Wall clock time and date at job start Tue Mar 31 2020 22:44:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08999 * 110.29069 * 2 1 4 4 C 1.54001 * 110.32599 * 237.86650 * 2 1 3 5 5 N 1.47486 * 107.08599 * 242.30743 * 4 2 1 6 6 C 1.34777 * 127.03725 * 154.51437 * 5 4 2 7 7 O 1.21580 * 119.99925 * 185.24752 * 6 5 4 8 8 C 1.47564 * 119.99608 * 5.25104 * 6 5 4 9 9 C 1.38705 * 120.43562 * 38.53591 * 8 6 5 10 10 C 1.39001 * 120.74949 * 180.02562 * 9 8 6 11 11 C 1.36347 * 121.19150 * 0.02562 * 10 9 8 12 12 C 1.40354 * 119.92979 * 359.97438 * 11 10 9 13 13 C 1.40686 * 122.10713 * 180.02562 * 12 11 10 14 14 C 1.36266 * 118.66528 * 179.97438 * 13 12 11 15 15 N 1.32505 * 121.84240 * 0.02562 * 14 13 12 16 16 C 1.31315 * 122.71935 * 359.97438 * 15 14 13 17 17 C 1.40130 * 119.91722 * 0.02562 * 16 15 14 18 18 C 1.48125 * 105.93077 * 334.78138 * 5 4 2 19 19 C 1.54599 * 103.42272 * 39.02227 * 18 5 4 20 20 H 1.09001 * 110.57533 * 81.17163 * 19 18 5 21 21 C 1.53000 * 110.98886 * 204.37547 * 19 18 5 22 22 N 1.46498 * 109.47196 * 288.65376 * 21 19 18 23 23 C 1.36934 * 120.00553 * 180.02562 * 22 21 19 24 24 H 1.08009 * 119.99445 * 359.97438 * 23 22 21 25 25 C 1.38805 * 120.00388 * 179.97438 * 23 22 21 26 26 N 1.31621 * 120.00125 * 359.97438 * 25 23 22 27 27 Si 1.86804 * 119.99789 * 179.97438 * 25 23 22 28 28 H 1.48494 * 109.47454 * 59.99934 * 27 25 23 29 29 H 1.48510 * 109.46885 * 179.97438 * 27 25 23 30 30 H 1.48497 * 109.46992 * 299.99503 * 27 25 23 31 31 H 1.09005 * 109.47062 * 180.68139 * 1 2 3 32 32 H 1.09003 * 109.47233 * 300.67980 * 1 2 3 33 33 H 1.08994 * 109.47751 * 60.68247 * 1 2 3 34 34 H 1.09006 * 109.91240 * 122.95043 * 4 2 1 35 35 H 1.09002 * 109.91665 * 1.66964 * 4 2 1 36 36 H 1.08000 * 119.62623 * 0.04577 * 9 8 6 37 37 H 1.07996 * 119.40150 * 180.02562 * 10 9 8 38 38 H 1.07998 * 120.03472 * 179.72889 * 11 10 9 39 39 H 1.07994 * 120.66566 * 359.95948 * 13 12 11 40 40 H 1.08000 * 119.07585 * 179.97438 * 14 13 12 41 41 H 1.08001 * 120.04317 * 180.02562 * 16 15 14 42 42 H 1.08998 * 110.66209 * 157.50532 * 18 5 4 43 43 H 1.09004 * 110.66128 * 280.62075 * 18 5 4 44 44 H 1.09007 * 109.46884 * 48.65025 * 21 19 18 45 45 H 1.09000 * 109.47070 * 168.64843 * 21 19 18 46 46 H 0.97005 * 119.99858 * 359.97438 * 22 21 19 47 47 H 0.97003 * 119.99878 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9080 1.0223 0.0000 4 6 2.0649 -0.7681 -1.2229 5 7 2.8298 -1.9203 -0.7103 6 6 3.0645 -3.0859 -1.3449 7 8 3.6332 -3.9902 -0.7644 8 6 2.6314 -3.2644 -2.7442 9 6 2.7351 -2.2195 -3.6505 10 6 2.3286 -2.3803 -4.9700 11 6 1.8172 -3.5644 -5.4121 12 6 1.6947 -4.6478 -4.5282 13 6 1.1741 -5.8898 -4.9353 14 6 1.0872 -6.8943 -4.0187 15 7 1.4775 -6.7306 -2.7631 16 6 1.9722 -5.5996 -2.3153 17 6 2.1037 -4.5038 -3.1787 18 6 3.2817 -1.5368 0.6472 19 6 2.0693 -0.7720 1.2263 20 1 1.3210 -1.4693 1.6032 21 6 2.5071 0.1967 2.3267 22 7 2.9002 -0.5617 3.5169 23 6 3.3309 0.0972 4.6374 24 1 3.3812 1.1761 4.6435 25 6 3.7028 -0.6213 5.7652 26 7 3.6411 -1.9361 5.7579 27 14 4.2910 0.2777 7.2934 28 1 3.2172 1.1801 7.7810 29 1 4.6249 -0.7100 8.3510 30 1 5.4979 1.0774 6.9635 31 1 -0.3633 -1.0276 0.0122 32 1 -0.3634 0.5244 0.8838 33 1 -0.3634 0.5031 -0.8960 34 1 2.7166 -0.1220 -1.8112 35 1 1.2333 -1.1173 -1.8350 36 1 3.1365 -1.2704 -3.3274 37 1 2.4195 -1.5523 -5.6574 38 1 1.5031 -3.6674 -6.4402 39 1 0.8497 -6.0439 -5.9538 40 1 0.6881 -7.8503 -4.3239 41 1 2.2774 -5.5141 -1.2828 42 1 3.4981 -2.4222 1.2449 43 1 4.1542 -0.8856 0.5925 44 1 3.3540 0.7865 1.9757 45 1 1.6799 0.8612 2.5760 46 1 2.8547 -1.5307 3.5115 47 1 3.9013 -2.4382 6.5460 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001106827402.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:44:28 Heat of formation + Delta-G solvation = 14.099522 kcal Electronic energy + Delta-G solvation = -28833.484842 eV Core-core repulsion = 24980.328472 eV Total energy + Delta-G solvation = -3853.156370 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -42.18833 -40.98609 -39.16551 -38.21492 -36.47231 -34.42276 -33.84909 -33.06657 -32.25297 -31.27707 -30.25803 -27.61019 -27.17932 -25.63373 -25.03298 -24.54067 -23.88457 -22.47764 -21.17169 -20.69755 -19.28909 -18.98913 -18.42286 -17.95623 -17.41188 -17.09620 -16.75670 -16.43877 -15.81658 -15.62539 -15.44838 -15.26037 -15.15374 -15.08496 -14.88553 -14.56149 -14.40490 -14.04162 -13.77903 -13.63527 -13.34206 -13.23651 -13.03597 -13.00436 -12.87010 -12.71082 -12.51970 -12.46507 -12.18749 -11.95207 -11.76029 -11.55395 -11.46388 -11.26831 -11.02710 -10.92334 -10.50827 -10.19630 -9.81820 -9.11460 -9.00486 -7.94460 -5.24291 -0.89578 -0.14796 0.55839 1.46277 1.50072 1.56222 1.56450 1.78446 2.08745 2.55977 3.00991 3.21580 3.39064 3.44104 3.52203 3.55619 3.71869 3.73126 3.77345 3.84393 3.93176 4.14613 4.18190 4.23728 4.36242 4.38859 4.49222 4.53354 4.58380 4.63754 4.64726 4.77146 4.78552 4.82786 4.85384 4.86870 5.00888 5.04033 5.06665 5.19521 5.22062 5.25693 5.32957 5.34064 5.48713 5.53215 5.61059 5.76865 6.26509 6.41013 6.90402 6.97346 7.32371 8.09084 8.30376 9.29086 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.017404 B = 0.002524 C = 0.002327 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1608.477342 B =11089.656189 C =12029.135696 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.090 4.090 3 H 0.111 0.889 4 C 0.100 3.900 5 N -0.610 5.610 6 C 0.566 3.434 7 O -0.583 6.583 8 C -0.124 4.124 9 C -0.060 4.060 10 C -0.101 4.101 11 C -0.073 4.073 12 C -0.047 4.047 13 C -0.134 4.134 14 C 0.050 3.950 15 N -0.513 5.513 16 C 0.116 3.884 17 C -0.092 4.092 18 C 0.117 3.883 19 C -0.094 4.094 20 H 0.060 0.940 21 C 0.166 3.834 22 N -0.749 5.749 23 C -0.243 4.243 24 H 0.081 0.919 25 C -0.081 4.081 26 N -0.974 5.974 27 Si 0.976 3.024 28 H -0.275 1.275 29 H -0.299 1.299 30 H -0.276 1.276 31 H 0.041 0.959 32 H 0.055 0.945 33 H 0.087 0.913 34 H 0.105 0.895 35 H 0.093 0.907 36 H 0.157 0.843 37 H 0.180 0.820 38 H 0.179 0.821 39 H 0.186 0.814 40 H 0.180 0.820 41 H 0.141 0.859 42 H 0.045 0.955 43 H 0.082 0.918 44 H 0.033 0.967 45 H 0.032 0.968 46 H 0.370 0.630 47 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.261 3.259 -32.824 34.004 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.109 4.109 3 H 0.129 0.871 4 C -0.021 4.021 5 N -0.342 5.342 6 C 0.357 3.643 7 O -0.464 6.464 8 C -0.129 4.129 9 C -0.079 4.079 10 C -0.120 4.120 11 C -0.091 4.091 12 C -0.052 4.052 13 C -0.153 4.153 14 C -0.094 4.094 15 N -0.222 5.222 16 C -0.053 4.053 17 C -0.095 4.095 18 C -0.005 4.005 19 C -0.114 4.114 20 H 0.078 0.922 21 C 0.039 3.961 22 N -0.392 5.392 23 C -0.375 4.375 24 H 0.099 0.901 25 C -0.273 4.273 26 N -0.624 5.624 27 Si 0.804 3.196 28 H -0.201 1.201 29 H -0.226 1.226 30 H -0.202 1.202 31 H 0.060 0.940 32 H 0.074 0.926 33 H 0.106 0.894 34 H 0.123 0.877 35 H 0.112 0.888 36 H 0.174 0.826 37 H 0.197 0.803 38 H 0.196 0.804 39 H 0.203 0.797 40 H 0.197 0.803 41 H 0.158 0.842 42 H 0.063 0.937 43 H 0.100 0.900 44 H 0.051 0.949 45 H 0.050 0.950 46 H 0.201 0.799 47 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -8.053 2.082 -32.011 33.073 hybrid contribution 0.728 -0.068 1.572 1.734 sum -7.325 2.014 -30.438 31.372 Atomic orbital electron populations 1.21825 0.93081 1.01515 1.03190 1.22121 0.97211 1.00193 0.91398 0.87053 1.22695 0.96270 0.86224 0.96888 1.48797 1.52812 1.15228 1.17323 1.18357 0.78731 0.80557 0.86671 1.90783 1.45198 1.41608 1.68816 1.19649 1.05130 0.95352 0.92801 1.21907 0.94829 0.97551 0.93601 1.21402 0.96504 0.99208 0.94846 1.21657 0.96001 0.90877 1.00539 1.18524 0.98183 0.96731 0.91788 1.22387 0.98632 0.91548 1.02735 1.22818 0.97440 1.01201 0.87899 1.67443 1.10516 1.25353 1.18876 1.23287 0.93641 0.88297 1.00090 1.18856 1.00932 0.94236 0.95501 1.22331 0.97602 0.98485 0.82117 1.22333 0.96191 0.97264 0.95586 0.92154 1.20800 0.96908 0.93050 0.85305 1.42657 1.79349 1.05664 1.11513 1.19635 1.34481 0.91852 0.91502 0.90070 1.25643 1.03652 0.96226 1.01734 1.69846 1.56242 1.06265 1.30087 0.85177 0.78470 0.77031 0.78879 1.20080 1.22587 1.20156 0.94025 0.92616 0.89415 0.87670 0.88840 0.82578 0.80290 0.80400 0.79702 0.80331 0.84176 0.93663 0.90031 0.94938 0.95042 0.79880 0.94165 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.45 8.90 71.98 0.64 -1.81 16 2 C -0.09 -1.78 3.17 -9.90 -0.03 -1.81 16 3 H 0.11 1.80 7.85 -2.39 -0.02 1.78 16 4 C 0.10 1.73 4.98 86.53 0.43 2.16 16 5 N -0.61 -16.96 3.29 -813.77 -2.68 -19.64 16 6 C 0.57 18.15 7.19 86.70 0.62 18.78 16 7 O -0.58 -24.60 14.91 -3.97 -0.06 -24.66 16 8 C -0.12 -3.00 5.42 -19.89 -0.11 -3.11 16 9 C -0.06 -0.84 8.24 22.56 0.19 -0.65 16 10 C -0.10 -0.76 9.93 22.01 0.22 -0.55 16 11 C -0.07 -0.64 9.79 22.34 0.22 -0.42 16 12 C -0.05 -0.81 5.74 -21.30 -0.12 -0.93 16 13 C -0.13 -1.91 9.88 22.41 0.22 -1.69 16 14 C 0.05 1.00 11.07 84.13 0.93 1.93 16 15 N -0.51 -15.17 10.30 -195.73 -2.02 -17.19 16 16 C 0.12 3.72 10.41 85.23 0.89 4.61 16 17 C -0.09 -2.38 5.76 -21.14 -0.12 -2.51 16 18 C 0.12 3.97 6.46 86.61 0.56 4.53 16 19 C -0.09 -2.94 2.60 -9.70 -0.03 -2.96 16 20 H 0.06 2.18 7.86 -2.39 -0.02 2.16 16 21 C 0.17 6.29 5.58 86.38 0.48 6.77 16 22 N -0.75 -38.70 5.52 -343.45 -1.90 -40.60 16 23 C -0.24 -13.71 9.99 84.03 0.84 -12.87 16 24 H 0.08 4.30 7.83 -2.91 -0.02 4.27 16 25 C -0.08 -4.76 5.50 84.86 0.47 -4.29 16 26 N -0.97 -62.24 13.06 21.65 0.28 -61.96 16 27 Si 0.98 47.09 29.55 68.60 2.03 49.12 16 28 H -0.27 -12.62 7.11 99.48 0.71 -11.91 16 29 H -0.30 -14.72 7.11 99.48 0.71 -14.02 16 30 H -0.28 -12.69 7.11 99.48 0.71 -11.99 16 31 H 0.04 0.85 8.14 -2.38 -0.02 0.83 16 32 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 33 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 34 H 0.11 1.11 7.13 -2.38 -0.02 1.10 16 35 H 0.09 1.33 6.86 -2.39 -0.02 1.31 16 36 H 0.16 1.48 6.08 -2.91 -0.02 1.46 16 37 H 0.18 -0.12 8.06 -2.91 -0.02 -0.14 16 38 H 0.18 0.09 8.06 -2.91 -0.02 0.07 16 39 H 0.19 0.84 8.06 -2.91 -0.02 0.82 16 40 H 0.18 2.36 8.06 -2.91 -0.02 2.34 16 41 H 0.14 5.31 5.91 -2.91 -0.02 5.29 16 42 H 0.04 1.93 7.81 -2.39 -0.02 1.92 16 43 H 0.08 2.66 7.95 -2.39 -0.02 2.64 16 44 H 0.03 1.19 8.00 -2.38 -0.02 1.17 16 45 H 0.03 1.17 8.14 -2.39 -0.02 1.15 16 46 H 0.37 21.02 7.67 -92.70 -0.71 20.31 16 47 H 0.25 15.56 8.31 -92.71 -0.77 14.79 16 Total: -1.00 -84.62 382.64 2.24 -82.38 By element: Atomic # 1 Polarization: 27.10 SS G_CDS: 0.28 Total: 27.39 kcal Atomic # 6 Polarization: -1.14 SS G_CDS: 6.30 Total: 5.16 kcal Atomic # 7 Polarization: -133.08 SS G_CDS: -6.31 Total: -139.38 kcal Atomic # 8 Polarization: -24.60 SS G_CDS: -0.06 Total: -24.66 kcal Atomic # 14 Polarization: 47.09 SS G_CDS: 2.03 Total: 49.12 kcal Total: -84.62 2.24 -82.38 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001106827402.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.477 kcal (2) G-P(sol) polarization free energy of solvation -84.619 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.859 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.241 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.378 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.100 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds