.06729 1.31657 1.10612 1.22941 0.97800 0.99207 0.89304 1.22674 0.95652 0.91681 1.02264 1.18592 0.97872 0.96971 0.92320 1.21428 0.99020 0.90505 1.01349 1.21466 0.95740 1.00803 0.93962 1.21421 0.98713 0.97151 0.95896 1.22017 0.98147 0.93135 1.02109 1.18854 1.00289 0.94098 0.95699 1.22376 0.97627 0.98713 0.81884 1.22321 0.96111 0.97285 0.95396 0.91646 1.20781 0.96861 0.93047 0.85315 1.42642 1.79310 1.05684 1.11426 1.19667 1.34407 0.91843 0.91489 0.90180 1.25634 1.03640 0.96263 1.01668 1.69845 1.56300 1.06196 1.30008 0.85104 0.77450 0.77580 0.79413 1.21282 1.22482 1.19139 0.93847 0.92369 0.89808 0.90205 0.87393 0.78476 0.79433 0.80877 0.81999 0.84076 0.84253 0.92937 0.90553 0.95286 0.94880 0.79770 0.94125 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.79 8.90 71.98 0.64 -2.15 16 2 C -0.09 -2.28 3.17 -9.90 -0.03 -2.31 16 3 H 0.10 2.20 7.85 -2.39 -0.02 2.18 16 4 C 0.11 2.80 5.65 86.53 0.49 3.28 16 5 N -0.60 -19.53 3.29 -813.34 -2.68 -22.21 16 6 C 0.57 20.39 7.85 86.82 0.68 21.07 16 7 O -0.57 -23.90 13.65 -3.85 -0.05 -23.96 16 8 C 0.09 2.70 6.78 42.43 0.29 2.99 16 9 N -0.45 -10.21 6.79 -184.95 -1.26 -11.46 16 10 C 0.05 0.77 11.06 84.30 0.93 1.70 16 11 C -0.10 -1.21 9.88 22.47 0.22 -0.99 16 12 C -0.05 -0.94 5.75 -21.29 -0.12 -1.06 16 13 C -0.11 -1.30 9.82 22.30 0.22 -1.08 16 14 C -0.10 -1.35 9.95 22.07 0.22 -1.13 16 15 C -0.11 -2.26 9.95 22.08 0.22 -2.04 16 16 C -0.13 -3.76 9.23 22.26 0.21 -3.55 16 17 C -0.09 -2.30 5.76 -21.14 -0.12 -2.42 16 18 C 0.12 4.27 6.44 86.61 0.56 4.83 16 19 C -0.09 -3.09 2.60 -9.70 -0.03 -3.11 16 20 H 0.07 2.44 7.86 -2.39 -0.02 2.43 16 21 C 0.17 6.63 5.58 86.38 0.48 7.12 16 22 N -0.75 -39.30 5.52 -343.45 -1.90 -41.20 16 23 C -0.24 -13.84 9.99 84.03 0.84 -13.00 16 24 H 0.08 4.32 7.83 -2.91 -0.02 4.30 16 25 C -0.08 -4.75 5.50 84.86 0.47 -4.29 16 26 N -0.97 -62.11 13.06 21.65 0.28 -61.83 16 27 Si 0.98 47.39 29.55 68.60 2.03 49.42 16 28 H -0.29 -13.56 7.11 99.48 0.71 -12.85 16 29 H -0.30 -14.66 7.11 99.48 0.71 -13.96 16 30 H -0.27 -12.13 7.11 99.48 0.71 -11.43 16 31 H 0.04 0.99 8.14 -2.39 -0.02 0.97 16 32 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 33 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 34 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 35 H 0.11 2.44 5.62 -2.39 -0.01 2.43 16 36 H 0.20 1.19 8.06 -2.91 -0.02 1.17 16 37 H 0.19 0.42 8.06 -2.91 -0.02 0.40 16 38 H 0.17 0.68 8.06 -2.91 -0.02 0.65 16 39 H 0.16 1.01 8.06 -2.91 -0.02 0.98 16 40 H 0.14 2.27 8.06 -2.91 -0.02 2.25 16 41 H 0.14 4.79 4.96 -2.99 -0.01 4.77 16 42 H 0.05 2.30 7.85 -2.39 -0.02 2.28 16 43 H 0.08 2.77 7.94 -2.39 -0.02 2.75 16 44 H 0.03 1.14 8.00 -2.38 -0.02 1.12 16 45 H 0.03 1.28 8.14 -2.38 -0.02 1.26 16 46 H 0.37 21.22 7.67 -92.70 -0.71 20.51 16 47 H 0.25 15.49 8.31 -92.71 -0.77 14.72 16 Total: -1.00 -79.08 381.96 2.87 -76.21 By element: Atomic # 1 Polarization: 30.88 SS G_CDS: 0.28 Total: 31.16 kcal Atomic # 6 Polarization: -2.30 SS G_CDS: 6.16 Total: 3.87 kcal Atomic # 7 Polarization: -131.15 SS G_CDS: -5.55 Total: -136.70 kcal Atomic # 8 Polarization: -23.90 SS G_CDS: -0.05 Total: -23.96 kcal Atomic # 14 Polarization: 47.39 SS G_CDS: 2.03 Total: 49.42 kcal Total: -79.08 2.87 -76.21 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001106591501.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.763 kcal (2) G-P(sol) polarization free energy of solvation -79.080 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.682 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.869 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.211 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.551 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds