Wall clock time and date at job start Tue Mar 31 2020 23:23:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09002 * 109.46630 * 2 1 4 4 N 1.46492 * 109.47126 * 239.99804 * 2 1 3 5 5 C 1.34774 * 120.00075 * 84.99841 * 4 2 1 6 6 N 1.34779 * 120.00026 * 179.97438 * 5 4 2 7 7 O 1.21585 * 120.00096 * 0.02562 * 5 4 2 8 8 C 1.50703 * 109.47063 * 119.99447 * 2 1 3 9 9 O 1.21283 * 119.99488 * 120.00024 * 8 2 1 10 10 N 1.34777 * 120.00290 * 300.00464 * 8 2 1 11 11 C 1.46498 * 119.99828 * 180.27728 * 10 8 2 12 12 H 1.08998 * 110.85930 * 325.42294 * 11 10 8 13 13 C 1.54629 * 110.97099 * 89.21170 * 11 10 8 14 14 C 1.51286 * 104.19499 * 142.91594 * 13 11 10 15 15 O 1.21273 * 124.94520 * 163.71387 * 14 13 11 16 16 N 1.34419 * 110.11438 * 343.74532 * 14 13 11 17 17 C 1.46499 * 124.35003 * 179.58852 * 16 14 13 18 18 C 1.53946 * 113.74029 * 36.65186 * 17 16 14 19 19 N 1.47589 * 86.11491 * 222.05041 * 18 17 16 20 20 C 1.36938 * 134.49147 * 204.64343 * 19 18 17 21 21 H 1.07995 * 120.00252 * 180.02562 * 20 19 18 22 22 C 1.38813 * 119.99747 * 359.97438 * 20 19 18 23 23 N 1.31621 * 120.00235 * 359.97438 * 22 20 19 24 24 Si 1.86806 * 120.00099 * 180.02562 * 22 20 19 25 25 H 1.48503 * 109.46588 * 359.97438 * 24 22 20 26 26 H 1.48491 * 109.47337 * 119.99755 * 24 22 20 27 27 H 1.48501 * 109.47182 * 240.00400 * 24 22 20 28 28 C 1.47577 * 91.01717 * 24.64062 * 19 18 17 29 29 C 1.46823 * 111.31922 * 359.62802 * 16 14 13 30 30 H 1.09001 * 109.46852 * 300.00183 * 1 2 3 31 31 H 1.08993 * 109.46731 * 60.00419 * 1 2 3 32 32 H 1.09003 * 109.46582 * 180.02562 * 1 2 3 33 33 H 0.97006 * 120.00200 * 264.99683 * 4 2 1 34 34 H 0.96997 * 120.00111 * 0.02562 * 6 5 4 35 35 H 0.97007 * 120.00102 * 180.02562 * 6 5 4 36 36 H 0.97001 * 119.99727 * 359.97438 * 10 8 2 37 37 H 1.08996 * 110.48968 * 261.59166 * 13 11 10 38 38 H 1.09001 * 110.48823 * 24.24074 * 13 11 10 39 39 H 1.09003 * 112.94500 * 168.38952 * 17 16 14 40 40 H 1.08999 * 113.77405 * 336.34672 * 18 17 16 41 41 H 1.09001 * 113.76804 * 107.75111 * 18 17 16 42 42 H 0.97002 * 119.99543 * 179.97438 * 23 22 20 43 43 H 1.08998 * 113.76872 * 221.06115 * 28 19 18 44 44 H 1.08994 * 113.76676 * 89.66081 * 28 19 18 45 45 H 1.09002 * 110.23601 * 257.98290 * 29 16 14 46 46 H 1.09000 * 110.28789 * 135.96175 * 29 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6906 -1.1961 5 6 2.1471 -0.0183 -2.3571 6 7 2.5968 -0.6536 -3.4574 7 8 1.8583 1.1615 -2.4116 8 6 2.0324 -0.7103 1.2306 9 8 2.7297 -1.6964 1.1193 10 7 1.7068 -0.2498 2.4546 11 6 2.2001 -0.9368 3.6508 12 1 2.2574 -2.0126 3.4847 13 6 3.5710 -0.3708 4.0883 14 6 3.5156 -0.3914 5.6000 15 8 4.4778 -0.2950 6.3317 16 7 2.2446 -0.5329 6.0140 17 6 1.8356 -0.5994 7.4192 18 6 2.6530 0.3178 8.3468 19 7 2.6563 -0.8126 9.2957 20 6 2.7863 -0.9247 10.6543 21 1 2.7537 -1.8979 11.1214 22 6 2.9611 0.2125 11.4309 23 7 3.0024 1.3984 10.8615 24 14 3.1392 0.0596 13.2842 25 1 3.0592 -1.3715 13.6726 26 1 4.4516 0.6140 13.7028 27 1 2.0476 0.8145 13.9503 28 6 2.4631 -1.7735 8.1924 29 6 1.3186 -0.6130 4.8774 30 1 -0.3633 0.5139 0.8900 31 1 -0.3632 0.5137 -0.8900 32 1 -0.3632 -1.0277 0.0005 33 1 2.2491 -1.6318 -1.1525 34 1 2.8275 -1.5947 -3.4138 35 1 2.6898 -0.1696 -4.2929 36 1 1.1493 0.5390 2.5436 37 1 4.3792 -1.0070 3.7275 38 1 3.6960 0.6493 3.7250 39 1 0.7572 -0.5126 7.5524 40 1 3.6402 0.5682 7.9584 41 1 2.1010 1.1880 8.7019 42 1 3.1242 2.1930 11.4044 43 1 1.7594 -2.5730 8.4243 44 1 3.3945 -2.1374 7.7587 45 1 0.8116 0.3415 4.7361 46 1 0.5902 -1.4076 5.0387 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001108537644.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:23:41 Heat of formation + Delta-G solvation = -27.339083 kcal Electronic energy + Delta-G solvation = -29352.984416 eV Core-core repulsion = 25087.181870 eV Total energy + Delta-G solvation = -4265.802546 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.08143 -40.40086 -39.49106 -37.32452 -36.51768 -35.37104 -34.38126 -34.06896 -32.23999 -31.03033 -29.90398 -27.62947 -27.12938 -25.10588 -24.73273 -23.43923 -22.30631 -21.40926 -20.84125 -20.40559 -19.17897 -18.36595 -18.08052 -17.15811 -16.78983 -16.66127 -16.26874 -16.08588 -15.61579 -15.24942 -15.08637 -14.80219 -14.65833 -14.24671 -14.02804 -13.91553 -13.63523 -13.54559 -13.36881 -13.05806 -12.85059 -12.44107 -12.19906 -12.07181 -11.87851 -11.62309 -11.42481 -11.20164 -10.85968 -10.76759 -10.71449 -10.39619 -10.18505 -10.13833 -9.96911 -9.80830 -9.56630 -9.50426 -9.21405 -8.66633 -8.21607 -6.81779 -5.72820 -3.04787 2.07256 2.13893 2.70985 2.81262 2.89656 3.25765 3.41940 3.47265 3.49577 3.97967 4.06642 4.22941 4.42100 4.50943 4.54514 4.65700 4.74699 4.82400 5.06928 5.21936 5.26224 5.31392 5.33423 5.52470 5.55566 5.63243 5.65171 5.66313 5.82634 5.89615 5.99303 6.23645 6.27929 6.46852 6.50309 6.56016 6.84911 6.94302 7.28879 7.46191 7.48454 7.58665 7.63385 7.65609 8.01133 8.16806 8.52216 9.08336 9.74261 10.63144 11.44461 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.038878 B = 0.001864 C = 0.001856 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 720.023178 B =15019.862596 C =15079.986326 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.144 3.856 3 H 0.118 0.882 4 N -0.729 5.729 5 C 0.710 3.290 6 N -0.865 5.865 7 O -0.595 6.595 8 C 0.516 3.484 9 O -0.531 6.531 10 N -0.713 5.713 11 C 0.135 3.865 12 H 0.113 0.887 13 C -0.168 4.168 14 C 0.515 3.485 15 O -0.506 6.506 16 N -0.606 5.606 17 C 0.098 3.902 18 C 0.151 3.849 19 N -0.605 5.605 20 C -0.220 4.220 21 H 0.081 0.919 22 C -0.008 4.008 23 N -0.919 5.919 24 Si 0.913 3.087 25 H -0.279 1.279 26 H -0.290 1.290 27 H -0.290 1.290 28 C 0.111 3.889 29 C 0.099 3.901 30 H 0.074 0.926 31 H 0.076 0.924 32 H 0.064 0.936 33 H 0.407 0.593 34 H 0.399 0.601 35 H 0.416 0.584 36 H 0.406 0.594 37 H 0.103 0.897 38 H 0.104 0.896 39 H 0.106 0.894 40 H 0.059 0.941 41 H 0.070 0.930 42 H 0.253 0.747 43 H 0.043 0.957 44 H 0.039 0.961 45 H 0.074 0.926 46 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.761 -4.761 -28.817 30.221 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.034 3.966 3 H 0.136 0.864 4 N -0.387 5.387 5 C 0.408 3.592 6 N -0.433 5.433 7 O -0.473 6.473 8 C 0.301 3.699 9 O -0.407 6.407 10 N -0.365 5.365 11 C 0.029 3.971 12 H 0.131 0.869 13 C -0.209 4.209 14 C 0.301 3.699 15 O -0.380 6.380 16 N -0.341 5.341 17 C -0.004 4.004 18 C 0.026 3.974 19 N -0.331 5.331 20 C -0.348 4.348 21 H 0.099 0.901 22 C -0.205 4.205 23 N -0.566 5.566 24 Si 0.744 3.256 25 H -0.204 1.204 26 H -0.217 1.217 27 H -0.217 1.217 28 C -0.016 4.016 29 C -0.026 4.026 30 H 0.093 0.907 31 H 0.095 0.905 32 H 0.083 0.917 33 H 0.243 0.757 34 H 0.227 0.773 35 H 0.248 0.752 36 H 0.242 0.758 37 H 0.122 0.878 38 H 0.123 0.877 39 H 0.124 0.876 40 H 0.077 0.923 41 H 0.088 0.912 42 H 0.063 0.937 43 H 0.061 0.939 44 H 0.057 0.943 45 H 0.092 0.908 46 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -7.004 -4.322 -27.932 29.120 hybrid contribution 0.182 -0.353 0.685 0.792 sum -6.822 -4.675 -27.247 28.475 Atomic orbital electron populations 1.22180 0.92625 1.03261 1.03932 1.20591 0.95612 0.97911 0.82453 0.86432 1.44763 1.71537 1.14469 1.07927 1.15852 0.77943 0.84819 0.80584 1.42942 1.73274 1.15073 1.12036 1.90984 1.57373 1.14250 1.84682 1.20598 0.79997 0.84605 0.84716 1.90729 1.37326 1.26128 1.86498 1.45845 1.53609 1.32241 1.04853 1.21846 0.92929 0.98658 0.83632 0.86872 1.22840 0.99022 1.04361 0.94708 1.20580 0.83090 0.76360 0.89862 1.90791 1.38288 1.48520 1.60385 1.48514 1.06822 1.72495 1.06299 1.24105 0.99879 1.00998 0.75461 1.22791 0.97624 0.92321 0.84712 1.45671 1.84799 1.02168 1.00470 1.19035 1.42979 0.93329 0.79419 0.90121 1.24807 1.02266 0.95258 0.98167 1.69841 1.55890 0.97003 1.33865 0.86025 0.77348 0.77305 0.84952 1.20447 1.21728 1.21720 1.22931 0.97056 0.93178 0.88445 1.22208 0.92847 1.02453 0.85072 0.90697 0.90516 0.91666 0.75673 0.77347 0.75173 0.75771 0.87825 0.87731 0.87613 0.92322 0.91173 0.93700 0.93912 0.94336 0.90772 0.89553 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.77 9.38 37.16 0.35 -0.42 16 2 C 0.14 0.92 2.98 -69.08 -0.21 0.72 16 3 H 0.12 0.82 7.58 -51.93 -0.39 0.43 16 4 N -0.73 -4.88 4.96 -59.81 -0.30 -5.18 16 5 C 0.71 5.77 8.80 -86.92 -0.77 5.00 16 6 N -0.87 -3.62 8.88 27.63 0.25 -3.37 16 7 O -0.59 -7.24 16.84 5.29 0.09 -7.16 16 8 C 0.52 3.92 7.22 -10.98 -0.08 3.84 16 9 O -0.53 -5.77 15.53 5.55 0.09 -5.68 16 10 N -0.71 -4.30 5.06 -52.22 -0.26 -4.57 16 11 C 0.13 1.14 3.47 -66.30 -0.23 0.91 16 12 H 0.11 1.04 7.64 -51.93 -0.40 0.64 16 13 C -0.17 -1.90 6.59 -26.74 -0.18 -2.08 16 14 C 0.52 8.49 7.44 -10.86 -0.08 8.41 16 15 O -0.51 -11.16 14.64 5.56 0.08 -11.08 16 16 N -0.61 -8.91 3.15 -166.58 -0.53 -9.44 16 17 C 0.10 1.82 4.82 -70.14 -0.34 1.49 16 18 C 0.15 3.75 6.88 -2.97 -0.02 3.73 16 19 N -0.60 -16.24 3.70 -178.08 -0.66 -16.89 16 20 C -0.22 -6.39 10.70 -15.06 -0.16 -6.55 16 21 H 0.08 2.25 7.83 -52.49 -0.41 1.84 16 22 C -0.01 -0.25 5.50 -17.43 -0.10 -0.34 16 23 N -0.92 -28.11 11.38 55.49 0.63 -27.48 16 24 Si 0.91 22.68 29.55 -169.99 -5.02 17.66 16 25 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 26 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 27 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 28 C 0.11 2.39 8.45 -2.97 -0.03 2.37 16 29 C 0.10 0.88 7.08 -3.09 -0.02 0.86 16 30 H 0.07 0.21 7.56 -51.93 -0.39 -0.18 16 31 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 33 H 0.41 2.34 7.80 -40.82 -0.32 2.02 16 34 H 0.40 0.61 8.84 -40.82 -0.36 0.25 16 35 H 0.42 1.35 8.93 -40.82 -0.36 0.99 16 36 H 0.41 1.40 7.81 -40.82 -0.32 1.08 16 37 H 0.10 1.21 8.14 -51.93 -0.42 0.79 16 38 H 0.10 1.07 8.08 -51.93 -0.42 0.65 16 39 H 0.11 1.76 8.14 -51.93 -0.42 1.34 16 40 H 0.06 1.61 5.58 -51.93 -0.29 1.32 16 41 H 0.07 1.88 7.16 -51.93 -0.37 1.51 16 42 H 0.25 7.45 8.31 -40.82 -0.34 7.11 16 43 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 44 H 0.04 0.88 7.41 -51.93 -0.38 0.50 16 45 H 0.07 0.52 7.78 -51.93 -0.40 0.11 16 46 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 LS Contribution 381.51 15.07 5.75 5.75 Total: -1.00 -40.24 381.51 -8.23 -48.48 By element: Atomic # 1 Polarization: 7.53 SS G_CDS: -6.50 Total: 1.03 kcal Atomic # 6 Polarization: 19.79 SS G_CDS: -1.85 Total: 17.94 kcal Atomic # 7 Polarization: -66.07 SS G_CDS: -0.87 Total: -66.94 kcal Atomic # 8 Polarization: -24.17 SS G_CDS: 0.26 Total: -23.92 kcal Atomic # 14 Polarization: 22.68 SS G_CDS: -5.02 Total: 17.66 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -40.24 -8.23 -48.48 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001108537644.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.137 kcal (2) G-P(sol) polarization free energy of solvation -40.242 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.104 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.235 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.476 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.339 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds