Wall clock time and date at job start Tue Mar 31 2020 23:04:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08993 * 109.47369 * 2 1 4 4 C 1.50700 * 109.46989 * 120.00533 * 2 1 3 5 5 H 1.08001 * 120.00510 * 119.99721 * 4 2 1 6 6 C 1.37881 * 119.99827 * 299.99112 * 4 2 1 7 7 N 1.31518 * 119.99765 * 0.02562 * 6 4 2 8 8 Si 1.86802 * 120.00023 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.46934 * 60.00520 * 8 6 4 10 10 H 1.48498 * 109.47062 * 180.02562 * 8 6 4 11 11 H 1.48494 * 109.47147 * 300.00636 * 8 6 4 12 12 N 1.46504 * 109.46925 * 239.99807 * 2 1 3 13 13 C 1.46496 * 120.00085 * 300.00640 * 12 2 1 14 14 C 1.34780 * 119.99801 * 119.99925 * 12 2 1 15 15 O 1.21528 * 119.99807 * 353.59016 * 14 12 2 16 16 C 1.47956 * 120.00111 * 173.58401 * 14 12 2 17 17 C 1.35695 * 119.49870 * 157.59289 * 16 14 12 18 18 C 1.47148 * 118.42088 * 180.24959 * 17 16 14 19 19 N 1.31990 * 121.16864 * 179.74213 * 18 17 16 20 20 C 1.46500 * 120.00168 * 184.99685 * 19 18 17 21 21 C 1.50694 * 109.47113 * 116.26190 * 20 19 18 22 22 C 1.38235 * 120.00497 * 269.72772 * 21 20 19 23 23 C 1.38227 * 120.00362 * 179.77050 * 22 21 20 24 24 C 1.38240 * 119.99697 * 0.50573 * 23 22 21 25 25 C 1.38237 * 120.00024 * 359.74584 * 24 23 22 26 26 C 1.38230 * 120.00007 * 0.02562 * 25 24 23 27 27 C 1.46795 * 117.65946 * 359.46329 * 18 17 16 28 28 C 1.34777 * 118.76997 * 0.25329 * 27 18 17 29 29 N 1.35752 * 121.45634 * 0.02562 * 28 27 18 30 30 H 0.97003 * 118.65527 * 179.97438 * 29 28 27 31 31 H 1.08993 * 109.47369 * 180.02562 * 1 2 3 32 32 H 1.09005 * 109.46888 * 300.00199 * 1 2 3 33 33 H 1.09004 * 109.47174 * 59.99758 * 1 2 3 34 34 H 0.96999 * 119.99426 * 179.97438 * 7 6 4 35 35 H 1.09002 * 109.46999 * 274.68761 * 13 12 2 36 36 H 1.09000 * 109.47377 * 34.69358 * 13 12 2 37 37 H 1.09007 * 109.47074 * 154.69165 * 13 12 2 38 38 H 1.07997 * 120.78957 * 359.97438 * 17 16 14 39 39 H 1.08995 * 109.47124 * 236.26818 * 20 19 18 40 40 H 1.09001 * 109.46680 * 356.26077 * 20 19 18 41 41 H 1.07998 * 119.99749 * 359.97438 * 22 21 20 42 42 H 1.08001 * 120.00560 * 180.22981 * 23 22 21 43 43 H 1.08005 * 119.99760 * 179.72897 * 24 23 22 44 44 H 1.08001 * 119.99560 * 179.97438 * 25 24 23 45 45 H 1.07999 * 119.99751 * 179.97438 * 26 25 24 46 46 H 1.08001 * 120.61522 * 180.27684 * 27 18 17 47 47 H 1.07999 * 119.27101 * 180.02562 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 1.2304 5 1 2.6532 -1.5887 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 0.9429 0.8297 2.6034 8 14 2.3213 -1.1206 4.0079 9 1 3.8063 -1.1212 4.0081 10 1 1.8261 -0.4208 5.2204 11 1 1.8257 -2.5203 4.0076 12 7 2.0183 -0.6907 -1.1962 13 6 1.6643 -2.0932 -1.4281 14 6 2.7931 -0.0357 -2.0834 15 8 2.9911 1.1563 -1.9535 16 6 3.4028 -0.7678 -3.2154 17 6 3.7806 -0.0861 -4.3262 18 6 4.3793 -0.8387 -5.4399 19 7 4.7614 -0.2311 -6.5476 20 6 5.2527 -1.0170 -7.6821 21 6 4.3228 -0.8418 -8.8549 22 6 3.2550 -1.7031 -9.0251 23 6 2.3992 -1.5394 -10.0982 24 6 2.6173 -0.5208 -11.0070 25 6 3.6881 0.3373 -10.8397 26 6 4.5411 0.1765 -9.7639 27 6 4.5423 -2.2880 -5.2733 28 6 4.1357 -2.8584 -4.1219 29 7 3.5830 -2.1230 -3.1236 30 1 3.3042 -2.5755 -2.3121 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3633 0.5139 0.8900 33 1 -0.3634 0.5139 -0.8900 34 1 0.7084 1.1608 3.4844 35 1 2.3687 -2.7375 -0.9019 36 1 0.6558 -2.2792 -1.0586 37 1 1.7050 -2.3064 -2.4963 38 1 3.6410 0.9827 -4.3930 39 1 6.2509 -0.6754 -7.9557 40 1 5.2927 -2.0703 -7.4042 41 1 3.0875 -2.5019 -8.3178 42 1 1.5628 -2.2101 -10.2292 43 1 1.9511 -0.3957 -11.8479 44 1 3.8586 1.1328 -11.5500 45 1 5.3779 0.8467 -9.6335 46 1 4.9804 -2.8861 -6.0587 47 1 4.2522 -3.9240 -3.9905 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001121188761.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:04:27 Heat of formation + Delta-G solvation = 52.811923 kcal Electronic energy + Delta-G solvation = -28165.577634 eV Core-core repulsion = 24314.099959 eV Total energy + Delta-G solvation = -3851.477675 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.97367 -40.20073 -39.75065 -37.51388 -36.83824 -34.87095 -33.25375 -32.83648 -31.75717 -31.32881 -30.44776 -28.11516 -27.32926 -27.00893 -25.22879 -23.57602 -23.33935 -22.75269 -21.74619 -20.94375 -19.02817 -18.62258 -18.24009 -17.78551 -17.34923 -17.07566 -16.64247 -16.39554 -16.25123 -16.11566 -15.60092 -15.52494 -14.97864 -14.85580 -14.51876 -14.40909 -14.22134 -14.17160 -13.84241 -13.52815 -13.34100 -13.27382 -13.03648 -13.00014 -12.87238 -12.72698 -12.62667 -12.23254 -12.17818 -12.14943 -11.85834 -11.53953 -11.22922 -11.09341 -10.65572 -10.52546 -10.12559 -9.80137 -9.52803 -9.49271 -8.21946 -8.14265 -6.32224 -0.13621 0.41855 0.52062 0.65272 1.44586 1.46734 1.53816 1.69819 1.89877 2.16972 2.43718 2.66517 2.89199 3.14036 3.25773 3.66917 3.81994 3.95890 4.01572 4.09860 4.14780 4.23013 4.30039 4.35708 4.45643 4.51017 4.60266 4.63703 4.72553 4.80159 4.82480 4.87220 4.91929 4.98508 5.01009 5.12629 5.17905 5.20171 5.40914 5.46387 5.51417 5.58965 5.62459 5.62724 5.75554 5.93244 6.02096 6.10757 6.14181 6.26559 6.56552 6.73704 7.05422 7.16352 7.39585 8.89453 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.023435 B = 0.002139 C = 0.002097 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1194.494073 B =13088.928653 C =13348.844513 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.262 3.738 3 H 0.011 0.989 4 C -0.538 4.538 5 H 0.071 0.929 6 C 0.014 3.986 7 N -0.917 5.917 8 Si 0.967 3.033 9 H -0.277 1.277 10 H -0.290 1.290 11 H -0.258 1.258 12 N -0.588 5.588 13 C 0.050 3.950 14 C 0.539 3.461 15 O -0.576 6.576 16 C 0.118 3.882 17 C -0.136 4.136 18 C 0.234 3.766 19 N -0.606 5.606 20 C 0.083 3.917 21 C -0.087 4.087 22 C -0.125 4.125 23 C -0.128 4.128 24 C -0.132 4.132 25 C -0.129 4.129 26 C -0.123 4.123 27 C -0.296 4.296 28 C 0.164 3.836 29 N -0.602 5.602 30 H 0.430 0.570 31 H 0.054 0.946 32 H 0.069 0.931 33 H 0.018 0.982 34 H 0.264 0.736 35 H 0.084 0.916 36 H 0.087 0.913 37 H 0.100 0.900 38 H 0.125 0.875 39 H 0.076 0.924 40 H 0.069 0.931 41 H 0.127 0.873 42 H 0.141 0.859 43 H 0.143 0.857 44 H 0.139 0.861 45 H 0.120 0.880 46 H 0.164 0.836 47 H 0.220 0.780 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.748 -15.169 -20.323 25.635 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.161 3.839 3 H 0.029 0.971 4 C -0.576 4.576 5 H 0.089 0.911 6 C -0.186 4.186 7 N -0.556 5.556 8 Si 0.792 3.208 9 H -0.203 1.203 10 H -0.216 1.216 11 H -0.183 1.183 12 N -0.318 5.318 13 C -0.092 4.092 14 C 0.325 3.675 15 O -0.456 6.456 16 C 0.008 3.992 17 C -0.164 4.164 18 C 0.058 3.942 19 N -0.323 5.323 20 C -0.046 4.046 21 C -0.087 4.087 22 C -0.144 4.144 23 C -0.146 4.146 24 C -0.150 4.150 25 C -0.147 4.147 26 C -0.142 4.142 27 C -0.324 4.324 28 C 0.036 3.964 29 N -0.221 5.221 30 H 0.277 0.723 31 H 0.073 0.927 32 H 0.088 0.912 33 H 0.037 0.963 34 H 0.073 0.927 35 H 0.102 0.898 36 H 0.106 0.894 37 H 0.118 0.882 38 H 0.143 0.857 39 H 0.094 0.906 40 H 0.087 0.913 41 H 0.145 0.855 42 H 0.159 0.841 43 H 0.161 0.839 44 H 0.157 0.843 45 H 0.138 0.862 46 H 0.181 0.819 47 H 0.236 0.764 Dipole moment (debyes) X Y Z Total from point charges 3.878 -13.564 -20.587 24.957 hybrid contribution 0.240 -0.322 1.431 1.486 sum 4.118 -13.886 -19.156 24.015 Atomic orbital electron populations 1.21911 0.96905 1.00547 1.00085 1.18666 0.91921 0.92342 0.81015 0.97129 1.21505 1.32224 1.13372 0.90500 0.91092 1.25761 0.95043 0.95608 1.02161 1.70025 1.37111 1.23878 1.24563 0.85478 0.78347 0.79064 0.77929 1.20252 1.21579 1.18283 1.48226 1.47946 1.13665 1.21936 1.22413 1.03786 0.80397 1.02554 1.18562 0.79898 0.86718 0.82290 1.90774 1.63222 1.16466 1.75130 1.19496 1.00367 0.84910 0.94476 1.21696 1.03055 0.99756 0.91935 1.21529 0.90149 0.91005 0.91528 1.73119 1.22138 1.35891 1.01198 1.21047 0.96535 0.97664 0.89327 1.19993 0.97054 0.96146 0.95553 1.21229 0.94802 0.99795 0.98545 1.21436 0.99604 0.98862 0.94657 1.21481 0.98041 0.95359 1.00074 1.21433 0.95268 0.99977 0.98032 1.21229 1.00425 0.97511 0.95019 1.22542 1.14620 0.93949 1.01275 1.22309 0.89222 0.98666 0.86238 1.42286 1.55501 1.04191 1.20095 0.72330 0.92694 0.91229 0.96286 0.92657 0.89787 0.89423 0.88227 0.85695 0.90594 0.91259 0.85547 0.84077 0.83902 0.84326 0.86193 0.81908 0.76351 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.17 8.94 71.98 0.64 -5.53 16 2 C 0.26 12.74 2.63 44.24 0.12 12.86 16 3 H 0.01 0.64 6.92 -2.39 -0.02 0.62 16 4 C -0.54 -26.77 8.37 25.60 0.21 -26.55 16 5 H 0.07 3.27 7.51 -2.91 -0.02 3.25 16 6 C 0.01 0.73 5.30 84.66 0.45 1.18 16 7 N -0.92 -50.82 11.32 21.45 0.24 -50.58 16 8 Si 0.97 40.38 29.54 68.60 2.03 42.40 16 9 H -0.28 -11.51 7.11 99.48 0.71 -10.80 16 10 H -0.29 -12.24 7.11 99.48 0.71 -11.53 16 11 H -0.26 -9.98 7.11 99.48 0.71 -9.28 16 12 N -0.59 -22.40 2.75 -830.09 -2.28 -24.69 16 13 C 0.05 1.23 8.00 127.77 1.02 2.25 16 14 C 0.54 21.62 7.54 86.82 0.65 22.27 16 15 O -0.58 -29.18 15.82 -3.80 -0.06 -29.24 16 16 C 0.12 3.58 6.19 40.32 0.25 3.83 16 17 C -0.14 -4.51 9.78 24.02 0.24 -4.28 16 18 C 0.23 6.74 6.98 43.70 0.30 7.04 16 19 N -0.61 -19.00 10.62 -334.06 -3.55 -22.55 16 20 C 0.08 2.04 6.40 85.63 0.55 2.59 16 21 C -0.09 -2.11 5.46 -19.87 -0.11 -2.22 16 22 C -0.13 -2.69 9.70 22.27 0.22 -2.47 16 23 C -0.13 -2.37 10.05 22.27 0.22 -2.15 16 24 C -0.13 -2.35 10.05 22.27 0.22 -2.12 16 25 C -0.13 -2.53 10.05 22.27 0.22 -2.31 16 26 C -0.12 -2.86 9.70 22.27 0.22 -2.65 16 27 C -0.30 -5.49 9.44 23.71 0.22 -5.27 16 28 C 0.16 2.11 11.12 83.29 0.93 3.03 16 29 N -0.60 -11.45 3.94 -184.80 -0.73 -12.18 16 30 H 0.43 6.59 4.67 -92.71 -0.43 6.16 16 31 H 0.05 2.18 6.69 -2.39 -0.02 2.16 16 32 H 0.07 3.56 6.07 -2.38 -0.01 3.55 16 33 H 0.02 0.80 8.14 -2.38 -0.02 0.78 16 34 H 0.26 14.01 8.31 -92.71 -0.77 13.24 16 35 H 0.08 1.65 7.10 -2.39 -0.02 1.64 16 36 H 0.09 2.18 6.45 -2.39 -0.02 2.16 16 37 H 0.10 1.79 5.55 -2.38 -0.01 1.78 16 38 H 0.13 4.79 7.74 -2.91 -0.02 4.77 16 39 H 0.08 1.81 8.08 -2.39 -0.02 1.79 16 40 H 0.07 1.38 5.19 -2.39 -0.01 1.36 16 41 H 0.13 2.34 8.06 -2.91 -0.02 2.31 16 42 H 0.14 1.89 8.06 -2.91 -0.02 1.87 16 43 H 0.14 1.76 8.06 -2.91 -0.02 1.74 16 44 H 0.14 2.04 8.06 -2.91 -0.02 2.02 16 45 H 0.12 2.65 8.06 -2.91 -0.02 2.63 16 46 H 0.16 2.27 5.93 -2.91 -0.02 2.25 16 47 H 0.22 0.26 8.06 -2.91 -0.02 0.23 16 Total: -1.00 -75.42 383.73 2.80 -72.62 By element: Atomic # 1 Polarization: 24.13 SS G_CDS: 0.57 Total: 24.70 kcal Atomic # 6 Polarization: -7.07 SS G_CDS: 6.58 Total: -0.49 kcal Atomic # 7 Polarization: -103.68 SS G_CDS: -6.32 Total: -110.00 kcal Atomic # 8 Polarization: -29.18 SS G_CDS: -0.06 Total: -29.24 kcal Atomic # 14 Polarization: 40.38 SS G_CDS: 2.03 Total: 42.40 kcal Total: -75.42 2.80 -72.62 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001121188761.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.429 kcal (2) G-P(sol) polarization free energy of solvation -75.417 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.012 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.800 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.617 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.812 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds