Wall clock time and date at job start Tue Mar 31 2020 23:04:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08993 * 109.47369 * 2 1 4 4 C 1.50700 * 109.46989 * 120.00533 * 2 1 3 5 5 H 1.08001 * 120.00510 * 119.99721 * 4 2 1 6 6 C 1.37881 * 119.99827 * 299.99112 * 4 2 1 7 7 N 1.31518 * 119.99765 * 0.02562 * 6 4 2 8 8 Si 1.86802 * 120.00023 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.46934 * 60.00520 * 8 6 4 10 10 H 1.48498 * 109.47062 * 180.02562 * 8 6 4 11 11 H 1.48494 * 109.47147 * 300.00636 * 8 6 4 12 12 N 1.46504 * 109.46925 * 239.99807 * 2 1 3 13 13 C 1.46496 * 120.00085 * 300.00640 * 12 2 1 14 14 C 1.34780 * 119.99801 * 119.99925 * 12 2 1 15 15 O 1.21528 * 119.99807 * 353.59016 * 14 12 2 16 16 C 1.47956 * 120.00111 * 173.58401 * 14 12 2 17 17 C 1.35695 * 119.49870 * 157.59289 * 16 14 12 18 18 C 1.47148 * 118.42088 * 180.24959 * 17 16 14 19 19 N 1.31990 * 121.16864 * 179.74213 * 18 17 16 20 20 C 1.46500 * 120.00168 * 184.99685 * 19 18 17 21 21 C 1.50694 * 109.47113 * 116.26190 * 20 19 18 22 22 C 1.38235 * 120.00497 * 269.72772 * 21 20 19 23 23 C 1.38227 * 120.00362 * 179.77050 * 22 21 20 24 24 C 1.38240 * 119.99697 * 0.50573 * 23 22 21 25 25 C 1.38237 * 120.00024 * 359.74584 * 24 23 22 26 26 C 1.38230 * 120.00007 * 0.02562 * 25 24 23 27 27 C 1.46795 * 117.65946 * 359.46329 * 18 17 16 28 28 C 1.34777 * 118.76997 * 0.25329 * 27 18 17 29 29 N 1.35752 * 121.45634 * 0.02562 * 28 27 18 30 30 H 0.97003 * 118.65527 * 179.97438 * 29 28 27 31 31 H 1.08993 * 109.47369 * 180.02562 * 1 2 3 32 32 H 1.09005 * 109.46888 * 300.00199 * 1 2 3 33 33 H 1.09004 * 109.47174 * 59.99758 * 1 2 3 34 34 H 0.96999 * 119.99426 * 179.97438 * 7 6 4 35 35 H 1.09002 * 109.46999 * 274.68761 * 13 12 2 36 36 H 1.09000 * 109.47377 * 34.69358 * 13 12 2 37 37 H 1.09007 * 109.47074 * 154.69165 * 13 12 2 38 38 H 1.07997 * 120.78957 * 359.97438 * 17 16 14 39 39 H 1.08995 * 109.47124 * 236.26818 * 20 19 18 40 40 H 1.09001 * 109.46680 * 356.26077 * 20 19 18 41 41 H 1.07998 * 119.99749 * 359.97438 * 22 21 20 42 42 H 1.08001 * 120.00560 * 180.22981 * 23 22 21 43 43 H 1.08005 * 119.99760 * 179.72897 * 24 23 22 44 44 H 1.08001 * 119.99560 * 179.97438 * 25 24 23 45 45 H 1.07999 * 119.99751 * 179.97438 * 26 25 24 46 46 H 1.08001 * 120.61522 * 180.27684 * 27 18 17 47 47 H 1.07999 * 119.27101 * 180.02562 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 1.2304 5 1 2.6532 -1.5887 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 0.9429 0.8297 2.6034 8 14 2.3213 -1.1206 4.0079 9 1 3.8063 -1.1212 4.0081 10 1 1.8261 -0.4208 5.2204 11 1 1.8257 -2.5203 4.0076 12 7 2.0183 -0.6907 -1.1962 13 6 1.6643 -2.0932 -1.4281 14 6 2.7931 -0.0357 -2.0834 15 8 2.9911 1.1563 -1.9535 16 6 3.4028 -0.7678 -3.2154 17 6 3.7806 -0.0861 -4.3262 18 6 4.3793 -0.8387 -5.4399 19 7 4.7614 -0.2311 -6.5476 20 6 5.2527 -1.0170 -7.6821 21 6 4.3228 -0.8418 -8.8549 22 6 3.2550 -1.7031 -9.0251 23 6 2.3992 -1.5394 -10.0982 24 6 2.6173 -0.5208 -11.0070 25 6 3.6881 0.3373 -10.8397 26 6 4.5411 0.1765 -9.7639 27 6 4.5423 -2.2880 -5.2733 28 6 4.1357 -2.8584 -4.1219 29 7 3.5830 -2.1230 -3.1236 30 1 3.3042 -2.5755 -2.3121 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3633 0.5139 0.8900 33 1 -0.3634 0.5139 -0.8900 34 1 0.7084 1.1608 3.4844 35 1 2.3687 -2.7375 -0.9019 36 1 0.6558 -2.2792 -1.0586 37 1 1.7050 -2.3064 -2.4963 38 1 3.6410 0.9827 -4.3930 39 1 6.2509 -0.6754 -7.9557 40 1 5.2927 -2.0703 -7.4042 41 1 3.0875 -2.5019 -8.3178 42 1 1.5628 -2.2101 -10.2292 43 1 1.9511 -0.3957 -11.8479 44 1 3.8586 1.1328 -11.5500 45 1 5.3779 0.8467 -9.6335 46 1 4.9804 -2.8861 -6.0587 47 1 4.2522 -3.9240 -3.9905 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001121188761.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:04:28 Heat of formation + Delta-G solvation = 71.894273 kcal Electronic energy + Delta-G solvation = -28164.750161 eV Core-core repulsion = 24314.099959 eV Total energy + Delta-G solvation = -3850.650202 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.73244 -39.33913 -38.46925 -36.07771 -35.59078 -33.14318 -32.27174 -31.66717 -30.97410 -29.90746 -29.20957 -26.88550 -26.01759 -25.35532 -23.94081 -22.69376 -22.42168 -21.59964 -20.51470 -19.65613 -17.85014 -17.12749 -17.01640 -16.59179 -16.09811 -15.69868 -15.53827 -15.32694 -15.01556 -14.76762 -14.64749 -14.29804 -13.84902 -13.54257 -13.41327 -13.32965 -13.12243 -12.75329 -12.72535 -12.45576 -12.33438 -12.01626 -11.69104 -11.66311 -11.37206 -11.19681 -11.08351 -10.94782 -10.86089 -10.57615 -10.42032 -10.30436 -9.64454 -9.47332 -9.33936 -9.21605 -9.00298 -8.60865 -8.56462 -7.92229 -7.18542 -6.20279 -4.30146 1.07321 1.27860 1.32124 1.49041 2.88856 3.18489 3.22182 3.25382 3.25417 3.46250 3.69679 3.83465 4.26979 4.45871 4.52911 4.70406 4.81445 4.86743 4.90142 5.03667 5.07251 5.10279 5.17337 5.22124 5.37460 5.42908 5.55613 5.56993 5.64186 5.69883 5.91391 5.92332 5.96052 6.00553 6.29116 6.36439 6.40597 6.46614 6.59511 6.60265 6.66343 6.86930 6.91438 6.96080 7.09798 7.19904 7.31265 7.54790 7.84322 7.99604 8.14716 8.22487 8.54504 8.75060 9.36739 10.84871 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.023435 B = 0.002139 C = 0.002097 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1194.494073 B =13088.928653 C =13348.844513 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.259 3.741 3 H 0.067 0.933 4 C -0.533 4.533 5 H 0.059 0.941 6 C 0.067 3.933 7 N -0.884 5.884 8 Si 0.901 3.099 9 H -0.276 1.276 10 H -0.285 1.285 11 H -0.277 1.277 12 N -0.586 5.586 13 C 0.059 3.941 14 C 0.547 3.453 15 O -0.520 6.520 16 C 0.105 3.895 17 C -0.119 4.119 18 C 0.244 3.756 19 N -0.565 5.565 20 C 0.080 3.920 21 C -0.067 4.067 22 C -0.113 4.113 23 C -0.122 4.122 24 C -0.127 4.127 25 C -0.122 4.122 26 C -0.103 4.103 27 C -0.286 4.286 28 C 0.142 3.858 29 N -0.613 5.613 30 H 0.421 0.579 31 H 0.031 0.969 32 H 0.096 0.904 33 H 0.015 0.985 34 H 0.266 0.734 35 H 0.057 0.943 36 H 0.086 0.914 37 H 0.067 0.933 38 H 0.156 0.844 39 H 0.078 0.922 40 H 0.052 0.948 41 H 0.117 0.883 42 H 0.119 0.881 43 H 0.118 0.882 44 H 0.120 0.880 45 H 0.121 0.879 46 H 0.140 0.860 47 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.654 -10.754 -19.454 22.527 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.159 3.841 3 H 0.085 0.915 4 C -0.571 4.571 5 H 0.077 0.923 6 C -0.137 4.137 7 N -0.521 5.521 8 Si 0.728 3.272 9 H -0.202 1.202 10 H -0.211 1.211 11 H -0.202 1.202 12 N -0.318 5.318 13 C -0.085 4.085 14 C 0.331 3.669 15 O -0.396 6.396 16 C -0.005 4.005 17 C -0.146 4.146 18 C 0.067 3.933 19 N -0.281 5.281 20 C -0.050 4.050 21 C -0.068 4.068 22 C -0.132 4.132 23 C -0.140 4.140 24 C -0.145 4.145 25 C -0.140 4.140 26 C -0.122 4.122 27 C -0.315 4.315 28 C 0.013 3.987 29 N -0.231 5.231 30 H 0.265 0.735 31 H 0.050 0.950 32 H 0.115 0.885 33 H 0.034 0.966 34 H 0.076 0.924 35 H 0.075 0.925 36 H 0.104 0.896 37 H 0.085 0.915 38 H 0.173 0.827 39 H 0.097 0.903 40 H 0.070 0.930 41 H 0.135 0.865 42 H 0.137 0.863 43 H 0.136 0.864 44 H 0.138 0.862 45 H 0.139 0.861 46 H 0.158 0.842 47 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 3.789 -9.073 -19.700 22.017 hybrid contribution 0.287 -1.746 1.212 2.145 sum 4.076 -10.819 -18.487 21.804 Atomic orbital electron populations 1.22105 0.97844 0.99506 1.01252 1.19074 0.91263 0.94566 0.79153 0.91501 1.21197 1.32509 1.13265 0.90135 0.92326 1.24895 0.94804 0.94939 0.99026 1.69861 1.35767 1.22336 1.24150 0.86517 0.79238 0.79509 0.81894 1.20197 1.21068 1.20215 1.48299 1.48450 1.11565 1.23450 1.22032 1.02986 0.83567 0.99881 1.17978 0.80275 0.87066 0.81569 1.90808 1.61372 1.13786 1.73591 1.20256 1.00463 0.83055 0.96681 1.21789 1.01795 1.00592 0.90434 1.21445 0.90361 0.89093 0.92406 1.73222 1.20958 1.33851 1.00038 1.21048 0.96704 0.97080 0.90128 1.19857 0.96287 0.95319 0.95317 1.21027 0.94811 0.99542 0.97796 1.21096 0.99281 0.98476 0.95113 1.21114 0.98037 0.95893 0.99479 1.21137 0.95422 0.99344 0.98130 1.21048 0.99725 0.97210 0.94197 1.22388 1.13598 0.96040 0.99502 1.21489 0.92292 0.96657 0.88266 1.42277 1.55777 1.06112 1.18918 0.73496 0.95014 0.88538 0.96640 0.92402 0.92495 0.89573 0.91466 0.82689 0.90349 0.92991 0.86528 0.86304 0.86373 0.86237 0.86081 0.84215 0.82450 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.32 8.94 37.16 0.33 -2.99 16 2 C 0.26 6.13 2.63 -69.08 -0.18 5.95 16 3 H 0.07 1.86 6.92 -51.93 -0.36 1.50 16 4 C -0.53 -13.32 8.37 -34.44 -0.29 -13.60 16 5 H 0.06 1.41 7.51 -52.49 -0.39 1.01 16 6 C 0.07 1.72 5.30 -17.82 -0.09 1.62 16 7 N -0.88 -23.82 11.32 55.43 0.63 -23.20 16 8 Si 0.90 19.91 29.54 -169.99 -5.02 14.89 16 9 H -0.28 -6.15 7.11 56.52 0.40 -5.74 16 10 H -0.29 -6.33 7.11 56.52 0.40 -5.93 16 11 H -0.28 -5.94 7.11 56.52 0.40 -5.54 16 12 N -0.59 -11.25 2.75 -176.34 -0.49 -11.73 16 13 C 0.06 0.82 8.00 59.84 0.48 1.30 16 14 C 0.55 10.67 7.54 -12.28 -0.09 10.58 16 15 O -0.52 -12.24 15.82 5.34 0.08 -12.16 16 16 C 0.10 1.62 6.19 -82.48 -0.51 1.11 16 17 C -0.12 -1.91 9.78 -36.88 -0.36 -2.27 16 18 C 0.24 3.57 6.98 -80.73 -0.56 3.01 16 19 N -0.56 -8.70 10.62 -56.94 -0.60 -9.31 16 20 C 0.08 0.99 6.40 -5.20 -0.03 0.96 16 21 C -0.07 -0.82 5.46 -104.63 -0.57 -1.40 16 22 C -0.11 -1.29 9.70 -39.59 -0.38 -1.67 16 23 C -0.12 -1.24 10.05 -39.58 -0.40 -1.64 16 24 C -0.13 -1.25 10.05 -39.58 -0.40 -1.64 16 25 C -0.12 -1.25 10.05 -39.58 -0.40 -1.65 16 26 C -0.10 -1.19 9.70 -39.58 -0.38 -1.57 16 27 C -0.29 -3.14 9.44 -37.35 -0.35 -3.49 16 28 C 0.14 1.28 11.12 -17.04 -0.19 1.09 16 29 N -0.61 -6.95 3.94 -9.76 -0.04 -6.99 16 30 H 0.42 4.20 4.67 -40.82 -0.19 4.01 16 31 H 0.03 0.64 6.69 -51.93 -0.35 0.29 16 32 H 0.10 2.39 6.07 -51.93 -0.32 2.08 16 33 H 0.01 0.31 8.14 -51.93 -0.42 -0.11 16 34 H 0.27 6.86 8.31 -40.82 -0.34 6.52 16 35 H 0.06 0.69 7.10 -51.93 -0.37 0.32 16 36 H 0.09 1.21 6.45 -51.93 -0.33 0.88 16 37 H 0.07 0.74 5.55 -51.92 -0.29 0.45 16 38 H 0.16 2.68 7.74 -52.49 -0.41 2.28 16 39 H 0.08 0.92 8.08 -51.93 -0.42 0.50 16 40 H 0.05 0.56 5.19 -51.93 -0.27 0.29 16 41 H 0.12 1.19 8.06 -52.49 -0.42 0.77 16 42 H 0.12 0.96 8.06 -52.49 -0.42 0.53 16 43 H 0.12 0.88 8.06 -52.48 -0.42 0.46 16 44 H 0.12 0.95 8.06 -52.49 -0.42 0.53 16 45 H 0.12 1.27 8.06 -52.49 -0.42 0.85 16 46 H 0.14 1.27 5.93 -52.49 -0.31 0.96 16 47 H 0.16 0.72 8.06 -52.49 -0.42 0.30 16 LS Contribution 383.73 15.07 5.78 5.78 Total: -1.00 -31.65 383.73 -10.14 -41.80 By element: Atomic # 1 Polarization: 13.33 SS G_CDS: -6.10 Total: 7.23 kcal Atomic # 6 Polarization: -1.93 SS G_CDS: -4.39 Total: -6.32 kcal Atomic # 7 Polarization: -50.72 SS G_CDS: -0.50 Total: -51.22 kcal Atomic # 8 Polarization: -12.24 SS G_CDS: 0.08 Total: -12.16 kcal Atomic # 14 Polarization: 19.91 SS G_CDS: -5.02 Total: 14.89 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -31.65 -10.14 -41.80 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001121188761.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.692 kcal (2) G-P(sol) polarization free energy of solvation -31.653 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.039 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.144 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.798 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.894 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds