Wall clock time and date at job start Tue Mar 31 2020 23:20:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.42902 * 113.99933 * 2 1 4 4 H 1.09000 * 109.47153 * 30.00296 * 3 2 1 5 5 C 1.52998 * 109.47402 * 270.00162 * 3 2 1 6 6 C 1.50703 * 109.47204 * 150.00055 * 3 2 1 7 7 O 1.21280 * 119.99744 * 5.00198 * 6 3 2 8 8 N 1.34774 * 120.00117 * 185.00540 * 6 3 2 9 9 C 1.46500 * 120.00147 * 179.97438 * 8 6 3 10 10 C 1.50696 * 109.47316 * 179.97438 * 9 8 6 11 11 N 1.30831 * 125.96396 * 275.00219 * 10 9 8 12 12 C 1.33239 * 109.83166 * 180.02562 * 11 10 9 13 13 C 1.50707 * 125.52614 * 179.97438 * 12 11 10 14 14 H 1.08999 * 109.67562 * 344.99480 * 13 12 11 15 15 C 1.53295 * 109.67875 * 105.51644 * 13 12 11 16 16 O 1.42980 * 109.21308 * 171.98582 * 15 13 12 17 17 C 1.42962 * 114.19699 * 297.47630 * 16 15 13 18 18 C 1.53294 * 109.22644 * 62.56537 * 17 16 15 19 19 N 1.47151 * 109.67768 * 224.47783 * 13 12 11 20 20 C 1.36935 * 120.98209 * 9.76609 * 19 13 12 21 21 H 1.07993 * 120.00559 * 329.93692 * 20 19 13 22 22 C 1.38818 * 119.99661 * 149.94060 * 20 19 13 23 23 N 1.31620 * 120.00047 * 161.74169 * 22 20 19 24 24 Si 1.86795 * 119.99997 * 341.73639 * 22 20 19 25 25 H 1.48503 * 109.47075 * 89.96651 * 24 22 20 26 26 H 1.48505 * 109.47158 * 209.96059 * 24 22 20 27 27 H 1.48502 * 109.47475 * 329.96245 * 24 22 20 28 28 N 1.30711 * 108.94570 * 359.97438 * 12 11 10 29 29 N 1.34430 * 125.96312 * 94.69392 * 10 9 8 30 30 H 0.97002 * 126.81612 * 359.97438 * 29 10 9 31 31 H 1.08997 * 109.47405 * 59.99917 * 1 2 3 32 32 H 1.09003 * 109.46844 * 179.97438 * 1 2 3 33 33 H 1.09001 * 109.47358 * 299.99560 * 1 2 3 34 34 H 1.09002 * 109.46871 * 299.99677 * 5 3 2 35 35 H 1.09001 * 109.47010 * 60.00375 * 5 3 2 36 36 H 1.09005 * 109.46968 * 179.97438 * 5 3 2 37 37 H 0.97001 * 119.99759 * 0.02562 * 8 6 3 38 38 H 1.09002 * 109.47300 * 300.00075 * 9 8 6 39 39 H 1.09005 * 109.47078 * 59.99783 * 9 8 6 40 40 H 1.09001 * 109.51669 * 291.94584 * 15 13 12 41 41 H 1.08998 * 109.51526 * 52.09828 * 15 13 12 42 42 H 1.08999 * 109.51159 * 302.63428 * 17 16 15 43 43 H 1.09000 * 109.51174 * 182.49018 * 17 16 15 44 44 H 1.09003 * 109.68281 * 187.97503 * 18 17 16 45 45 H 1.08998 * 109.67905 * 67.41524 * 18 17 16 46 46 H 0.96997 * 120.00332 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3449 1.9994 0.5139 5 6 2.2176 1.7715 -1.4425 6 6 3.3386 1.2639 0.7104 7 8 3.7896 0.2045 1.0913 8 7 4.0253 2.4041 0.9225 9 6 5.3164 2.3637 1.6136 10 6 5.8725 3.7602 1.7212 11 7 6.5730 4.3809 0.8070 12 6 6.8999 5.5987 1.2374 13 6 7.7049 6.6131 0.4665 14 1 8.2038 6.1259 -0.3712 15 6 6.7792 7.7180 -0.0553 16 8 7.5702 8.7664 -0.6208 17 6 8.4384 9.4138 0.3124 18 6 9.4489 8.3953 0.8523 19 7 8.7076 7.2264 1.3519 20 6 8.9443 6.7238 2.6035 21 1 8.1496 6.2373 3.1493 22 6 10.2060 6.8397 3.1708 23 7 10.3589 6.6972 4.4702 24 14 11.6867 7.1979 2.0898 25 1 11.8738 8.6668 1.9774 26 1 12.8993 6.5894 2.6937 27 1 11.4644 6.6224 0.7390 28 7 6.4093 5.7709 2.4366 29 7 5.7303 4.5879 2.7709 30 1 5.2549 4.4037 3.5962 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3633 -1.0277 -0.0005 33 1 -0.3634 0.5138 0.8900 34 1 2.8829 1.0776 -1.9563 35 1 1.2567 1.8016 -1.9562 36 1 2.6605 2.7675 -1.4424 37 1 3.6643 3.2514 0.6182 38 1 5.1813 1.9482 2.6122 39 1 6.0104 1.7391 1.0510 40 1 6.1174 7.3084 -0.8184 41 1 6.1852 8.1144 0.7681 42 1 7.8509 9.8164 1.1375 43 1 8.9697 10.2243 -0.1865 44 1 10.0215 8.8417 1.6652 45 1 10.1232 8.0881 0.0529 46 1 11.2404 6.7786 4.8667 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001130835034.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:20:24 Heat of formation + Delta-G solvation = -19.817160 kcal Electronic energy + Delta-G solvation = -29924.118199 eV Core-core repulsion = 25658.641828 eV Total energy + Delta-G solvation = -4265.476371 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -43.31193 -41.05623 -40.17344 -38.62544 -36.70803 -36.14502 -34.43554 -33.39918 -33.22786 -32.47378 -31.31089 -29.03332 -28.18516 -27.65790 -25.72893 -25.03175 -24.82384 -23.19700 -21.94109 -21.57412 -21.05486 -19.51256 -18.71940 -18.31819 -18.04998 -17.68429 -17.17776 -16.96083 -16.54873 -16.33254 -16.13339 -16.01934 -15.91119 -15.77346 -15.38581 -15.33772 -14.73414 -14.54141 -14.35771 -14.18559 -13.77697 -13.59046 -13.55164 -13.30051 -13.23406 -12.98514 -12.73206 -12.49416 -12.40812 -12.23315 -12.10653 -11.67001 -11.51367 -11.20595 -11.17279 -11.12155 -11.06229 -10.70452 -10.55025 -10.35547 -10.22422 -8.93328 -8.13024 -5.51754 0.42946 1.25893 1.38711 1.44354 1.47284 1.49942 1.64877 2.03679 2.41698 2.66718 2.83950 3.02469 3.12519 3.21908 3.56766 3.62548 3.72356 3.93785 4.00514 4.04943 4.16832 4.25582 4.34794 4.39115 4.48218 4.48965 4.49181 4.58031 4.65654 4.70192 4.82533 4.82745 4.89906 4.89969 5.05659 5.09168 5.18712 5.23242 5.27352 5.87057 6.03675 6.09781 6.14753 6.29092 6.39211 6.84013 7.05433 7.07162 7.56984 7.95193 9.04661 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.018272 B = 0.002605 C = 0.002393 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1532.003274 B =10745.031117 C =11698.566441 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.396 6.396 3 C 0.073 3.927 4 H 0.120 0.880 5 C -0.168 4.168 6 C 0.517 3.483 7 O -0.565 6.565 8 N -0.707 5.707 9 C 0.215 3.785 10 C 0.265 3.735 11 N -0.535 5.535 12 C 0.233 3.767 13 C 0.223 3.777 14 H 0.065 0.935 15 C 0.071 3.929 16 O -0.383 6.383 17 C 0.053 3.947 18 C 0.087 3.913 19 N -0.616 5.616 20 C -0.247 4.247 21 H 0.093 0.907 22 C -0.034 4.034 23 N -0.958 5.958 24 Si 0.935 3.065 25 H -0.265 1.265 26 H -0.316 1.316 27 H -0.269 1.269 28 N -0.286 5.286 29 N -0.464 5.464 30 H 0.453 0.547 31 H 0.063 0.937 32 H 0.094 0.906 33 H 0.055 0.945 34 H 0.054 0.946 35 H 0.089 0.911 36 H 0.089 0.911 37 H 0.417 0.583 38 H 0.110 0.890 39 H 0.100 0.900 40 H 0.122 0.878 41 H 0.049 0.951 42 H 0.052 0.948 43 H 0.125 0.875 44 H 0.068 0.932 45 H 0.039 0.961 46 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.360 -4.902 -11.169 24.597 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.315 6.315 3 C 0.012 3.988 4 H 0.138 0.862 5 C -0.225 4.225 6 C 0.304 3.696 7 O -0.442 6.442 8 N -0.363 5.363 9 C 0.088 3.912 10 C -0.014 4.014 11 N -0.265 5.265 12 C -0.050 4.050 13 C 0.115 3.885 14 H 0.083 0.917 15 C -0.008 4.008 16 O -0.301 6.301 17 C -0.024 4.024 18 C -0.038 4.038 19 N -0.343 5.343 20 C -0.377 4.377 21 H 0.110 0.890 22 C -0.228 4.228 23 N -0.604 5.604 24 Si 0.765 3.235 25 H -0.191 1.191 26 H -0.245 1.245 27 H -0.194 1.194 28 N -0.115 5.115 29 N -0.185 5.185 30 H 0.301 0.699 31 H 0.081 0.919 32 H 0.112 0.888 33 H 0.074 0.926 34 H 0.073 0.927 35 H 0.108 0.892 36 H 0.108 0.892 37 H 0.254 0.746 38 H 0.128 0.872 39 H 0.118 0.882 40 H 0.140 0.860 41 H 0.067 0.933 42 H 0.070 0.930 43 H 0.143 0.857 44 H 0.086 0.914 45 H 0.057 0.943 46 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -20.637 -5.246 -10.913 23.928 hybrid contribution 0.899 0.094 0.986 1.337 sum -19.739 -5.152 -9.928 22.688 Atomic orbital electron populations 1.23092 0.78574 1.04167 1.01537 1.88013 1.21951 1.26353 1.95166 1.22034 0.91828 0.87170 0.97746 0.86223 1.22245 1.04357 1.02392 0.93528 1.20994 0.87031 0.82946 0.78614 1.90737 1.70447 1.31292 1.51758 1.45675 1.20169 1.10452 1.60015 1.19540 0.85409 0.85591 1.00635 1.24252 0.96745 0.95605 0.84817 1.70240 1.18422 1.06057 1.31801 1.23791 0.97740 0.92962 0.90503 1.19639 0.88677 0.89745 0.90440 0.91746 1.22901 0.91848 0.87070 0.98972 1.87854 1.56225 1.49633 1.36414 1.23089 0.91791 0.94444 0.93111 1.22165 0.95230 0.88428 0.97968 1.44436 1.44339 1.31106 1.14451 1.19528 0.95310 1.32829 0.90022 0.88989 1.25927 0.99725 1.00699 0.96492 1.69924 1.23280 1.56329 1.10912 0.86095 0.79762 0.78210 0.79472 1.19098 1.24513 1.19383 1.78312 1.13372 1.04360 1.15438 1.48114 1.41639 1.10820 1.17938 0.69899 0.91885 0.88764 0.92635 0.92730 0.89194 0.89243 0.74588 0.87176 0.88229 0.86008 0.93252 0.92955 0.85728 0.91379 0.94268 0.93240 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.21 10.82 113.37 1.23 1.44 16 2 O -0.40 -7.38 9.89 -129.99 -1.29 -8.67 16 3 C 0.07 1.00 3.13 29.85 0.09 1.09 16 4 H 0.12 0.83 7.79 -2.39 -0.02 0.81 16 5 C -0.17 -1.71 9.48 71.98 0.68 -1.03 16 6 C 0.52 10.36 7.18 87.66 0.63 10.98 16 7 O -0.57 -16.96 16.51 15.96 0.26 -16.69 16 8 N -0.71 -11.35 5.51 -466.78 -2.57 -13.92 16 9 C 0.21 4.33 6.30 85.63 0.54 4.87 16 10 C 0.27 7.13 7.61 138.22 1.05 8.19 16 11 N -0.54 -18.31 11.19 -179.73 -2.01 -20.32 16 12 C 0.23 9.10 6.12 138.63 0.85 9.95 16 13 C 0.22 8.92 3.62 44.22 0.16 9.08 16 14 H 0.06 2.63 8.14 -2.39 -0.02 2.61 16 15 C 0.07 2.32 6.27 72.08 0.45 2.77 16 16 O -0.38 -12.71 10.74 -148.98 -1.60 -14.31 16 17 C 0.05 1.77 6.99 72.08 0.50 2.27 16 18 C 0.09 3.61 4.39 86.35 0.38 3.99 16 19 N -0.62 -29.03 2.78 -677.86 -1.89 -30.92 16 20 C -0.25 -13.87 9.22 84.04 0.78 -13.09 16 21 H 0.09 5.50 5.10 -2.91 -0.01 5.49 16 22 C -0.03 -2.01 5.26 84.86 0.45 -1.56 16 23 N -0.96 -60.45 13.97 21.65 0.30 -60.15 16 24 Si 0.94 46.81 24.31 68.60 1.67 48.47 16 25 H -0.26 -12.16 6.58 99.48 0.65 -11.50 16 26 H -0.32 -16.34 7.11 99.48 0.71 -15.63 16 27 H -0.27 -13.19 6.69 99.48 0.67 -12.53 16 28 N -0.29 -11.25 10.04 -51.33 -0.52 -11.77 16 29 N -0.46 -13.21 7.45 -50.71 -0.38 -13.59 16 30 H 0.45 9.47 8.96 -213.10 -1.91 7.56 16 31 H 0.06 0.36 7.87 -2.39 -0.02 0.34 16 32 H 0.09 0.81 8.14 -2.39 -0.02 0.79 16 33 H 0.06 0.39 8.09 -2.39 -0.02 0.38 16 34 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 35 H 0.09 0.59 7.87 -2.39 -0.02 0.57 16 36 H 0.09 0.65 7.93 -2.38 -0.02 0.63 16 37 H 0.42 4.83 8.25 -92.71 -0.76 4.07 16 38 H 0.11 1.91 8.14 -2.39 -0.02 1.89 16 39 H 0.10 2.26 8.14 -2.38 -0.02 2.24 16 40 H 0.12 3.17 8.14 -2.39 -0.02 3.15 16 41 H 0.05 1.67 8.13 -2.39 -0.02 1.65 16 42 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 43 H 0.12 3.22 8.14 -2.39 -0.02 3.20 16 44 H 0.07 3.05 4.95 -2.39 -0.01 3.04 16 45 H 0.04 1.62 6.86 -2.39 -0.02 1.60 16 46 H 0.26 15.64 8.31 -92.71 -0.77 14.87 16 Total: -1.00 -83.26 374.38 -1.96 -85.22 By element: Atomic # 1 Polarization: 19.45 SS G_CDS: -1.73 Total: 17.72 kcal Atomic # 6 Polarization: 31.15 SS G_CDS: 7.79 Total: 38.94 kcal Atomic # 7 Polarization: -143.61 SS G_CDS: -7.06 Total: -150.67 kcal Atomic # 8 Polarization: -37.05 SS G_CDS: -2.62 Total: -39.67 kcal Atomic # 14 Polarization: 46.81 SS G_CDS: 1.67 Total: 48.47 kcal Total: -83.26 -1.96 -85.22 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001130835034.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.398 kcal (2) G-P(sol) polarization free energy of solvation -83.259 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.860 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.957 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.216 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.817 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds