Wall clock time and date at job start Tue Mar 31 2020 23:23:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09003 * 109.46713 * 2 1 4 4 N 1.46498 * 109.47423 * 240.00148 * 2 1 3 5 5 C 1.34774 * 120.00211 * 84.99537 * 4 2 1 6 6 N 1.34777 * 120.00311 * 180.02562 * 5 4 2 7 7 O 1.21586 * 120.00048 * 0.02562 * 5 4 2 8 8 C 1.50700 * 109.47221 * 119.99800 * 2 1 3 9 9 O 1.21278 * 119.99986 * 120.00321 * 8 2 1 10 10 N 1.34772 * 120.00173 * 299.99934 * 8 2 1 11 11 C 1.46492 * 120.00452 * 179.97438 * 10 8 2 12 12 H 1.09004 * 115.51447 * 350.42618 * 11 10 8 13 13 C 1.53001 * 117.44938 * 205.00660 * 11 10 8 14 14 H 1.08995 * 119.52330 * 4.08537 * 13 11 10 15 15 C 1.54376 * 118.13123 * 160.68829 * 13 11 10 16 16 N 1.48552 * 104.60003 * 87.22725 * 15 13 11 17 17 C 1.46897 * 111.00171 * 200.96200 * 16 15 13 18 18 C 1.50701 * 109.47095 * 305.41528 * 17 16 15 19 19 O 1.21294 * 119.99904 * 0.02562 * 18 17 16 20 20 N 1.34781 * 120.00194 * 179.97438 * 18 17 16 21 21 C 1.37095 * 119.99929 * 180.02562 * 20 18 17 22 22 H 1.07997 * 120.00057 * 359.97438 * 21 20 18 23 23 C 1.38949 * 119.99761 * 180.02562 * 21 20 18 24 24 N 1.31412 * 119.99677 * 179.97438 * 23 21 20 25 25 Si 1.86794 * 120.00018 * 359.97438 * 23 21 20 26 26 H 1.48500 * 109.47366 * 90.00053 * 25 23 21 27 27 H 1.48508 * 109.46827 * 209.99876 * 25 23 21 28 28 H 1.48502 * 109.47271 * 329.99713 * 25 23 21 29 29 C 1.48564 * 104.22107 * 320.51588 * 16 15 13 30 30 C 1.53007 * 117.44917 * 135.77316 * 11 10 8 31 31 H 1.09001 * 119.52084 * 355.91069 * 30 11 10 32 32 H 1.08994 * 109.47217 * 299.99903 * 1 2 3 33 33 H 1.09003 * 109.47259 * 60.00502 * 1 2 3 34 34 H 1.09003 * 109.46713 * 179.97438 * 1 2 3 35 35 H 0.97004 * 119.99747 * 265.00186 * 4 2 1 36 36 H 0.97001 * 120.00485 * 180.02562 * 6 5 4 37 37 H 0.97005 * 119.99790 * 359.72197 * 6 5 4 38 38 H 0.97006 * 120.00084 * 0.02562 * 10 8 2 39 39 H 1.09004 * 110.41239 * 206.00939 * 15 13 11 40 40 H 1.09006 * 110.40958 * 328.44528 * 15 13 11 41 41 H 1.08999 * 109.47366 * 65.41443 * 17 16 15 42 42 H 1.09000 * 109.47306 * 185.41685 * 17 16 15 43 43 H 0.97000 * 119.99343 * 0.02562 * 20 18 17 44 44 H 0.96999 * 119.99852 * 180.02562 * 24 23 21 45 45 H 1.09004 * 110.41347 * 280.70498 * 29 16 15 46 46 H 1.09004 * 110.41377 * 158.26109 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6906 -1.1961 5 6 2.1471 -0.0182 -2.3571 6 7 2.5959 -0.6537 -3.4577 7 8 1.8582 1.1616 -2.4117 8 6 2.0323 -0.7104 1.2305 9 8 2.7296 -1.6964 1.1192 10 7 1.7068 -0.2499 2.4545 11 6 2.1946 -0.9407 3.6507 12 1 2.6745 -1.9034 3.4741 13 6 1.3809 -0.7839 4.9369 14 1 0.4423 -0.2302 4.9145 15 6 1.5873 -1.8228 6.0599 16 7 2.7267 -1.2949 6.8536 17 6 3.3649 -2.3636 7.6336 18 6 2.3279 -3.0552 8.4806 19 8 1.1709 -2.6936 8.4382 20 7 2.6859 -4.0761 9.2845 21 6 1.7424 -4.7055 10.0546 22 1 0.7124 -4.3830 10.0175 23 6 2.1116 -5.7576 10.8837 24 7 1.2073 -6.3606 11.6223 25 14 3.8933 -6.3148 10.9484 26 1 4.6109 -5.5573 12.0051 27 1 3.9470 -7.7665 11.2570 28 1 4.5385 -6.0639 9.6346 29 6 3.6600 -0.7498 5.8343 30 6 2.7445 -0.0780 4.7885 31 1 2.8210 1.0012 4.6555 32 1 -0.3633 0.5138 0.8899 33 1 -0.3634 0.5138 -0.8900 34 1 -0.3633 -1.0277 -0.0005 35 1 2.2491 -1.6318 -1.1526 36 1 2.6889 -0.1697 -4.2932 37 1 2.8302 -1.5939 -3.4132 38 1 1.1488 0.5386 2.5436 39 1 0.6935 -1.8953 6.6797 40 1 1.8373 -2.7957 5.6366 41 1 3.8208 -3.0855 6.9560 42 1 4.1327 -1.9346 8.2775 43 1 3.6112 -4.3654 9.3180 44 1 1.4650 -7.0948 12.2014 45 1 4.2344 -1.5548 5.3756 46 1 4.3269 -0.0143 6.2841 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001114176566.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:23:44 Heat of formation + Delta-G solvation = -82.195264 kcal Electronic energy + Delta-G solvation = -28684.033987 eV Core-core repulsion = 24415.852699 eV Total energy + Delta-G solvation = -4268.181289 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.77047 -41.16492 -40.34211 -39.66096 -36.50381 -36.04518 -35.82582 -34.75222 -33.87621 -33.64192 -31.07667 -29.38066 -29.16598 -26.59209 -25.70115 -23.69196 -22.30056 -22.04793 -21.41107 -21.33073 -21.19659 -20.11361 -19.72481 -18.70048 -17.90000 -17.61884 -17.48151 -16.83698 -16.66313 -16.44563 -16.31185 -15.97060 -15.79357 -15.48709 -15.26851 -14.95371 -14.88305 -14.64624 -14.40759 -14.11884 -13.94086 -13.67950 -13.37839 -13.28900 -13.17876 -12.97533 -12.70725 -12.52483 -12.41397 -12.39012 -11.99949 -11.93345 -11.53626 -11.49576 -11.15155 -11.03276 -10.73292 -10.30784 -10.24658 -10.16007 -9.85637 -9.39771 -8.41861 -6.02533 1.29771 1.31463 1.34919 1.43626 1.48159 1.93005 2.07486 2.15977 2.22284 2.57903 2.74546 3.13424 3.18498 3.38618 3.59605 3.62292 3.68828 3.84223 4.00399 4.05770 4.10085 4.20331 4.26942 4.35286 4.48879 4.56045 4.59887 4.65197 4.76358 4.79830 4.98124 5.12556 5.18561 5.23612 5.30722 5.37857 5.52247 5.80081 5.80710 5.88328 6.02072 6.02123 6.33141 6.58374 6.87580 6.96685 7.02021 7.38146 7.59347 7.94769 8.75558 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.023956 B = 0.001782 C = 0.001753 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1168.534245 B =15712.958718 C =15971.869389 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.150 3.850 3 H 0.119 0.881 4 N -0.726 5.726 5 C 0.706 3.294 6 N -0.847 5.847 7 O -0.637 6.637 8 C 0.520 3.480 9 O -0.568 6.568 10 N -0.677 5.677 11 C 0.113 3.887 12 H 0.116 0.884 13 C -0.165 4.165 14 H 0.133 0.867 15 C 0.064 3.936 16 N -0.505 5.505 17 C 0.041 3.959 18 C 0.449 3.551 19 O -0.604 6.604 20 N -0.590 5.590 21 C -0.327 4.327 22 H 0.057 0.943 23 C -0.014 4.014 24 N -0.933 5.933 25 Si 0.963 3.037 26 H -0.256 1.256 27 H -0.276 1.276 28 H -0.233 1.233 29 C 0.059 3.941 30 C -0.154 4.154 31 H 0.144 0.856 32 H 0.094 0.906 33 H 0.069 0.931 34 H 0.063 0.937 35 H 0.412 0.588 36 H 0.423 0.577 37 H 0.413 0.587 38 H 0.421 0.579 39 H 0.080 0.920 40 H 0.028 0.972 41 H 0.077 0.923 42 H 0.125 0.875 43 H 0.389 0.611 44 H 0.279 0.721 45 H 0.054 0.946 46 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.216 12.631 -27.518 31.374 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.040 3.960 3 H 0.137 0.863 4 N -0.384 5.384 5 C 0.403 3.597 6 N -0.416 5.416 7 O -0.519 6.519 8 C 0.307 3.693 9 O -0.446 6.446 10 N -0.328 5.328 11 C 0.006 3.994 12 H 0.133 0.867 13 C -0.185 4.185 14 H 0.151 0.849 15 C -0.064 4.064 16 N -0.229 5.229 17 C -0.090 4.090 18 C 0.237 3.763 19 O -0.488 6.488 20 N -0.232 5.232 21 C -0.456 4.456 22 H 0.075 0.925 23 C -0.213 4.213 24 N -0.574 5.574 25 Si 0.783 3.217 26 H -0.181 1.181 27 H -0.201 1.201 28 H -0.156 1.156 29 C -0.069 4.069 30 C -0.174 4.174 31 H 0.162 0.838 32 H 0.113 0.887 33 H 0.088 0.912 34 H 0.082 0.918 35 H 0.249 0.751 36 H 0.256 0.744 37 H 0.244 0.756 38 H 0.259 0.741 39 H 0.099 0.901 40 H 0.046 0.954 41 H 0.095 0.905 42 H 0.143 0.857 43 H 0.225 0.775 44 H 0.088 0.912 45 H 0.072 0.928 46 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 7.434 13.379 -26.973 31.013 hybrid contribution 0.623 -1.801 -0.044 1.906 sum 8.057 11.578 -27.018 30.479 Atomic orbital electron populations 1.22156 0.91354 1.03454 1.04517 1.20579 0.96441 0.97418 0.81524 0.86327 1.44755 1.71232 1.14634 1.07762 1.16035 0.77901 0.84405 0.81328 1.42792 1.71780 1.15859 1.11185 1.90946 1.59418 1.16119 1.85426 1.20851 0.79255 0.84053 0.85139 1.90705 1.39223 1.27752 1.86919 1.45031 1.52562 1.31779 1.03399 1.21565 1.00283 0.97233 0.80348 0.86660 1.23874 0.97502 1.01862 0.95270 0.84890 1.22628 0.96575 0.94470 0.92704 1.65408 1.06916 1.29147 1.21468 1.22092 0.95429 0.93981 0.97513 1.20798 0.90207 0.81913 0.83387 1.90497 1.22296 1.66838 1.69204 1.42022 1.09999 1.31444 1.39706 1.19000 0.91698 1.14425 1.20519 0.92487 1.26093 1.04365 0.95814 0.95028 1.69801 1.36582 1.23969 1.27025 0.85385 0.76960 0.78610 0.80703 1.18079 1.20066 1.15623 1.22794 0.94198 0.99312 0.90556 1.24020 0.95270 1.00314 0.97827 0.83840 0.88708 0.91243 0.91783 0.75117 0.74394 0.75634 0.74052 0.90132 0.95366 0.90493 0.85749 0.77539 0.91154 0.92799 0.87333 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.62 9.38 71.98 0.68 -0.95 16 2 C 0.15 2.00 2.98 44.24 0.13 2.13 16 3 H 0.12 1.61 7.58 -2.39 -0.02 1.59 16 4 N -0.73 -10.05 4.96 -461.42 -2.29 -12.34 16 5 C 0.71 11.38 8.80 179.05 1.58 12.95 16 6 N -0.85 -6.52 8.88 -184.75 -1.64 -8.16 16 7 O -0.64 -15.49 16.84 -3.99 -0.07 -15.56 16 8 C 0.52 8.69 7.22 87.66 0.63 9.32 16 9 O -0.57 -13.59 15.40 -3.02 -0.05 -13.64 16 10 N -0.68 -9.19 5.46 -442.54 -2.41 -11.61 16 11 C 0.11 2.11 5.97 45.00 0.27 2.38 16 12 H 0.12 2.69 7.40 -2.39 -0.02 2.67 16 13 C -0.16 -3.58 7.05 -9.90 -0.07 -3.65 16 14 H 0.13 2.52 8.14 -2.39 -0.02 2.50 16 15 C 0.06 2.02 5.11 86.45 0.44 2.46 16 16 N -0.50 -14.93 5.34 -886.05 -4.73 -19.66 16 17 C 0.04 1.27 5.55 85.56 0.47 1.74 16 18 C 0.45 20.08 7.50 87.66 0.66 20.74 16 19 O -0.60 -32.55 13.24 -3.07 -0.04 -32.59 16 20 N -0.59 -27.68 5.09 -306.98 -1.56 -29.25 16 21 C -0.33 -19.07 10.16 84.04 0.85 -18.21 16 22 H 0.06 3.95 7.39 -2.91 -0.02 3.93 16 23 C -0.01 -0.79 5.50 84.93 0.47 -0.32 16 24 N -0.93 -56.09 13.96 21.66 0.30 -55.79 16 25 Si 0.96 38.68 27.74 68.60 1.90 40.58 16 26 H -0.26 -9.75 7.11 99.48 0.71 -9.04 16 27 H -0.28 -11.01 7.11 99.48 0.71 -10.30 16 28 H -0.23 -7.89 6.52 99.48 0.65 -7.24 16 29 C 0.06 1.20 6.30 86.45 0.54 1.74 16 30 C -0.15 -2.72 7.05 -9.89 -0.07 -2.79 16 31 H 0.14 1.89 8.14 -2.39 -0.02 1.87 16 32 H 0.09 0.57 7.56 -2.39 -0.02 0.55 16 33 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 34 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 35 H 0.41 5.04 7.80 -92.71 -0.72 4.32 16 36 H 0.42 2.37 8.93 -92.71 -0.83 1.54 16 37 H 0.41 0.93 8.84 -92.70 -0.82 0.11 16 38 H 0.42 3.15 8.24 -92.70 -0.76 2.38 16 39 H 0.08 3.25 6.05 -2.38 -0.01 3.24 16 40 H 0.03 0.93 8.00 -2.38 -0.02 0.91 16 41 H 0.08 2.02 7.88 -2.39 -0.02 2.00 16 42 H 0.12 3.12 8.14 -2.39 -0.02 3.10 16 43 H 0.39 15.14 5.76 -92.71 -0.53 14.61 16 44 H 0.28 15.33 8.31 -92.71 -0.77 14.56 16 45 H 0.05 1.05 7.82 -2.38 -0.02 1.03 16 46 H 0.11 1.82 8.14 -2.38 -0.02 1.80 16 Total: -1.00 -86.18 382.62 -6.64 -92.82 By element: Atomic # 1 Polarization: 40.31 SS G_CDS: -2.64 Total: 37.67 kcal Atomic # 6 Polarization: 20.95 SS G_CDS: 6.58 Total: 27.54 kcal Atomic # 7 Polarization: -124.48 SS G_CDS: -12.33 Total: -136.81 kcal Atomic # 8 Polarization: -61.64 SS G_CDS: -0.15 Total: -61.80 kcal Atomic # 14 Polarization: 38.68 SS G_CDS: 1.90 Total: 40.58 kcal Total: -86.18 -6.64 -92.82 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001114176566.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.624 kcal (2) G-P(sol) polarization free energy of solvation -86.183 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.559 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.636 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.819 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.195 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds