Wall clock time and date at job start Tue Mar 31 2020 23:23:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09003 * 109.46713 * 2 1 4 4 N 1.46498 * 109.47423 * 240.00148 * 2 1 3 5 5 C 1.34774 * 120.00211 * 84.99537 * 4 2 1 6 6 N 1.34777 * 120.00311 * 180.02562 * 5 4 2 7 7 O 1.21586 * 120.00048 * 0.02562 * 5 4 2 8 8 C 1.50700 * 109.47221 * 119.99800 * 2 1 3 9 9 O 1.21278 * 119.99986 * 120.00321 * 8 2 1 10 10 N 1.34772 * 120.00173 * 299.99934 * 8 2 1 11 11 C 1.46492 * 120.00452 * 179.97438 * 10 8 2 12 12 H 1.09004 * 115.51447 * 350.42618 * 11 10 8 13 13 C 1.53001 * 117.44938 * 205.00660 * 11 10 8 14 14 H 1.08995 * 119.52330 * 4.08537 * 13 11 10 15 15 C 1.54376 * 118.13123 * 160.68829 * 13 11 10 16 16 N 1.48552 * 104.60003 * 87.22725 * 15 13 11 17 17 C 1.46897 * 111.00171 * 200.96200 * 16 15 13 18 18 C 1.50701 * 109.47095 * 305.41528 * 17 16 15 19 19 O 1.21294 * 119.99904 * 0.02562 * 18 17 16 20 20 N 1.34781 * 120.00194 * 179.97438 * 18 17 16 21 21 C 1.37095 * 119.99929 * 180.02562 * 20 18 17 22 22 H 1.07997 * 120.00057 * 359.97438 * 21 20 18 23 23 C 1.38949 * 119.99761 * 180.02562 * 21 20 18 24 24 N 1.31412 * 119.99677 * 179.97438 * 23 21 20 25 25 Si 1.86794 * 120.00018 * 359.97438 * 23 21 20 26 26 H 1.48500 * 109.47366 * 90.00053 * 25 23 21 27 27 H 1.48508 * 109.46827 * 209.99876 * 25 23 21 28 28 H 1.48502 * 109.47271 * 329.99713 * 25 23 21 29 29 C 1.48564 * 104.22107 * 320.51588 * 16 15 13 30 30 C 1.53007 * 117.44917 * 135.77316 * 11 10 8 31 31 H 1.09001 * 119.52084 * 355.91069 * 30 11 10 32 32 H 1.08994 * 109.47217 * 299.99903 * 1 2 3 33 33 H 1.09003 * 109.47259 * 60.00502 * 1 2 3 34 34 H 1.09003 * 109.46713 * 179.97438 * 1 2 3 35 35 H 0.97004 * 119.99747 * 265.00186 * 4 2 1 36 36 H 0.97001 * 120.00485 * 180.02562 * 6 5 4 37 37 H 0.97005 * 119.99790 * 359.72197 * 6 5 4 38 38 H 0.97006 * 120.00084 * 0.02562 * 10 8 2 39 39 H 1.09004 * 110.41239 * 206.00939 * 15 13 11 40 40 H 1.09006 * 110.40958 * 328.44528 * 15 13 11 41 41 H 1.08999 * 109.47366 * 65.41443 * 17 16 15 42 42 H 1.09000 * 109.47306 * 185.41685 * 17 16 15 43 43 H 0.97000 * 119.99343 * 0.02562 * 20 18 17 44 44 H 0.96999 * 119.99852 * 180.02562 * 24 23 21 45 45 H 1.09004 * 110.41347 * 280.70498 * 29 16 15 46 46 H 1.09004 * 110.41377 * 158.26109 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6906 -1.1961 5 6 2.1471 -0.0182 -2.3571 6 7 2.5959 -0.6537 -3.4577 7 8 1.8582 1.1616 -2.4117 8 6 2.0323 -0.7104 1.2305 9 8 2.7296 -1.6964 1.1192 10 7 1.7068 -0.2499 2.4545 11 6 2.1946 -0.9407 3.6507 12 1 2.6745 -1.9034 3.4741 13 6 1.3809 -0.7839 4.9369 14 1 0.4423 -0.2302 4.9145 15 6 1.5873 -1.8228 6.0599 16 7 2.7267 -1.2949 6.8536 17 6 3.3649 -2.3636 7.6336 18 6 2.3279 -3.0552 8.4806 19 8 1.1709 -2.6936 8.4382 20 7 2.6859 -4.0761 9.2845 21 6 1.7424 -4.7055 10.0546 22 1 0.7124 -4.3830 10.0175 23 6 2.1116 -5.7576 10.8837 24 7 1.2073 -6.3606 11.6223 25 14 3.8933 -6.3148 10.9484 26 1 4.6109 -5.5573 12.0051 27 1 3.9470 -7.7665 11.2570 28 1 4.5385 -6.0639 9.6346 29 6 3.6600 -0.7498 5.8343 30 6 2.7445 -0.0780 4.7885 31 1 2.8210 1.0012 4.6555 32 1 -0.3633 0.5138 0.8899 33 1 -0.3634 0.5138 -0.8900 34 1 -0.3633 -1.0277 -0.0005 35 1 2.2491 -1.6318 -1.1526 36 1 2.6889 -0.1697 -4.2932 37 1 2.8302 -1.5939 -3.4132 38 1 1.1488 0.5386 2.5436 39 1 0.6935 -1.8953 6.6797 40 1 1.8373 -2.7957 5.6366 41 1 3.8208 -3.0855 6.9560 42 1 4.1327 -1.9346 8.2775 43 1 3.6112 -4.3654 9.3180 44 1 1.4650 -7.0948 12.2014 45 1 4.2344 -1.5548 5.3756 46 1 4.3269 -0.0143 6.2841 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001114176566.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:23:45 Heat of formation + Delta-G solvation = -47.468914 kcal Electronic energy + Delta-G solvation = -28682.528140 eV Core-core repulsion = 24415.852699 eV Total energy + Delta-G solvation = -4266.675441 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.98192 -40.23303 -39.35034 -38.16108 -35.46443 -35.27310 -34.17918 -33.98516 -32.81363 -31.70324 -30.46362 -28.32274 -27.78759 -25.39014 -24.46483 -22.61613 -21.54129 -21.13970 -20.61201 -20.36082 -19.39717 -19.10908 -18.24560 -18.07573 -17.09148 -16.78217 -16.03317 -15.95984 -15.46442 -15.30606 -15.12754 -14.94166 -14.78100 -14.66148 -14.04574 -13.77975 -13.66565 -13.30509 -13.19915 -12.96641 -12.82929 -12.56722 -12.40130 -12.13736 -12.07820 -11.91918 -11.45757 -11.37030 -11.11942 -10.96369 -10.77872 -10.61911 -10.34895 -10.15774 -10.12757 -10.00405 -9.59017 -9.58812 -9.08150 -8.55706 -8.23430 -8.11146 -6.34180 -3.85724 2.04991 2.13222 2.70362 2.81457 3.00631 3.05178 3.13476 3.51321 3.68339 3.92450 4.00896 4.07828 4.13177 4.47107 4.51724 4.55759 4.65269 4.68812 4.84488 5.05578 5.08080 5.18622 5.22095 5.27629 5.44921 5.57491 5.57973 5.65832 5.67152 5.74968 5.86615 5.89289 5.97636 5.99979 6.17531 6.24794 6.46171 6.52115 6.97655 7.01368 7.09404 7.48055 7.54631 7.68528 8.11050 8.15844 8.56049 8.91592 9.38726 9.78351 10.78726 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.023956 B = 0.001782 C = 0.001753 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1168.534245 B =15712.958718 C =15971.869389 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.146 3.854 3 H 0.117 0.883 4 N -0.729 5.729 5 C 0.710 3.290 6 N -0.865 5.865 7 O -0.596 6.596 8 C 0.517 3.483 9 O -0.533 6.533 10 N -0.691 5.691 11 C 0.102 3.898 12 H 0.134 0.866 13 C -0.159 4.159 14 H 0.120 0.880 15 C 0.064 3.936 16 N -0.486 5.486 17 C 0.031 3.969 18 C 0.451 3.549 19 O -0.563 6.563 20 N -0.588 5.588 21 C -0.306 4.306 22 H 0.120 0.880 23 C 0.042 3.958 24 N -0.880 5.880 25 Si 0.879 3.121 26 H -0.270 1.270 27 H -0.276 1.276 28 H -0.270 1.270 29 C 0.060 3.940 30 C -0.171 4.171 31 H 0.119 0.881 32 H 0.073 0.927 33 H 0.077 0.923 34 H 0.065 0.935 35 H 0.407 0.593 36 H 0.416 0.584 37 H 0.399 0.601 38 H 0.405 0.595 39 H 0.124 0.876 40 H 0.041 0.959 41 H 0.051 0.949 42 H 0.094 0.906 43 H 0.371 0.629 44 H 0.274 0.726 45 H 0.046 0.954 46 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.009 11.604 -25.795 28.725 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.036 3.964 3 H 0.135 0.865 4 N -0.387 5.387 5 C 0.408 3.592 6 N -0.433 5.433 7 O -0.474 6.474 8 C 0.302 3.698 9 O -0.409 6.409 10 N -0.340 5.340 11 C -0.004 4.004 12 H 0.152 0.848 13 C -0.180 4.180 14 H 0.138 0.862 15 C -0.063 4.063 16 N -0.211 5.211 17 C -0.101 4.101 18 C 0.237 3.763 19 O -0.445 6.445 20 N -0.227 5.227 21 C -0.434 4.434 22 H 0.138 0.862 23 C -0.161 4.161 24 N -0.519 5.519 25 Si 0.706 3.294 26 H -0.196 1.196 27 H -0.202 1.202 28 H -0.195 1.195 29 C -0.068 4.068 30 C -0.191 4.191 31 H 0.137 0.863 32 H 0.092 0.908 33 H 0.096 0.904 34 H 0.084 0.916 35 H 0.244 0.756 36 H 0.248 0.752 37 H 0.227 0.773 38 H 0.241 0.759 39 H 0.142 0.858 40 H 0.059 0.941 41 H 0.069 0.931 42 H 0.112 0.888 43 H 0.204 0.796 44 H 0.084 0.916 45 H 0.064 0.936 46 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 4.220 12.342 -25.214 28.388 hybrid contribution 1.755 -1.516 -0.541 2.381 sum 5.975 10.826 -25.755 28.569 Atomic orbital electron populations 1.22186 0.92577 1.03424 1.03876 1.20565 0.95641 0.97769 0.82403 0.86499 1.44770 1.71480 1.14505 1.07918 1.15844 0.77936 0.84809 0.80565 1.42938 1.73218 1.15167 1.11975 1.90977 1.57450 1.14268 1.84706 1.20586 0.79982 0.84630 0.84588 1.90715 1.37568 1.26146 1.86443 1.45179 1.52792 1.31645 1.04434 1.21851 1.01062 0.97497 0.79993 0.84846 1.24074 0.95973 1.02386 0.95519 0.86186 1.22882 0.97943 0.93491 0.91975 1.65416 1.05969 1.29594 1.20081 1.22138 0.97190 0.93320 0.97458 1.19580 0.89466 0.82996 0.84306 1.90487 1.19752 1.65993 1.68314 1.42191 1.09977 1.30918 1.39569 1.19428 0.93030 1.12771 1.18187 0.86208 1.25041 0.98044 0.96578 0.96439 1.69620 1.33232 1.23128 1.25965 0.86676 0.84674 0.79434 0.78634 1.19550 1.20157 1.19522 1.22682 0.94467 0.98655 0.91003 1.23914 0.97140 0.99203 0.98891 0.86336 0.90767 0.90447 0.91555 0.75626 0.75173 0.77311 0.75944 0.85794 0.94095 0.93061 0.88803 0.79649 0.91574 0.93608 0.89418 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.97 9.38 37.16 0.35 -0.62 16 2 C 0.15 1.08 2.98 -69.08 -0.21 0.88 16 3 H 0.12 0.89 7.58 -51.93 -0.39 0.50 16 4 N -0.73 -5.47 4.96 -59.81 -0.30 -5.77 16 5 C 0.71 6.10 8.80 -86.92 -0.77 5.34 16 6 N -0.87 -3.95 8.88 27.63 0.25 -3.70 16 7 O -0.60 -7.43 16.84 5.29 0.09 -7.34 16 8 C 0.52 4.75 7.22 -10.99 -0.08 4.67 16 9 O -0.53 -6.70 15.40 5.56 0.09 -6.61 16 10 N -0.69 -5.50 5.46 -53.81 -0.29 -5.80 16 11 C 0.10 1.06 5.97 -67.93 -0.41 0.65 16 12 H 0.13 1.65 7.40 -51.93 -0.38 1.26 16 13 C -0.16 -1.84 7.05 -89.24 -0.63 -2.47 16 14 H 0.12 1.23 8.14 -51.93 -0.42 0.80 16 15 C 0.06 1.00 5.11 -2.19 -0.01 0.99 16 16 N -0.49 -7.58 5.34 -231.41 -1.23 -8.82 16 17 C 0.03 0.51 5.55 -4.98 -0.03 0.48 16 18 C 0.45 9.98 7.50 -10.98 -0.08 9.89 16 19 O -0.56 -14.40 13.24 5.55 0.07 -14.33 16 20 N -0.59 -13.76 5.09 -10.96 -0.06 -13.81 16 21 C -0.31 -8.51 10.16 -14.93 -0.15 -8.66 16 22 H 0.12 3.81 7.39 -52.49 -0.39 3.42 16 23 C 0.04 1.14 5.50 -17.47 -0.10 1.05 16 24 N -0.88 -25.43 13.96 55.50 0.77 -24.66 16 25 Si 0.88 19.17 27.74 -169.99 -4.71 14.46 16 26 H -0.27 -5.78 7.11 56.52 0.40 -5.38 16 27 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 28 H -0.27 -5.36 6.52 56.52 0.37 -4.99 16 29 C 0.06 0.71 6.30 -2.18 -0.01 0.70 16 30 C -0.17 -1.78 7.05 -89.23 -0.63 -2.41 16 31 H 0.12 1.05 8.14 -51.93 -0.42 0.63 16 32 H 0.07 0.31 7.56 -51.93 -0.39 -0.08 16 33 H 0.08 0.54 8.14 -51.93 -0.42 0.11 16 34 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 35 H 0.41 2.73 7.80 -40.82 -0.32 2.41 16 36 H 0.42 1.46 8.93 -40.82 -0.36 1.09 16 37 H 0.40 0.80 8.84 -40.82 -0.36 0.44 16 38 H 0.41 2.13 8.24 -40.82 -0.34 1.79 16 39 H 0.12 2.35 6.05 -51.93 -0.31 2.04 16 40 H 0.04 0.66 8.00 -51.93 -0.42 0.24 16 41 H 0.05 0.76 7.88 -51.93 -0.41 0.35 16 42 H 0.09 1.36 8.14 -51.93 -0.42 0.94 16 43 H 0.37 7.64 5.76 -40.82 -0.24 7.41 16 44 H 0.27 7.31 8.31 -40.82 -0.34 6.97 16 45 H 0.05 0.53 7.82 -51.93 -0.41 0.12 16 46 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 LS Contribution 382.62 15.07 5.77 5.77 Total: -1.00 -36.47 382.62 -8.73 -45.20 By element: Atomic # 1 Polarization: 21.35 SS G_CDS: -6.42 Total: 14.92 kcal Atomic # 6 Polarization: 13.25 SS G_CDS: -2.75 Total: 10.50 kcal Atomic # 7 Polarization: -61.70 SS G_CDS: -0.86 Total: -62.56 kcal Atomic # 8 Polarization: -28.53 SS G_CDS: 0.25 Total: -28.28 kcal Atomic # 14 Polarization: 19.17 SS G_CDS: -4.71 Total: 14.46 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -36.47 -8.73 -45.20 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001114176566.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.270 kcal (2) G-P(sol) polarization free energy of solvation -36.466 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.736 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.733 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.198 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.469 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds