Wall clock time and date at job start Tue Mar 31 2020 23:20:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42901 * 114.00065 * 2 1 4 4 H 1.09004 * 109.46929 * 330.00433 * 3 2 1 5 5 C 1.52998 * 109.47249 * 90.00041 * 3 2 1 6 6 C 1.50695 * 109.47146 * 210.00750 * 3 2 1 7 7 O 1.21280 * 120.00098 * 359.97438 * 6 3 2 8 8 N 1.34780 * 120.00042 * 180.02562 * 6 3 2 9 9 C 1.46500 * 119.99991 * 179.97438 * 8 6 3 10 10 C 1.50700 * 109.46999 * 179.97438 * 9 8 6 11 11 N 1.30837 * 125.96173 * 275.00190 * 10 9 8 12 12 C 1.33241 * 109.83253 * 179.97438 * 11 10 9 13 13 C 1.50698 * 125.53011 * 179.97438 * 12 11 10 14 14 H 1.08995 * 109.70579 * 345.54001 * 13 12 11 15 15 C 1.53712 * 109.74465 * 106.30270 * 13 12 11 16 16 O 1.42963 * 109.14397 * 172.16420 * 15 13 12 17 17 C 1.42963 * 114.17116 * 297.28736 * 16 15 13 18 18 C 1.53300 * 109.21856 * 62.58186 * 17 16 15 19 19 N 1.47149 * 109.68366 * 224.99907 * 13 12 11 20 20 C 1.36944 * 120.97776 * 9.76370 * 19 13 12 21 21 H 1.07998 * 120.00348 * 326.80429 * 20 19 13 22 22 C 1.38809 * 119.99792 * 146.81681 * 20 19 13 23 23 N 1.31614 * 120.00347 * 145.62045 * 22 20 19 24 24 Si 1.86805 * 120.00005 * 325.62000 * 22 20 19 25 25 H 1.48495 * 109.47070 * 270.00514 * 24 22 20 26 26 H 1.48504 * 109.46767 * 30.00008 * 24 22 20 27 27 H 1.48497 * 109.47180 * 150.00123 * 24 22 20 28 28 N 1.30723 * 108.94065 * 0.25813 * 12 11 10 29 29 N 1.34427 * 125.96268 * 94.96920 * 10 9 8 30 30 H 0.96997 * 126.82425 * 0.03289 * 29 10 9 31 31 H 1.08993 * 109.47413 * 59.99966 * 1 2 3 32 32 H 1.09000 * 109.47076 * 179.97438 * 1 2 3 33 33 H 1.09002 * 109.46723 * 299.99663 * 1 2 3 34 34 H 1.09004 * 109.46834 * 60.00334 * 5 3 2 35 35 H 1.08998 * 109.47434 * 179.97438 * 5 3 2 36 36 H 1.09002 * 109.47241 * 300.00533 * 5 3 2 37 37 H 0.97005 * 119.99846 * 359.97438 * 8 6 3 38 38 H 1.09003 * 109.47399 * 59.99737 * 9 8 6 39 39 H 1.08995 * 109.47162 * 299.99365 * 9 8 6 40 40 H 1.09002 * 109.65491 * 52.20087 * 15 13 12 41 41 H 1.09001 * 109.48699 * 292.02709 * 15 13 12 42 42 H 1.09001 * 109.51548 * 302.66334 * 17 16 15 43 43 H 1.08994 * 109.51359 * 182.50178 * 17 16 15 44 44 H 1.08991 * 109.68303 * 187.97408 * 18 17 16 45 45 H 1.09005 * 109.68159 * 67.42061 * 18 17 16 46 46 H 0.96995 * 119.99991 * 359.46103 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 1 1.3449 1.9994 -0.5138 5 6 2.2177 1.7714 1.4425 6 6 3.3385 1.2639 -0.7105 7 8 3.7475 0.2192 -1.1712 8 7 4.0726 2.3876 -0.8333 9 6 5.3642 2.3471 -1.5235 10 6 5.9771 3.7238 -1.5236 11 7 5.7348 4.6726 -2.3913 12 6 6.4488 5.7559 -2.0878 13 6 6.4401 7.0535 -2.8540 14 1 5.9715 6.9029 -3.8265 15 6 5.6663 8.1193 -2.0616 16 8 5.8196 9.3861 -2.7062 17 6 7.1675 9.8605 -2.7514 18 6 8.0182 8.8859 -3.5739 19 7 7.8202 7.5302 -3.0372 20 6 8.8887 6.7334 -2.7229 21 1 8.8194 6.0367 -1.9006 22 6 10.0609 6.8214 -3.4611 23 7 11.2247 6.6491 -2.8710 24 14 9.9867 7.1843 -5.2920 25 1 9.9004 5.9082 -6.0464 26 1 8.7901 8.0139 -5.5840 27 1 11.2105 7.9193 -5.7009 28 7 7.1627 5.5083 -1.0211 29 7 6.8676 4.1916 -0.6319 30 1 7.2361 3.7134 0.1273 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3633 -1.0277 -0.0005 33 1 -0.3633 0.5138 0.8900 34 1 2.8831 1.0775 1.9563 35 1 2.6615 2.7669 1.4425 36 1 1.2569 1.8014 1.9564 37 1 3.7457 3.2232 -0.4645 38 1 5.2166 2.0154 -2.5513 39 1 6.0292 1.6531 -1.0096 40 1 6.0582 8.1776 -1.0461 41 1 4.6099 7.8527 -2.0293 42 1 7.5649 9.9252 -1.7385 43 1 7.1911 10.8461 -3.2163 44 1 9.0699 9.1613 -3.4967 45 1 7.7058 8.9167 -4.6178 46 1 11.2637 6.4684 -1.9189 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001130835036.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:20:31 Heat of formation + Delta-G solvation = -21.107032 kcal Electronic energy + Delta-G solvation = -29932.629752 eV Core-core repulsion = 25667.097448 eV Total energy + Delta-G solvation = -4265.532304 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -43.33232 -41.08379 -40.09816 -38.64254 -36.68296 -36.15724 -34.45729 -33.38996 -33.26156 -32.44471 -31.28794 -28.76798 -28.18781 -27.67900 -25.65376 -24.86539 -24.66537 -23.13365 -21.94667 -21.59536 -21.05709 -19.64857 -19.04574 -18.41148 -18.05783 -17.47588 -17.17305 -17.04138 -16.56779 -16.28927 -16.07574 -15.98547 -15.82207 -15.70740 -15.49785 -15.27656 -14.79595 -14.39690 -14.33614 -14.25755 -13.97252 -13.60646 -13.46640 -13.34051 -13.01917 -12.87549 -12.74478 -12.53537 -12.36212 -12.12563 -11.71519 -11.58534 -11.42881 -11.22862 -11.16274 -11.09218 -10.98378 -10.69940 -10.49776 -10.36616 -10.07159 -9.04436 -8.43983 -5.46001 0.39520 1.43101 1.45030 1.49242 1.54319 1.62098 1.73083 2.01639 2.58191 2.66126 2.86028 2.99893 3.07497 3.32279 3.55151 3.60519 3.72325 3.91394 4.02327 4.04076 4.16544 4.31463 4.37420 4.44061 4.46431 4.47246 4.54724 4.56541 4.66352 4.72464 4.79690 4.88427 4.88647 4.95777 5.06094 5.14780 5.17124 5.19127 5.25963 6.00142 6.03411 6.14652 6.17573 6.29223 6.35839 6.92680 7.02268 7.04135 7.55649 8.13755 8.83878 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.017231 B = 0.002627 C = 0.002435 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1624.560423 B =10654.496141 C =11497.653968 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.396 6.396 3 C 0.072 3.928 4 H 0.117 0.883 5 C -0.166 4.166 6 C 0.518 3.482 7 O -0.565 6.565 8 N -0.707 5.707 9 C 0.215 3.785 10 C 0.265 3.735 11 N -0.536 5.536 12 C 0.237 3.763 13 C 0.216 3.784 14 H 0.064 0.936 15 C 0.073 3.927 16 O -0.385 6.385 17 C 0.050 3.950 18 C 0.104 3.896 19 N -0.608 5.608 20 C -0.344 4.344 21 H 0.071 0.929 22 C -0.050 4.050 23 N -0.939 5.939 24 Si 1.058 2.942 25 H -0.306 1.306 26 H -0.235 1.235 27 H -0.298 1.298 28 N -0.290 5.290 29 N -0.467 5.467 30 H 0.452 0.548 31 H 0.053 0.947 32 H 0.095 0.905 33 H 0.064 0.936 34 H 0.058 0.942 35 H 0.089 0.911 36 H 0.088 0.912 37 H 0.417 0.583 38 H 0.101 0.899 39 H 0.109 0.891 40 H 0.043 0.957 41 H 0.117 0.883 42 H 0.043 0.957 43 H 0.124 0.876 44 H 0.062 0.938 45 H 0.049 0.951 46 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.685 -5.125 8.745 24.846 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.314 6.314 3 C 0.011 3.989 4 H 0.135 0.865 5 C -0.224 4.224 6 C 0.305 3.695 7 O -0.442 6.442 8 N -0.364 5.364 9 C 0.088 3.912 10 C -0.015 4.015 11 N -0.266 5.266 12 C -0.045 4.045 13 C 0.108 3.892 14 H 0.081 0.919 15 C -0.006 4.006 16 O -0.303 6.303 17 C -0.028 4.028 18 C -0.020 4.020 19 N -0.336 5.336 20 C -0.473 4.473 21 H 0.088 0.912 22 C -0.248 4.248 23 N -0.579 5.579 24 Si 0.885 3.115 25 H -0.235 1.235 26 H -0.159 1.159 27 H -0.225 1.225 28 N -0.119 5.119 29 N -0.188 5.188 30 H 0.300 0.700 31 H 0.072 0.928 32 H 0.113 0.887 33 H 0.082 0.918 34 H 0.077 0.923 35 H 0.108 0.892 36 H 0.107 0.893 37 H 0.254 0.746 38 H 0.119 0.881 39 H 0.127 0.873 40 H 0.061 0.939 41 H 0.135 0.865 42 H 0.061 0.939 43 H 0.142 0.858 44 H 0.080 0.920 45 H 0.066 0.934 46 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -21.271 -5.207 7.025 22.998 hybrid contribution 0.150 -0.728 1.997 2.131 sum -21.121 -5.935 9.022 23.722 Atomic orbital electron populations 1.23091 0.78567 1.04193 1.01503 1.88002 1.21962 1.26296 1.95165 1.22042 0.91817 0.87182 0.97877 0.86522 1.22248 1.04485 1.02343 0.93332 1.20991 0.86735 0.82738 0.79078 1.90737 1.72325 1.31849 1.49283 1.45686 1.19765 1.12244 1.58658 1.19538 0.84894 0.85825 1.00898 1.24272 0.92030 0.97148 0.88008 1.70251 1.28715 1.00011 1.27661 1.23854 0.91927 0.96036 0.92708 1.19777 0.87907 0.86055 0.95506 0.91886 1.22914 1.00637 0.82883 0.94198 1.87841 1.27447 1.35144 1.79834 1.23165 0.81980 0.97986 0.99687 1.22181 0.99244 0.83968 0.96641 1.44440 1.00254 1.11768 1.77092 1.20526 0.92305 1.22132 1.12336 0.91202 1.27124 0.91556 0.98721 1.07354 1.71049 1.26047 1.48906 1.11947 0.84020 0.76787 0.76774 0.73942 1.23480 1.15938 1.22517 1.78299 1.20957 0.94552 1.18098 1.48123 1.34062 1.11189 1.25419 0.70022 0.92838 0.88683 0.91782 0.92324 0.89238 0.89296 0.74632 0.88137 0.87283 0.93874 0.86471 0.93870 0.85791 0.91993 0.93363 0.94113 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.22 10.82 113.37 1.23 1.45 16 2 O -0.40 -7.41 9.88 -129.94 -1.28 -8.69 16 3 C 0.07 0.99 3.14 29.85 0.09 1.08 16 4 H 0.12 0.97 7.79 -2.38 -0.02 0.95 16 5 C -0.17 -1.47 9.42 71.98 0.68 -0.79 16 6 C 0.52 10.42 7.23 87.65 0.63 11.05 16 7 O -0.56 -16.94 16.50 16.01 0.26 -16.68 16 8 N -0.71 -11.52 5.44 -466.79 -2.54 -14.06 16 9 C 0.21 4.37 6.30 85.63 0.54 4.91 16 10 C 0.26 7.18 7.61 138.23 1.05 8.23 16 11 N -0.54 -18.52 11.19 -179.72 -2.01 -20.53 16 12 C 0.24 9.36 6.14 138.63 0.85 10.21 16 13 C 0.22 8.68 3.64 44.36 0.16 8.84 16 14 H 0.06 2.57 8.14 -2.39 -0.02 2.55 16 15 C 0.07 2.44 6.29 72.22 0.45 2.89 16 16 O -0.38 -13.02 10.74 -148.98 -1.60 -14.62 16 17 C 0.05 1.66 6.99 72.08 0.50 2.16 16 18 C 0.10 4.28 4.63 86.36 0.40 4.68 16 19 N -0.61 -28.41 2.66 -677.10 -1.80 -30.21 16 20 C -0.34 -18.96 8.82 84.03 0.74 -18.21 16 21 H 0.07 4.14 5.17 -2.91 -0.02 4.12 16 22 C -0.05 -2.87 4.85 84.86 0.41 -2.46 16 23 N -0.94 -58.89 13.71 21.65 0.30 -58.59 16 24 Si 1.06 51.79 27.28 68.60 1.87 53.67 16 25 H -0.31 -15.29 7.11 99.48 0.71 -14.58 16 26 H -0.24 -10.11 4.74 99.48 0.47 -9.64 16 27 H -0.30 -14.71 7.11 99.48 0.71 -14.01 16 28 N -0.29 -11.49 10.05 -51.33 -0.52 -12.01 16 29 N -0.47 -13.37 7.45 -50.71 -0.38 -13.75 16 30 H 0.45 9.52 8.96 -213.10 -1.91 7.61 16 31 H 0.05 0.44 8.08 -2.39 -0.02 0.42 16 32 H 0.09 0.84 8.14 -2.39 -0.02 0.82 16 33 H 0.06 0.37 7.87 -2.39 -0.02 0.35 16 34 H 0.06 0.70 8.14 -2.38 -0.02 0.68 16 35 H 0.09 0.48 7.56 -2.39 -0.02 0.46 16 36 H 0.09 0.51 7.87 -2.39 -0.02 0.49 16 37 H 0.42 5.00 7.88 -92.70 -0.73 4.26 16 38 H 0.10 2.28 8.14 -2.39 -0.02 2.26 16 39 H 0.11 1.91 8.14 -2.39 -0.02 1.89 16 40 H 0.04 1.52 8.14 -2.39 -0.02 1.50 16 41 H 0.12 3.19 8.14 -2.39 -0.02 3.17 16 42 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 43 H 0.12 3.23 8.14 -2.39 -0.02 3.21 16 44 H 0.06 2.74 6.50 -2.39 -0.02 2.72 16 45 H 0.05 1.93 6.36 -2.38 -0.02 1.91 16 46 H 0.25 15.86 8.73 -92.71 -0.81 15.05 16 Total: -1.00 -81.90 375.78 -1.83 -83.73 By element: Atomic # 1 Polarization: 19.57 SS G_CDS: -1.88 Total: 17.69 kcal Atomic # 6 Polarization: 26.30 SS G_CDS: 7.75 Total: 34.05 kcal Atomic # 7 Polarization: -142.20 SS G_CDS: -6.95 Total: -149.15 kcal Atomic # 8 Polarization: -37.37 SS G_CDS: -2.62 Total: -39.99 kcal Atomic # 14 Polarization: 51.79 SS G_CDS: 1.87 Total: 53.67 kcal Total: -81.90 -1.83 -83.73 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001130835036.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.624 kcal (2) G-P(sol) polarization free energy of solvation -81.900 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.275 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.832 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.731 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.107 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds