Wall clock time and date at job start Tue Mar 31 2020 23:20:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42901 * 114.00065 * 2 1 4 4 H 1.09004 * 109.46929 * 330.00433 * 3 2 1 5 5 C 1.52998 * 109.47249 * 90.00041 * 3 2 1 6 6 C 1.50695 * 109.47146 * 210.00750 * 3 2 1 7 7 O 1.21280 * 120.00098 * 359.97438 * 6 3 2 8 8 N 1.34780 * 120.00042 * 180.02562 * 6 3 2 9 9 C 1.46500 * 119.99991 * 179.97438 * 8 6 3 10 10 C 1.50700 * 109.46999 * 179.97438 * 9 8 6 11 11 N 1.30837 * 125.96173 * 275.00190 * 10 9 8 12 12 C 1.33241 * 109.83253 * 179.97438 * 11 10 9 13 13 C 1.50698 * 125.53011 * 179.97438 * 12 11 10 14 14 H 1.08995 * 109.70579 * 345.54001 * 13 12 11 15 15 C 1.53712 * 109.74465 * 106.30270 * 13 12 11 16 16 O 1.42963 * 109.14397 * 172.16420 * 15 13 12 17 17 C 1.42963 * 114.17116 * 297.28736 * 16 15 13 18 18 C 1.53300 * 109.21856 * 62.58186 * 17 16 15 19 19 N 1.47149 * 109.68366 * 224.99907 * 13 12 11 20 20 C 1.36944 * 120.97776 * 9.76370 * 19 13 12 21 21 H 1.07998 * 120.00348 * 326.80429 * 20 19 13 22 22 C 1.38809 * 119.99792 * 146.81681 * 20 19 13 23 23 N 1.31614 * 120.00347 * 145.62045 * 22 20 19 24 24 Si 1.86805 * 120.00005 * 325.62000 * 22 20 19 25 25 H 1.48495 * 109.47070 * 270.00514 * 24 22 20 26 26 H 1.48504 * 109.46767 * 30.00008 * 24 22 20 27 27 H 1.48497 * 109.47180 * 150.00123 * 24 22 20 28 28 N 1.30723 * 108.94065 * 0.25813 * 12 11 10 29 29 N 1.34427 * 125.96268 * 94.96920 * 10 9 8 30 30 H 0.96997 * 126.82425 * 0.03289 * 29 10 9 31 31 H 1.08993 * 109.47413 * 59.99966 * 1 2 3 32 32 H 1.09000 * 109.47076 * 179.97438 * 1 2 3 33 33 H 1.09002 * 109.46723 * 299.99663 * 1 2 3 34 34 H 1.09004 * 109.46834 * 60.00334 * 5 3 2 35 35 H 1.08998 * 109.47434 * 179.97438 * 5 3 2 36 36 H 1.09002 * 109.47241 * 300.00533 * 5 3 2 37 37 H 0.97005 * 119.99846 * 359.97438 * 8 6 3 38 38 H 1.09003 * 109.47399 * 59.99737 * 9 8 6 39 39 H 1.08995 * 109.47162 * 299.99365 * 9 8 6 40 40 H 1.09002 * 109.65491 * 52.20087 * 15 13 12 41 41 H 1.09001 * 109.48699 * 292.02709 * 15 13 12 42 42 H 1.09001 * 109.51548 * 302.66334 * 17 16 15 43 43 H 1.08994 * 109.51359 * 182.50178 * 17 16 15 44 44 H 1.08991 * 109.68303 * 187.97408 * 18 17 16 45 45 H 1.09005 * 109.68159 * 67.42061 * 18 17 16 46 46 H 0.96995 * 119.99991 * 359.46103 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 1 1.3449 1.9994 -0.5138 5 6 2.2177 1.7714 1.4425 6 6 3.3385 1.2639 -0.7105 7 8 3.7475 0.2192 -1.1712 8 7 4.0726 2.3876 -0.8333 9 6 5.3642 2.3471 -1.5235 10 6 5.9771 3.7238 -1.5236 11 7 5.7348 4.6726 -2.3913 12 6 6.4488 5.7559 -2.0878 13 6 6.4401 7.0535 -2.8540 14 1 5.9715 6.9029 -3.8265 15 6 5.6663 8.1193 -2.0616 16 8 5.8196 9.3861 -2.7062 17 6 7.1675 9.8605 -2.7514 18 6 8.0182 8.8859 -3.5739 19 7 7.8202 7.5302 -3.0372 20 6 8.8887 6.7334 -2.7229 21 1 8.8194 6.0367 -1.9006 22 6 10.0609 6.8214 -3.4611 23 7 11.2247 6.6491 -2.8710 24 14 9.9867 7.1843 -5.2920 25 1 9.9004 5.9082 -6.0464 26 1 8.7901 8.0139 -5.5840 27 1 11.2105 7.9193 -5.7009 28 7 7.1627 5.5083 -1.0211 29 7 6.8676 4.1916 -0.6319 30 1 7.2361 3.7134 0.1273 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3633 -1.0277 -0.0005 33 1 -0.3633 0.5138 0.8900 34 1 2.8831 1.0775 1.9563 35 1 2.6615 2.7669 1.4425 36 1 1.2569 1.8014 1.9564 37 1 3.7457 3.2232 -0.4645 38 1 5.2166 2.0154 -2.5513 39 1 6.0292 1.6531 -1.0096 40 1 6.0582 8.1776 -1.0461 41 1 4.6099 7.8527 -2.0293 42 1 7.5649 9.9252 -1.7385 43 1 7.1911 10.8461 -3.2163 44 1 9.0699 9.1613 -3.4967 45 1 7.7058 8.9167 -4.6178 46 1 11.2637 6.4684 -1.9189 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001130835036.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:20:33 Heat of formation + Delta-G solvation = 8.379006 kcal Electronic energy + Delta-G solvation = -29931.351141 eV Core-core repulsion = 25667.097448 eV Total energy + Delta-G solvation = -4264.253694 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -41.98437 -40.25519 -38.55906 -37.96413 -35.40789 -34.72469 -32.94533 -32.35516 -31.57976 -31.19200 -29.99469 -27.25905 -27.11895 -26.99240 -24.19700 -24.14745 -22.77357 -21.73570 -20.81428 -20.59170 -19.37781 -18.39137 -17.62082 -17.34732 -17.07910 -16.34260 -15.90739 -15.68284 -15.54171 -15.16691 -15.10807 -14.90772 -14.56100 -14.03547 -13.95870 -13.81777 -13.54574 -13.47913 -13.40812 -13.02873 -12.81717 -12.52769 -12.26386 -12.20995 -11.95146 -11.65701 -11.57635 -11.21409 -10.82636 -10.55623 -10.45565 -10.07292 -9.97318 -9.90822 -9.78607 -9.66897 -9.58914 -9.49236 -9.29571 -8.85355 -8.13690 -7.04897 -6.30672 -3.33269 1.62095 2.27168 2.50275 2.85279 3.15221 3.49514 3.56700 3.60092 3.70376 3.90367 4.23978 4.31532 4.42495 4.54004 4.61080 4.69147 4.85872 4.88280 4.95148 4.98593 5.04974 5.21516 5.27719 5.30449 5.38250 5.44751 5.59821 5.60517 5.66875 5.85571 5.91093 5.97279 5.99806 6.22881 6.36991 6.52000 6.56509 6.56696 6.71157 6.80631 7.07174 7.20186 7.62525 7.84555 8.11782 8.35850 8.47226 9.04708 9.57593 10.19683 11.03327 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.017231 B = 0.002627 C = 0.002435 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1624.560423 B =10654.496141 C =11497.653968 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.360 6.360 3 C 0.071 3.929 4 H 0.091 0.909 5 C -0.172 4.172 6 C 0.518 3.482 7 O -0.515 6.515 8 N -0.722 5.722 9 C 0.209 3.791 10 C 0.240 3.760 11 N -0.515 5.515 12 C 0.252 3.748 13 C 0.221 3.779 14 H 0.066 0.934 15 C 0.063 3.937 16 O -0.386 6.386 17 C 0.040 3.960 18 C 0.112 3.888 19 N -0.593 5.593 20 C -0.367 4.367 21 H 0.090 0.910 22 C 0.005 3.995 23 N -0.899 5.899 24 Si 1.019 2.981 25 H -0.298 1.298 26 H -0.268 1.268 27 H -0.294 1.294 28 N -0.250 5.250 29 N -0.480 5.480 30 H 0.436 0.564 31 H 0.045 0.955 32 H 0.091 0.909 33 H 0.044 0.956 34 H 0.072 0.928 35 H 0.072 0.928 36 H 0.071 0.929 37 H 0.405 0.595 38 H 0.106 0.894 39 H 0.092 0.908 40 H 0.051 0.949 41 H 0.086 0.914 42 H 0.049 0.951 43 H 0.086 0.914 44 H 0.078 0.922 45 H 0.043 0.957 46 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.825 -5.936 8.502 22.373 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.278 6.278 3 C 0.009 3.991 4 H 0.109 0.891 5 C -0.230 4.230 6 C 0.303 3.697 7 O -0.389 6.389 8 N -0.378 5.378 9 C 0.083 3.917 10 C -0.039 4.039 11 N -0.244 5.244 12 C -0.031 4.031 13 C 0.112 3.888 14 H 0.084 0.916 15 C -0.017 4.017 16 O -0.304 6.304 17 C -0.038 4.038 18 C -0.014 4.014 19 N -0.320 5.320 20 C -0.495 4.495 21 H 0.107 0.893 22 C -0.200 4.200 23 N -0.536 5.536 24 Si 0.849 3.151 25 H -0.226 1.226 26 H -0.194 1.194 27 H -0.220 1.220 28 N -0.078 5.078 29 N -0.200 5.200 30 H 0.281 0.719 31 H 0.064 0.936 32 H 0.110 0.890 33 H 0.062 0.938 34 H 0.091 0.909 35 H 0.091 0.909 36 H 0.090 0.910 37 H 0.240 0.760 38 H 0.124 0.876 39 H 0.110 0.890 40 H 0.069 0.931 41 H 0.104 0.896 42 H 0.067 0.933 43 H 0.104 0.896 44 H 0.096 0.904 45 H 0.060 0.940 46 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -18.354 -6.060 6.749 20.473 hybrid contribution -0.614 -0.368 1.984 2.109 sum -18.968 -6.428 8.733 21.849 Atomic orbital electron populations 1.22900 0.80388 1.03379 1.00154 1.88049 1.19846 1.24943 1.94917 1.21900 0.93290 0.87157 0.96708 0.89129 1.22255 1.03660 1.02037 0.95002 1.20366 0.85944 0.83498 0.79914 1.90757 1.71023 1.30059 1.47021 1.45856 1.20661 1.11871 1.59418 1.19518 0.83796 0.87816 1.00552 1.23836 0.93478 0.96960 0.89600 1.70265 1.27937 0.99846 1.26360 1.23912 0.91160 0.95560 0.92429 1.19625 0.89607 0.84592 0.94960 0.91640 1.22942 0.99394 0.83988 0.95375 1.87827 1.27538 1.35128 1.79929 1.23207 0.82815 0.97387 1.00348 1.22086 0.99249 0.84226 0.95795 1.44328 0.99660 1.11009 1.77023 1.20566 0.91593 1.23479 1.13824 0.89253 1.26223 0.91588 0.97677 1.04466 1.70928 1.24892 1.44880 1.12905 0.84533 0.75721 0.76899 0.77955 1.22558 1.19376 1.22039 1.78439 1.19877 0.92074 1.17377 1.48282 1.34277 1.12493 1.24915 0.71943 0.93646 0.89043 0.93767 0.90924 0.90885 0.91019 0.76037 0.87558 0.89002 0.93067 0.89577 0.93279 0.89557 0.90384 0.93978 0.92436 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.17 10.82 101.05 1.09 1.26 16 2 O -0.36 -3.60 9.88 -55.14 -0.54 -4.15 16 3 C 0.07 0.56 3.14 -27.89 -0.09 0.48 16 4 H 0.09 0.52 7.79 -51.93 -0.40 0.11 16 5 C -0.17 -0.98 9.42 37.16 0.35 -0.63 16 6 C 0.52 5.58 7.23 -10.99 -0.08 5.50 16 7 O -0.51 -7.81 16.50 -14.35 -0.24 -8.04 16 8 N -0.72 -6.60 5.44 -61.47 -0.33 -6.94 16 9 C 0.21 2.29 6.30 -5.19 -0.03 2.26 16 10 C 0.24 3.43 7.61 -155.69 -1.18 2.25 16 11 N -0.51 -9.20 11.19 -8.16 -0.09 -9.29 16 12 C 0.25 5.07 6.14 -156.85 -0.96 4.10 16 13 C 0.22 4.59 3.64 -68.36 -0.25 4.34 16 14 H 0.07 1.39 8.14 -51.93 -0.42 0.96 16 15 C 0.06 1.12 6.29 37.53 0.24 1.36 16 16 O -0.39 -7.13 10.74 -35.23 -0.38 -7.51 16 17 C 0.04 0.73 6.99 37.31 0.26 0.99 16 18 C 0.11 2.39 4.63 -3.53 -0.02 2.37 16 19 N -0.59 -14.08 2.66 -165.37 -0.44 -14.52 16 20 C -0.37 -10.01 8.82 -15.06 -0.13 -10.14 16 21 H 0.09 2.58 5.17 -52.49 -0.27 2.31 16 22 C 0.01 0.14 4.85 -17.43 -0.08 0.06 16 23 N -0.90 -27.32 13.71 55.49 0.76 -26.56 16 24 Si 1.02 25.38 27.28 -169.99 -4.64 20.75 16 25 H -0.30 -7.55 7.11 56.52 0.40 -7.15 16 26 H -0.27 -6.11 4.74 56.52 0.27 -5.84 16 27 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 28 N -0.25 -4.99 10.05 32.42 0.33 -4.66 16 29 N -0.48 -7.12 7.45 32.62 0.24 -6.87 16 30 H 0.44 4.85 8.96 -182.34 -1.63 3.22 16 31 H 0.04 0.23 8.08 -51.93 -0.42 -0.19 16 32 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.04 0.19 7.87 -51.93 -0.41 -0.22 16 34 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 35 H 0.07 0.32 7.56 -51.93 -0.39 -0.08 16 36 H 0.07 0.32 7.87 -51.93 -0.41 -0.09 16 37 H 0.40 2.98 7.88 -40.82 -0.32 2.66 16 38 H 0.11 1.26 8.14 -51.93 -0.42 0.84 16 39 H 0.09 0.89 8.14 -51.93 -0.42 0.46 16 40 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 41 H 0.09 1.31 8.14 -51.93 -0.42 0.89 16 42 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 43 H 0.09 1.29 8.14 -51.93 -0.42 0.87 16 44 H 0.08 1.75 6.50 -51.93 -0.34 1.41 16 45 H 0.04 0.90 6.36 -51.93 -0.33 0.57 16 46 H 0.27 8.06 8.73 -40.82 -0.36 7.71 16 LS Contribution 375.78 15.07 5.66 5.66 Total: -1.00 -36.74 375.78 -8.58 -45.33 By element: Atomic # 1 Polarization: 10.63 SS G_CDS: -8.02 Total: 2.61 kcal Atomic # 6 Polarization: 15.08 SS G_CDS: -0.89 Total: 14.19 kcal Atomic # 7 Polarization: -69.30 SS G_CDS: 0.46 Total: -68.84 kcal Atomic # 8 Polarization: -18.54 SS G_CDS: -1.16 Total: -19.70 kcal Atomic # 14 Polarization: 25.38 SS G_CDS: -4.64 Total: 20.75 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -36.74 -8.58 -45.33 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001130835036.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.704 kcal (2) G-P(sol) polarization free energy of solvation -36.744 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.960 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.581 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.325 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.379 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds