Wall clock time and date at job start Tue Mar 31 2020 23:20:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.42902 * 113.99933 * 2 1 4 4 H 1.09000 * 109.47153 * 30.00296 * 3 2 1 5 5 C 1.52998 * 109.47402 * 270.00162 * 3 2 1 6 6 C 1.50703 * 109.47204 * 150.00055 * 3 2 1 7 7 O 1.21280 * 119.99744 * 5.00198 * 6 3 2 8 8 N 1.34774 * 120.00117 * 185.00540 * 6 3 2 9 9 C 1.46500 * 120.00147 * 179.97438 * 8 6 3 10 10 C 1.50696 * 109.47316 * 179.97438 * 9 8 6 11 11 N 1.30831 * 125.96396 * 275.00219 * 10 9 8 12 12 C 1.33239 * 109.83166 * 180.02562 * 11 10 9 13 13 C 1.50707 * 125.52614 * 179.97438 * 12 11 10 14 14 H 1.08999 * 109.67562 * 344.99480 * 13 12 11 15 15 C 1.53295 * 109.67875 * 105.51644 * 13 12 11 16 16 O 1.42980 * 109.21308 * 171.98582 * 15 13 12 17 17 C 1.42962 * 114.19699 * 297.47630 * 16 15 13 18 18 C 1.53294 * 109.22644 * 62.56537 * 17 16 15 19 19 N 1.47151 * 109.67768 * 224.47783 * 13 12 11 20 20 C 1.36935 * 120.98209 * 9.76609 * 19 13 12 21 21 H 1.07993 * 120.00559 * 329.93692 * 20 19 13 22 22 C 1.38818 * 119.99661 * 149.94060 * 20 19 13 23 23 N 1.31620 * 120.00047 * 161.74169 * 22 20 19 24 24 Si 1.86795 * 119.99997 * 341.73639 * 22 20 19 25 25 H 1.48503 * 109.47075 * 89.96651 * 24 22 20 26 26 H 1.48505 * 109.47158 * 209.96059 * 24 22 20 27 27 H 1.48502 * 109.47475 * 329.96245 * 24 22 20 28 28 N 1.30711 * 108.94570 * 359.97438 * 12 11 10 29 29 N 1.34430 * 125.96312 * 94.69392 * 10 9 8 30 30 H 0.97002 * 126.81612 * 359.97438 * 29 10 9 31 31 H 1.08997 * 109.47405 * 59.99917 * 1 2 3 32 32 H 1.09003 * 109.46844 * 179.97438 * 1 2 3 33 33 H 1.09001 * 109.47358 * 299.99560 * 1 2 3 34 34 H 1.09002 * 109.46871 * 299.99677 * 5 3 2 35 35 H 1.09001 * 109.47010 * 60.00375 * 5 3 2 36 36 H 1.09005 * 109.46968 * 179.97438 * 5 3 2 37 37 H 0.97001 * 119.99759 * 0.02562 * 8 6 3 38 38 H 1.09002 * 109.47300 * 300.00075 * 9 8 6 39 39 H 1.09005 * 109.47078 * 59.99783 * 9 8 6 40 40 H 1.09001 * 109.51669 * 291.94584 * 15 13 12 41 41 H 1.08998 * 109.51526 * 52.09828 * 15 13 12 42 42 H 1.08999 * 109.51159 * 302.63428 * 17 16 15 43 43 H 1.09000 * 109.51174 * 182.49018 * 17 16 15 44 44 H 1.09003 * 109.68281 * 187.97503 * 18 17 16 45 45 H 1.08998 * 109.67905 * 67.41524 * 18 17 16 46 46 H 0.96997 * 120.00332 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3449 1.9994 0.5139 5 6 2.2176 1.7715 -1.4425 6 6 3.3386 1.2639 0.7104 7 8 3.7896 0.2045 1.0913 8 7 4.0253 2.4041 0.9225 9 6 5.3164 2.3637 1.6136 10 6 5.8725 3.7602 1.7212 11 7 6.5730 4.3809 0.8070 12 6 6.8999 5.5987 1.2374 13 6 7.7049 6.6131 0.4665 14 1 8.2038 6.1259 -0.3712 15 6 6.7792 7.7180 -0.0553 16 8 7.5702 8.7664 -0.6208 17 6 8.4384 9.4138 0.3124 18 6 9.4489 8.3953 0.8523 19 7 8.7076 7.2264 1.3519 20 6 8.9443 6.7238 2.6035 21 1 8.1496 6.2373 3.1493 22 6 10.2060 6.8397 3.1708 23 7 10.3589 6.6972 4.4702 24 14 11.6867 7.1979 2.0898 25 1 11.8738 8.6668 1.9774 26 1 12.8993 6.5894 2.6937 27 1 11.4644 6.6224 0.7390 28 7 6.4093 5.7709 2.4366 29 7 5.7303 4.5879 2.7709 30 1 5.2549 4.4037 3.5962 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3633 -1.0277 -0.0005 33 1 -0.3634 0.5138 0.8900 34 1 2.8829 1.0776 -1.9563 35 1 1.2567 1.8016 -1.9562 36 1 2.6605 2.7675 -1.4424 37 1 3.6643 3.2514 0.6182 38 1 5.1813 1.9482 2.6122 39 1 6.0104 1.7391 1.0510 40 1 6.1174 7.3084 -0.8184 41 1 6.1852 8.1144 0.7681 42 1 7.8509 9.8164 1.1375 43 1 8.9697 10.2243 -0.1865 44 1 10.0215 8.8417 1.6652 45 1 10.1232 8.0881 0.0529 46 1 11.2404 6.7786 4.8667 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001130835034.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:20:25 Heat of formation + Delta-G solvation = 10.980692 kcal Electronic energy + Delta-G solvation = -29922.782704 eV Core-core repulsion = 25658.641828 eV Total energy + Delta-G solvation = -4264.140876 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -41.97742 -40.23207 -38.65243 -37.95281 -35.39772 -34.78144 -32.94988 -32.30740 -31.55222 -31.22950 -30.04249 -27.25252 -27.24827 -27.11333 -24.23255 -24.14538 -23.15500 -21.80100 -20.81537 -20.59920 -19.43430 -18.36090 -17.54239 -17.27989 -16.77930 -16.25966 -16.05556 -15.68790 -15.49051 -15.24623 -15.04610 -14.84789 -14.66356 -14.12779 -14.02679 -13.85444 -13.69012 -13.50315 -13.25959 -13.00754 -12.76694 -12.55728 -12.21974 -12.16732 -11.78357 -11.65377 -11.58832 -11.53288 -10.87282 -10.62070 -10.44766 -10.38060 -10.00349 -9.89349 -9.85194 -9.78074 -9.60819 -9.48700 -9.46555 -8.82602 -8.53306 -7.01150 -5.95019 -3.37794 1.64352 2.29039 2.52120 2.87422 3.14993 3.28688 3.46925 3.50546 3.62082 3.90947 4.25779 4.28438 4.44670 4.50597 4.55347 4.66661 4.86423 4.87537 4.94689 4.96920 5.13906 5.26449 5.28208 5.31487 5.39020 5.44336 5.56472 5.63436 5.69737 5.79261 5.89847 5.93222 5.93661 6.15656 6.29449 6.44382 6.52556 6.57895 6.62221 6.72951 7.09452 7.23051 7.57354 7.86728 7.87452 8.34386 8.38306 8.92480 9.67281 9.99707 11.19396 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.018272 B = 0.002605 C = 0.002393 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1532.003274 B =10745.031117 C =11698.566441 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.360 6.360 3 C 0.072 3.928 4 H 0.088 0.912 5 C -0.172 4.172 6 C 0.518 3.482 7 O -0.515 6.515 8 N -0.722 5.722 9 C 0.209 3.791 10 C 0.241 3.759 11 N -0.514 5.514 12 C 0.246 3.754 13 C 0.229 3.771 14 H 0.070 0.930 15 C 0.061 3.939 16 O -0.385 6.385 17 C 0.044 3.956 18 C 0.095 3.905 19 N -0.602 5.602 20 C -0.267 4.267 21 H 0.112 0.888 22 C 0.027 3.973 23 N -0.908 5.908 24 Si 0.879 3.121 25 H -0.286 1.286 26 H -0.303 1.303 27 H -0.270 1.270 28 N -0.245 5.245 29 N -0.477 5.477 30 H 0.437 0.563 31 H 0.044 0.956 32 H 0.091 0.909 33 H 0.044 0.956 34 H 0.073 0.927 35 H 0.070 0.930 36 H 0.075 0.925 37 H 0.405 0.595 38 H 0.092 0.908 39 H 0.107 0.893 40 H 0.090 0.910 41 H 0.054 0.946 42 H 0.054 0.946 43 H 0.088 0.912 44 H 0.085 0.915 45 H 0.037 0.963 46 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.451 -5.719 -9.208 22.268 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.277 6.277 3 C 0.010 3.990 4 H 0.105 0.895 5 C -0.230 4.230 6 C 0.302 3.698 7 O -0.388 6.388 8 N -0.378 5.378 9 C 0.083 3.917 10 C -0.038 4.038 11 N -0.243 5.243 12 C -0.036 4.036 13 C 0.121 3.879 14 H 0.087 0.913 15 C -0.019 4.019 16 O -0.303 6.303 17 C -0.034 4.034 18 C -0.030 4.030 19 N -0.328 5.328 20 C -0.395 4.395 21 H 0.129 0.871 22 C -0.172 4.172 23 N -0.551 5.551 24 Si 0.709 3.291 25 H -0.214 1.214 26 H -0.231 1.231 27 H -0.195 1.195 28 N -0.073 5.073 29 N -0.197 5.197 30 H 0.282 0.718 31 H 0.063 0.937 32 H 0.109 0.891 33 H 0.062 0.938 34 H 0.092 0.908 35 H 0.089 0.911 36 H 0.094 0.906 37 H 0.240 0.760 38 H 0.110 0.890 39 H 0.125 0.875 40 H 0.108 0.892 41 H 0.072 0.928 42 H 0.072 0.928 43 H 0.106 0.894 44 H 0.103 0.897 45 H 0.055 0.945 46 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -18.677 -6.113 -8.910 21.577 hybrid contribution 0.466 0.452 0.386 0.756 sum -18.211 -5.661 -8.523 20.888 Atomic orbital electron populations 1.22895 0.80471 1.03363 1.00094 1.88059 1.19749 1.24999 1.94934 1.21901 0.93137 0.87010 0.96930 0.89473 1.22248 1.03601 1.02370 0.94737 1.20369 0.86238 0.83691 0.79456 1.90758 1.69077 1.29501 1.49507 1.45849 1.21185 1.10035 1.60735 1.19523 0.84732 0.88010 0.99431 1.23823 0.98694 0.95277 0.86026 1.70251 1.17045 1.06498 1.30521 1.23856 0.97267 0.92247 0.90272 1.19449 0.88825 0.88521 0.91145 0.91274 1.22912 0.92489 0.88261 0.98221 1.87840 1.56371 1.49666 1.36418 1.23118 0.92619 0.94934 0.92693 1.22065 0.94241 0.88170 0.98509 1.44295 1.43561 1.29986 1.14987 1.19471 0.95979 1.35216 0.88844 0.87062 1.25344 0.97120 0.99117 0.95624 1.69798 1.23130 1.52943 1.09264 0.87025 0.83376 0.77243 0.81453 1.21397 1.23081 1.19501 1.78456 1.11926 1.01898 1.15052 1.48269 1.42267 1.11997 1.17122 0.71799 0.93733 0.89055 0.93779 0.90761 0.91110 0.90627 0.76046 0.88950 0.87532 0.89214 0.92762 0.92800 0.89414 0.89704 0.94538 0.92788 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.17 10.82 101.05 1.09 1.26 16 2 O -0.36 -3.59 9.89 -55.09 -0.54 -4.13 16 3 C 0.07 0.57 3.13 -27.88 -0.09 0.48 16 4 H 0.09 0.45 7.79 -51.93 -0.40 0.05 16 5 C -0.17 -1.08 9.48 37.16 0.35 -0.73 16 6 C 0.52 5.53 7.18 -10.99 -0.08 5.45 16 7 O -0.51 -7.78 16.51 -14.30 -0.24 -8.01 16 8 N -0.72 -6.49 5.51 -61.47 -0.34 -6.83 16 9 C 0.21 2.26 6.30 -5.20 -0.03 2.23 16 10 C 0.24 3.39 7.61 -155.70 -1.18 2.21 16 11 N -0.51 -9.03 11.19 -8.16 -0.09 -9.12 16 12 C 0.25 4.88 6.12 -156.85 -0.96 3.92 16 13 C 0.23 4.71 3.62 -68.57 -0.25 4.46 16 14 H 0.07 1.44 8.14 -51.93 -0.42 1.02 16 15 C 0.06 1.06 6.27 37.31 0.23 1.29 16 16 O -0.38 -6.97 10.74 -35.23 -0.38 -7.34 16 17 C 0.04 0.79 6.99 37.31 0.26 1.05 16 18 C 0.10 2.06 4.39 -3.53 -0.02 2.04 16 19 N -0.60 -14.33 2.78 -165.61 -0.46 -14.79 16 20 C -0.27 -7.39 9.22 -15.06 -0.14 -7.53 16 21 H 0.11 3.25 5.10 -52.49 -0.27 2.98 16 22 C 0.03 0.78 5.26 -17.43 -0.09 0.69 16 23 N -0.91 -27.84 13.97 55.49 0.78 -27.06 16 24 Si 0.88 22.36 24.31 -169.99 -4.13 18.23 16 25 H -0.29 -6.89 6.58 56.52 0.37 -6.52 16 26 H -0.30 -7.90 7.11 56.52 0.40 -7.50 16 27 H -0.27 -6.84 6.69 56.52 0.38 -6.46 16 28 N -0.25 -4.86 10.04 32.42 0.33 -4.54 16 29 N -0.48 -7.02 7.45 32.62 0.24 -6.77 16 30 H 0.44 4.83 8.96 -182.34 -1.63 3.20 16 31 H 0.04 0.19 7.87 -51.93 -0.41 -0.22 16 32 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.04 0.21 8.09 -51.93 -0.42 -0.21 16 34 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 35 H 0.07 0.34 7.87 -51.93 -0.41 -0.07 16 36 H 0.07 0.39 7.93 -51.93 -0.41 -0.02 16 37 H 0.40 2.89 8.25 -40.82 -0.34 2.55 16 38 H 0.09 0.88 8.14 -51.93 -0.42 0.45 16 39 H 0.11 1.26 8.14 -51.93 -0.42 0.83 16 40 H 0.09 1.31 8.14 -51.93 -0.42 0.89 16 41 H 0.05 0.97 8.13 -51.93 -0.42 0.55 16 42 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 43 H 0.09 1.31 8.14 -51.93 -0.42 0.88 16 44 H 0.08 1.95 4.95 -51.93 -0.26 1.69 16 45 H 0.04 0.79 6.86 -51.93 -0.36 0.43 16 46 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 LS Contribution 374.38 15.07 5.64 5.64 Total: -1.00 -37.34 374.38 -7.99 -45.34 By element: Atomic # 1 Polarization: 10.48 SS G_CDS: -7.90 Total: 2.58 kcal Atomic # 6 Polarization: 17.72 SS G_CDS: -0.90 Total: 16.82 kcal Atomic # 7 Polarization: -69.57 SS G_CDS: 0.45 Total: -69.12 kcal Atomic # 8 Polarization: -18.33 SS G_CDS: -1.16 Total: -19.49 kcal Atomic # 14 Polarization: 22.36 SS G_CDS: -4.13 Total: 18.23 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -37.34 -7.99 -45.34 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001130835034.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.318 kcal (2) G-P(sol) polarization free energy of solvation -37.344 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.974 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.993 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.337 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.981 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds