Wall clock time and date at job start Tue Mar 31 2020 23:23:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09002 * 109.46630 * 2 1 4 4 N 1.46492 * 109.47126 * 239.99804 * 2 1 3 5 5 C 1.34774 * 120.00075 * 84.99841 * 4 2 1 6 6 N 1.34779 * 120.00026 * 179.97438 * 5 4 2 7 7 O 1.21585 * 120.00096 * 0.02562 * 5 4 2 8 8 C 1.50703 * 109.47063 * 119.99447 * 2 1 3 9 9 O 1.21283 * 119.99488 * 120.00024 * 8 2 1 10 10 N 1.34777 * 120.00290 * 300.00464 * 8 2 1 11 11 C 1.46498 * 119.99828 * 180.27728 * 10 8 2 12 12 H 1.08998 * 110.85930 * 325.42294 * 11 10 8 13 13 C 1.54629 * 110.97099 * 89.21170 * 11 10 8 14 14 C 1.51286 * 104.19499 * 142.91594 * 13 11 10 15 15 O 1.21273 * 124.94520 * 163.71387 * 14 13 11 16 16 N 1.34419 * 110.11438 * 343.74532 * 14 13 11 17 17 C 1.46499 * 124.35003 * 179.58852 * 16 14 13 18 18 C 1.53946 * 113.74029 * 36.65186 * 17 16 14 19 19 N 1.47589 * 86.11491 * 222.05041 * 18 17 16 20 20 C 1.36938 * 134.49147 * 204.64343 * 19 18 17 21 21 H 1.07995 * 120.00252 * 180.02562 * 20 19 18 22 22 C 1.38813 * 119.99747 * 359.97438 * 20 19 18 23 23 N 1.31621 * 120.00235 * 359.97438 * 22 20 19 24 24 Si 1.86806 * 120.00099 * 180.02562 * 22 20 19 25 25 H 1.48503 * 109.46588 * 359.97438 * 24 22 20 26 26 H 1.48491 * 109.47337 * 119.99755 * 24 22 20 27 27 H 1.48501 * 109.47182 * 240.00400 * 24 22 20 28 28 C 1.47577 * 91.01717 * 24.64062 * 19 18 17 29 29 C 1.46823 * 111.31922 * 359.62802 * 16 14 13 30 30 H 1.09001 * 109.46852 * 300.00183 * 1 2 3 31 31 H 1.08993 * 109.46731 * 60.00419 * 1 2 3 32 32 H 1.09003 * 109.46582 * 180.02562 * 1 2 3 33 33 H 0.97006 * 120.00200 * 264.99683 * 4 2 1 34 34 H 0.96997 * 120.00111 * 0.02562 * 6 5 4 35 35 H 0.97007 * 120.00102 * 180.02562 * 6 5 4 36 36 H 0.97001 * 119.99727 * 359.97438 * 10 8 2 37 37 H 1.08996 * 110.48968 * 261.59166 * 13 11 10 38 38 H 1.09001 * 110.48823 * 24.24074 * 13 11 10 39 39 H 1.09003 * 112.94500 * 168.38952 * 17 16 14 40 40 H 1.08999 * 113.77405 * 336.34672 * 18 17 16 41 41 H 1.09001 * 113.76804 * 107.75111 * 18 17 16 42 42 H 0.97002 * 119.99543 * 179.97438 * 23 22 20 43 43 H 1.08998 * 113.76872 * 221.06115 * 28 19 18 44 44 H 1.08994 * 113.76676 * 89.66081 * 28 19 18 45 45 H 1.09002 * 110.23601 * 257.98290 * 29 16 14 46 46 H 1.09000 * 110.28789 * 135.96175 * 29 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6906 -1.1961 5 6 2.1471 -0.0183 -2.3571 6 7 2.5968 -0.6536 -3.4574 7 8 1.8583 1.1615 -2.4116 8 6 2.0324 -0.7103 1.2306 9 8 2.7297 -1.6964 1.1193 10 7 1.7068 -0.2498 2.4546 11 6 2.2001 -0.9368 3.6508 12 1 2.2574 -2.0126 3.4847 13 6 3.5710 -0.3708 4.0883 14 6 3.5156 -0.3914 5.6000 15 8 4.4778 -0.2950 6.3317 16 7 2.2446 -0.5329 6.0140 17 6 1.8356 -0.5994 7.4192 18 6 2.6530 0.3178 8.3468 19 7 2.6563 -0.8126 9.2957 20 6 2.7863 -0.9247 10.6543 21 1 2.7537 -1.8979 11.1214 22 6 2.9611 0.2125 11.4309 23 7 3.0024 1.3984 10.8615 24 14 3.1392 0.0596 13.2842 25 1 3.0592 -1.3715 13.6726 26 1 4.4516 0.6140 13.7028 27 1 2.0476 0.8145 13.9503 28 6 2.4631 -1.7735 8.1924 29 6 1.3186 -0.6130 4.8774 30 1 -0.3633 0.5139 0.8900 31 1 -0.3632 0.5137 -0.8900 32 1 -0.3632 -1.0277 0.0005 33 1 2.2491 -1.6318 -1.1525 34 1 2.8275 -1.5947 -3.4138 35 1 2.6898 -0.1696 -4.2929 36 1 1.1493 0.5390 2.5436 37 1 4.3792 -1.0070 3.7275 38 1 3.6960 0.6493 3.7250 39 1 0.7572 -0.5126 7.5524 40 1 3.6402 0.5682 7.9584 41 1 2.1010 1.1880 8.7019 42 1 3.1242 2.1930 11.4044 43 1 1.7594 -2.5730 8.4243 44 1 3.3945 -2.1374 7.7587 45 1 0.8116 0.3415 4.7361 46 1 0.5902 -1.4076 5.0387 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001108537644.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:23:40 Heat of formation + Delta-G solvation = -63.307723 kcal Electronic energy + Delta-G solvation = -29354.544133 eV Core-core repulsion = 25087.181870 eV Total energy + Delta-G solvation = -4267.362263 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.97250 -41.30385 -40.26393 -38.95833 -37.68700 -35.96943 -35.34553 -34.67248 -34.15754 -32.00431 -30.72671 -29.16914 -28.34083 -26.60647 -25.72306 -25.14133 -23.05842 -22.15899 -22.05748 -21.35772 -19.85488 -19.66402 -18.79661 -18.60641 -17.89331 -17.71044 -17.26290 -17.02050 -16.65354 -16.38958 -16.13451 -15.83797 -15.63251 -15.44524 -15.24574 -15.03762 -14.74002 -14.60971 -14.36596 -14.04987 -13.65378 -13.60811 -13.42857 -13.25584 -13.24836 -12.85080 -12.78184 -12.60283 -12.54875 -12.23314 -12.01809 -11.87712 -11.51410 -11.48557 -11.14641 -10.99306 -10.70772 -10.64993 -10.16498 -10.05716 -9.56473 -8.93966 -7.93102 -5.27604 1.43001 1.45261 1.46314 1.55392 1.56095 1.61341 1.98109 2.16206 2.29382 2.48418 3.25357 3.31683 3.45832 3.47679 3.57810 3.69502 3.79058 3.92849 4.04470 4.10592 4.20772 4.26182 4.53258 4.59410 4.67613 4.73008 4.77505 4.82799 4.87192 4.89759 4.93018 5.21551 5.23493 5.29381 5.35595 5.39642 5.48533 5.85458 5.86035 5.89991 6.06031 6.26202 6.42453 6.88568 7.03633 7.11079 7.23301 7.57182 7.64511 8.52668 9.24309 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.038878 B = 0.001864 C = 0.001856 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 720.023178 B =15019.862596 C =15079.986326 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.145 3.855 3 H 0.113 0.887 4 N -0.725 5.725 5 C 0.704 3.296 6 N -0.849 5.849 7 O -0.639 6.639 8 C 0.522 3.478 9 O -0.563 6.563 10 N -0.696 5.696 11 C 0.152 3.848 12 H 0.113 0.887 13 C -0.156 4.156 14 C 0.503 3.497 15 O -0.574 6.574 16 N -0.605 5.605 17 C 0.138 3.862 18 C 0.146 3.854 19 N -0.636 5.636 20 C -0.236 4.236 21 H 0.086 0.914 22 C -0.070 4.070 23 N -0.954 5.954 24 Si 0.984 3.016 25 H -0.263 1.263 26 H -0.296 1.296 27 H -0.285 1.285 28 C 0.111 3.889 29 C 0.098 3.902 30 H 0.099 0.901 31 H 0.062 0.938 32 H 0.068 0.932 33 H 0.412 0.588 34 H 0.413 0.587 35 H 0.422 0.578 36 H 0.423 0.577 37 H 0.099 0.901 38 H 0.119 0.881 39 H 0.140 0.860 40 H 0.024 0.976 41 H 0.042 0.958 42 H 0.249 0.751 43 H 0.070 0.930 44 H 0.021 0.979 45 H 0.106 0.894 46 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.059 -5.950 -30.201 32.383 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.035 3.965 3 H 0.131 0.869 4 N -0.383 5.383 5 C 0.402 3.598 6 N -0.417 5.417 7 O -0.521 6.521 8 C 0.308 3.692 9 O -0.441 6.441 10 N -0.349 5.349 11 C 0.046 3.954 12 H 0.131 0.869 13 C -0.197 4.197 14 C 0.291 3.709 15 O -0.453 6.453 16 N -0.338 5.338 17 C 0.034 3.966 18 C 0.019 3.981 19 N -0.362 5.362 20 C -0.364 4.364 21 H 0.104 0.896 22 C -0.263 4.263 23 N -0.603 5.603 24 Si 0.812 3.188 25 H -0.187 1.187 26 H -0.224 1.224 27 H -0.212 1.212 28 C -0.015 4.015 29 C -0.024 4.024 30 H 0.118 0.882 31 H 0.081 0.919 32 H 0.087 0.913 33 H 0.250 0.750 34 H 0.244 0.756 35 H 0.255 0.745 36 H 0.262 0.738 37 H 0.117 0.883 38 H 0.137 0.863 39 H 0.158 0.842 40 H 0.042 0.958 41 H 0.060 0.940 42 H 0.057 0.943 43 H 0.088 0.912 44 H 0.039 0.961 45 H 0.124 0.876 46 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -9.362 -5.567 -29.395 31.348 hybrid contribution 0.953 -0.025 1.015 1.392 sum -8.409 -5.592 -28.380 30.123 Atomic orbital electron populations 1.22149 0.91014 1.03675 1.04488 1.20642 0.96764 0.97321 0.81752 0.86904 1.44746 1.71196 1.14635 1.07720 1.16067 0.77908 0.84404 0.81440 1.42804 1.71882 1.15785 1.11264 1.90951 1.59452 1.16231 1.85457 1.20741 0.79257 0.84009 0.85188 1.90729 1.38792 1.27648 1.86933 1.45627 1.53230 1.32478 1.03613 1.21585 0.90919 0.98617 0.84273 0.86884 1.22773 1.01027 1.05407 0.90502 1.21492 0.82701 0.74904 0.91799 1.90757 1.40601 1.51417 1.62532 1.48461 1.07671 1.71374 1.06288 1.23388 1.00145 0.96185 0.76896 1.22597 0.96766 0.92246 0.86454 1.46114 1.84822 1.04441 1.00839 1.19479 1.42181 0.93643 0.81137 0.89621 1.25735 1.02574 0.94952 1.03007 1.70051 1.57293 0.97577 1.35366 0.84928 0.76735 0.78006 0.79132 1.18686 1.22382 1.21153 1.23025 0.97029 0.94183 0.87248 1.22579 0.91966 1.05423 0.82407 0.88247 0.91885 0.91258 0.75027 0.75631 0.74518 0.73774 0.88269 0.86323 0.84247 0.95799 0.93999 0.94251 0.91183 0.96128 0.87555 0.86630 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.05 9.38 71.98 0.68 -0.38 16 2 C 0.14 1.55 2.98 44.25 0.13 1.68 16 3 H 0.11 1.38 7.58 -2.39 -0.02 1.36 16 4 N -0.72 -8.62 4.96 -461.41 -2.29 -10.90 16 5 C 0.70 10.70 8.80 179.05 1.58 12.28 16 6 N -0.85 -5.93 8.88 -184.75 -1.64 -7.57 16 7 O -0.64 -15.28 16.84 -3.98 -0.07 -15.34 16 8 C 0.52 6.49 7.22 87.66 0.63 7.13 16 9 O -0.56 -10.99 15.53 -3.04 -0.05 -11.04 16 10 N -0.70 -5.76 5.06 -437.53 -2.21 -7.97 16 11 C 0.15 2.04 3.47 46.05 0.16 2.20 16 12 H 0.11 1.67 7.64 -2.39 -0.02 1.66 16 13 C -0.16 -3.28 6.59 30.59 0.20 -3.08 16 14 C 0.50 16.51 7.44 87.90 0.65 17.17 16 15 O -0.57 -26.66 14.64 -3.01 -0.04 -26.70 16 16 N -0.60 -16.61 3.15 -799.53 -2.52 -19.13 16 17 C 0.14 4.94 4.82 46.75 0.23 5.16 16 18 C 0.15 7.45 6.88 86.48 0.60 8.05 16 19 N -0.64 -34.75 3.70 -717.31 -2.65 -37.41 16 20 C -0.24 -13.92 10.70 84.03 0.90 -13.02 16 21 H 0.09 4.80 7.83 -2.91 -0.02 4.77 16 22 C -0.07 -4.16 5.50 84.86 0.47 -3.70 16 23 N -0.95 -60.37 11.38 21.65 0.25 -60.12 16 24 Si 0.98 47.36 29.55 68.60 2.03 49.38 16 25 H -0.26 -11.77 7.11 99.48 0.71 -11.07 16 26 H -0.30 -14.45 7.11 99.48 0.71 -13.74 16 27 H -0.28 -13.36 7.11 99.48 0.71 -12.65 16 28 C 0.11 4.74 8.45 86.48 0.73 5.47 16 29 C 0.10 1.31 7.08 86.82 0.61 1.93 16 30 H 0.10 0.17 7.56 -2.39 -0.02 0.15 16 31 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 32 H 0.07 0.44 8.14 -2.39 -0.02 0.42 16 33 H 0.41 4.04 7.80 -92.70 -0.72 3.32 16 34 H 0.41 0.53 8.84 -92.71 -0.82 -0.29 16 35 H 0.42 2.22 8.93 -92.70 -0.83 1.39 16 36 H 0.42 0.94 7.81 -92.71 -0.72 0.22 16 37 H 0.10 2.24 8.14 -2.39 -0.02 2.22 16 38 H 0.12 2.19 8.08 -2.39 -0.02 2.17 16 39 H 0.14 4.15 8.14 -2.39 -0.02 4.13 16 40 H 0.02 1.41 5.58 -2.39 -0.01 1.39 16 41 H 0.04 2.34 7.16 -2.39 -0.02 2.32 16 42 H 0.25 15.15 8.31 -92.71 -0.77 14.38 16 43 H 0.07 2.60 8.14 -2.39 -0.02 2.58 16 44 H 0.02 0.97 7.41 -2.39 -0.02 0.95 16 45 H 0.11 0.86 7.78 -2.39 -0.02 0.85 16 46 H 0.12 1.04 8.14 -2.39 -0.02 1.02 16 Total: -1.00 -94.07 381.51 -3.66 -97.73 By element: Atomic # 1 Polarization: 10.21 SS G_CDS: -2.03 Total: 8.19 kcal Atomic # 6 Polarization: 33.33 SS G_CDS: 7.56 Total: 40.89 kcal Atomic # 7 Polarization: -132.03 SS G_CDS: -11.07 Total: -143.10 kcal Atomic # 8 Polarization: -52.93 SS G_CDS: -0.16 Total: -53.09 kcal Atomic # 14 Polarization: 47.36 SS G_CDS: 2.03 Total: 49.38 kcal Total: -94.07 -3.66 -97.73 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001108537644.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.423 kcal (2) G-P(sol) polarization free energy of solvation -94.069 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.647 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.661 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -97.730 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.308 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds