Wall clock time and date at job start Tue Mar 31 2020 23:20:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42891 * 114.00475 * 2 1 4 4 H 1.09003 * 109.47336 * 30.00022 * 3 2 1 5 5 C 1.52995 * 109.47445 * 269.99798 * 3 2 1 6 6 C 1.50706 * 109.47259 * 149.99732 * 3 2 1 7 7 O 1.21271 * 119.99941 * 5.00151 * 6 3 2 8 8 N 1.34779 * 119.99878 * 185.00346 * 6 3 2 9 9 C 1.46503 * 119.99601 * 180.02562 * 8 6 3 10 10 C 1.50707 * 109.46650 * 179.97438 * 9 8 6 11 11 N 1.30828 * 125.95913 * 275.26626 * 10 9 8 12 12 C 1.33247 * 109.82801 * 180.19868 * 11 10 9 13 13 C 1.50699 * 125.52929 * 179.85815 * 12 11 10 14 14 H 1.08996 * 109.70736 * 15.25104 * 13 12 11 15 15 C 1.53293 * 109.67945 * 254.71667 * 13 12 11 16 16 O 1.42961 * 109.26436 * 187.99751 * 15 13 12 17 17 C 1.42962 * 114.16583 * 62.55303 * 16 15 13 18 18 C 1.53298 * 109.22626 * 297.42064 * 17 16 15 19 19 N 1.47149 * 108.38158 * 52.29805 * 18 17 16 20 20 C 1.36941 * 120.97907 * 129.47950 * 19 18 17 21 21 H 1.08002 * 120.00070 * 308.82483 * 20 19 18 22 22 C 1.38811 * 119.99938 * 128.83266 * 20 19 18 23 23 N 1.31620 * 120.00461 * 158.89581 * 22 20 19 24 24 Si 1.86798 * 119.99842 * 338.88912 * 22 20 19 25 25 H 1.48501 * 109.47240 * 94.59981 * 24 22 20 26 26 H 1.48508 * 109.47096 * 214.59731 * 24 22 20 27 27 H 1.48500 * 109.47463 * 334.59659 * 24 22 20 28 28 N 1.30719 * 108.94527 * 359.58812 * 12 11 10 29 29 N 1.34428 * 125.96232 * 95.02390 * 10 9 8 30 30 H 0.97009 * 126.82145 * 359.92672 * 29 10 9 31 31 H 1.08995 * 109.47239 * 300.00545 * 1 2 3 32 32 H 1.09007 * 109.46710 * 60.00046 * 1 2 3 33 33 H 1.08995 * 109.47892 * 179.97438 * 1 2 3 34 34 H 1.08996 * 109.47770 * 179.97438 * 5 3 2 35 35 H 1.09003 * 109.47277 * 299.99912 * 5 3 2 36 36 H 1.09006 * 109.46918 * 59.99657 * 5 3 2 37 37 H 0.96998 * 119.99834 * 359.97438 * 8 6 3 38 38 H 1.08998 * 109.47078 * 59.99818 * 9 8 6 39 39 H 1.08996 * 109.46905 * 299.99486 * 9 8 6 40 40 H 1.09001 * 109.51401 * 68.04602 * 15 13 12 41 41 H 1.08995 * 109.51446 * 307.94543 * 15 13 12 42 42 H 1.09007 * 109.51254 * 57.34753 * 17 16 15 43 43 H 1.08999 * 109.51491 * 177.49295 * 17 16 15 44 44 H 1.08994 * 109.68079 * 172.02372 * 18 17 16 45 45 H 1.08997 * 109.67742 * 292.54481 * 18 17 16 46 46 H 0.96995 * 120.00711 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3053 0.0000 4 1 1.3451 1.9993 0.5138 5 6 2.2178 1.7713 -1.4424 6 6 3.3387 1.2637 0.7105 7 8 3.7896 0.2044 1.0915 8 7 4.0255 2.4038 0.9225 9 6 5.3171 2.3632 1.6127 10 6 5.8731 3.7598 1.7204 11 7 6.5688 4.3825 0.8040 12 6 6.9006 5.5983 1.2368 13 6 7.7044 6.6133 0.4655 14 1 7.7472 6.3267 -0.5852 15 6 9.1244 6.6902 1.0379 16 8 9.8203 7.7800 0.4283 17 6 9.2423 9.0617 0.6873 18 6 7.8287 9.1068 0.0958 19 7 7.0809 7.9404 0.5914 20 6 5.8408 8.0852 1.1540 21 1 5.6877 8.8034 1.9459 22 6 4.7807 7.3087 0.7066 23 7 3.7278 7.1268 1.4751 24 14 4.8484 6.5221 -0.9863 25 1 5.3632 5.1343 -0.8671 26 1 3.4851 6.4955 -1.5747 27 1 5.7506 7.3111 -1.8631 28 7 6.4109 5.7700 2.4365 29 7 5.7369 4.5847 2.7731 30 1 5.2661 4.3985 3.6005 31 1 -0.3633 0.5139 0.8899 32 1 -0.3633 0.5139 -0.8901 33 1 -0.3635 -1.0276 -0.0005 34 1 2.6608 2.7671 -1.4425 35 1 2.8831 1.0773 -1.9563 36 1 1.2569 1.8014 -1.9563 37 1 3.6649 3.2510 0.6175 38 1 6.0106 1.7388 1.0494 39 1 5.1826 1.9473 2.6112 40 1 9.6518 5.7593 0.8297 41 1 9.0746 6.8471 2.1154 42 1 9.1921 9.2277 1.7635 43 1 9.8545 9.8370 0.2268 44 1 7.3289 10.0234 0.4088 45 1 7.8848 9.0723 -0.9922 46 1 2.9869 6.5846 1.1624 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001130835037.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:20:36 Heat of formation + Delta-G solvation = 9.411149 kcal Electronic energy + Delta-G solvation = -31056.363731 eV Core-core repulsion = 26792.154795 eV Total energy + Delta-G solvation = -4264.208936 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -41.63276 -40.01005 -38.54172 -37.75175 -35.20905 -34.65354 -32.49079 -32.04287 -31.67735 -31.02685 -29.81215 -27.22363 -27.04528 -26.82219 -24.07673 -23.91592 -23.10358 -21.37751 -20.54319 -20.24205 -19.43404 -18.07538 -17.28709 -17.01723 -16.84234 -16.05674 -15.87008 -15.48804 -15.43913 -15.04798 -14.83925 -14.58960 -14.31839 -14.15244 -14.07254 -13.54684 -13.51270 -13.36187 -13.02730 -12.79824 -12.62494 -12.52427 -12.02292 -11.92267 -11.76651 -11.39091 -11.37161 -11.27817 -10.81188 -10.69908 -10.64131 -10.23974 -9.97735 -9.81762 -9.72258 -9.48929 -9.39740 -9.23988 -9.16116 -8.90461 -8.18777 -6.67013 -6.12053 -3.66232 2.01491 2.50125 2.84552 3.21282 3.32816 3.39347 3.49182 3.63326 3.87657 4.16297 4.36963 4.48989 4.51582 4.69270 4.76687 4.80881 5.05857 5.08445 5.12959 5.17165 5.25844 5.36628 5.44114 5.47522 5.54263 5.61586 5.70674 5.78248 5.86359 5.90705 5.95615 5.98005 6.18806 6.23560 6.37823 6.53061 6.72332 6.76841 6.89576 7.07483 7.34491 7.59079 7.64175 7.92431 8.07819 8.36005 8.73300 8.83137 9.56414 10.04516 10.99596 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.018779 B = 0.003436 C = 0.003205 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1490.690901 B = 8147.868626 C = 8734.461736 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.360 6.360 3 C 0.070 3.930 4 H 0.089 0.911 5 C -0.173 4.173 6 C 0.520 3.480 7 O -0.521 6.521 8 N -0.721 5.721 9 C 0.213 3.787 10 C 0.222 3.778 11 N -0.509 5.509 12 C 0.226 3.774 13 C 0.223 3.777 14 H 0.060 0.940 15 C 0.059 3.941 16 O -0.387 6.387 17 C 0.043 3.957 18 C 0.114 3.886 19 N -0.601 5.601 20 C -0.261 4.261 21 H 0.072 0.928 22 C 0.061 3.939 23 N -0.882 5.882 24 Si 0.825 3.175 25 H -0.231 1.231 26 H -0.304 1.304 27 H -0.271 1.271 28 N -0.202 5.202 29 N -0.468 5.468 30 H 0.433 0.567 31 H 0.044 0.956 32 H 0.044 0.956 33 H 0.090 0.910 34 H 0.074 0.926 35 H 0.073 0.927 36 H 0.070 0.930 37 H 0.408 0.592 38 H 0.102 0.898 39 H 0.088 0.912 40 H 0.087 0.913 41 H 0.054 0.946 42 H 0.049 0.951 43 H 0.086 0.914 44 H 0.075 0.925 45 H 0.031 0.969 46 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.610 -8.148 -0.739 8.339 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.278 6.278 3 C 0.009 3.991 4 H 0.107 0.893 5 C -0.230 4.230 6 C 0.305 3.695 7 O -0.396 6.396 8 N -0.377 5.377 9 C 0.087 3.913 10 C -0.057 4.057 11 N -0.238 5.238 12 C -0.056 4.056 13 C 0.115 3.885 14 H 0.078 0.922 15 C -0.020 4.020 16 O -0.305 6.305 17 C -0.035 4.035 18 C -0.011 4.011 19 N -0.329 5.329 20 C -0.390 4.390 21 H 0.090 0.910 22 C -0.142 4.142 23 N -0.521 5.521 24 Si 0.651 3.349 25 H -0.155 1.155 26 H -0.232 1.232 27 H -0.195 1.195 28 N -0.029 5.029 29 N -0.188 5.188 30 H 0.277 0.723 31 H 0.063 0.937 32 H 0.062 0.938 33 H 0.109 0.891 34 H 0.093 0.907 35 H 0.092 0.908 36 H 0.089 0.911 37 H 0.243 0.757 38 H 0.120 0.880 39 H 0.106 0.894 40 H 0.106 0.894 41 H 0.072 0.928 42 H 0.067 0.933 43 H 0.104 0.896 44 H 0.093 0.907 45 H 0.049 0.951 46 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -0.957 -8.655 -0.483 8.721 hybrid contribution -1.471 0.179 -0.526 1.573 sum -2.428 -8.476 -1.010 8.875 Atomic orbital electron populations 1.22888 0.80596 1.03173 1.00192 1.88029 1.19671 1.25107 1.94963 1.21907 0.93354 0.86876 0.96963 0.89327 1.22248 1.03578 1.02411 0.94795 1.20316 0.86178 0.83661 0.79357 1.90714 1.69298 1.29511 1.50093 1.45936 1.21223 1.10179 1.60313 1.19456 0.84595 0.88395 0.98864 1.23650 1.00188 0.94966 0.86855 1.70304 1.17743 1.07258 1.28545 1.23434 0.99273 0.91453 0.91430 1.19735 0.89721 0.83632 0.95457 0.92206 1.22948 0.92484 0.89655 0.96923 1.87836 1.52463 1.15109 1.75115 1.23095 0.95698 0.84834 0.99859 1.21761 0.91050 0.91826 0.96504 1.44250 1.17463 0.99628 1.71510 1.18466 0.82750 1.23745 1.14006 0.91045 1.25709 0.94908 0.97212 0.96350 1.69959 1.08005 1.38960 1.35141 0.87615 0.76484 0.83139 0.87625 1.15528 1.23162 1.19527 1.78450 1.09833 0.97864 1.16764 1.48187 1.43244 1.10929 1.16448 0.72267 0.93747 0.93766 0.89141 0.90702 0.90834 0.91054 0.75722 0.88039 0.89367 0.89444 0.92760 0.93274 0.89576 0.90664 0.95060 0.93502 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 10.82 101.05 1.09 1.33 16 2 O -0.36 -4.62 9.88 -55.09 -0.54 -5.17 16 3 C 0.07 0.84 3.13 -27.88 -0.09 0.75 16 4 H 0.09 0.87 7.79 -51.93 -0.40 0.47 16 5 C -0.17 -1.86 9.48 37.15 0.35 -1.51 16 6 C 0.52 7.46 7.18 -10.98 -0.08 7.38 16 7 O -0.52 -9.16 16.51 -14.30 -0.24 -9.40 16 8 N -0.72 -9.96 5.51 -61.47 -0.34 -10.30 16 9 C 0.21 2.92 6.30 -5.19 -0.03 2.88 16 10 C 0.22 3.77 7.61 -155.70 -1.18 2.59 16 11 N -0.51 -10.28 9.01 -8.16 -0.07 -10.35 16 12 C 0.23 4.91 3.83 -156.84 -0.60 4.31 16 13 C 0.22 4.84 2.42 -68.57 -0.17 4.67 16 14 H 0.06 1.37 7.29 -51.93 -0.38 0.99 16 15 C 0.06 1.11 6.27 37.31 0.23 1.35 16 16 O -0.39 -7.17 10.74 -35.23 -0.38 -7.55 16 17 C 0.04 0.73 6.98 37.31 0.26 0.99 16 18 C 0.11 2.23 6.74 -3.53 -0.02 2.21 16 19 N -0.60 -13.96 2.32 -165.61 -0.38 -14.34 16 20 C -0.26 -6.90 8.16 -15.06 -0.12 -7.02 16 21 H 0.07 2.10 8.06 -52.49 -0.42 1.68 16 22 C 0.06 1.63 3.72 -17.43 -0.06 1.56 16 23 N -0.88 -24.09 13.97 55.49 0.78 -23.32 16 24 Si 0.83 20.34 24.87 -169.99 -4.23 16.11 16 25 H -0.23 -5.44 5.17 56.52 0.29 -5.15 16 26 H -0.30 -7.64 7.11 56.52 0.40 -7.24 16 27 H -0.27 -6.99 7.11 56.52 0.40 -6.59 16 28 N -0.20 -4.40 10.63 32.42 0.34 -4.06 16 29 N -0.47 -8.22 7.45 32.62 0.24 -7.97 16 30 H 0.43 6.20 8.96 -182.33 -1.63 4.57 16 31 H 0.04 0.34 8.08 -51.93 -0.42 -0.08 16 32 H 0.04 0.32 7.87 -51.93 -0.41 -0.09 16 33 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.07 0.83 7.92 -51.93 -0.41 0.42 16 35 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 36 H 0.07 0.64 7.87 -51.93 -0.41 0.23 16 37 H 0.41 5.82 8.25 -40.82 -0.34 5.49 16 38 H 0.10 1.39 8.14 -51.93 -0.42 0.97 16 39 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 40 H 0.09 1.46 8.14 -51.93 -0.42 1.04 16 41 H 0.05 1.04 8.13 -51.93 -0.42 0.62 16 42 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 43 H 0.09 1.18 8.14 -51.93 -0.42 0.76 16 44 H 0.07 1.42 7.96 -51.93 -0.41 1.01 16 45 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 46 H 0.26 6.69 8.31 -40.82 -0.34 6.35 16 LS Contribution 374.56 15.07 5.64 5.64 Total: -1.00 -34.05 374.56 -7.88 -41.93 By element: Atomic # 1 Polarization: 15.57 SS G_CDS: -8.29 Total: 7.28 kcal Atomic # 6 Polarization: 21.92 SS G_CDS: -0.42 Total: 21.50 kcal Atomic # 7 Polarization: -70.92 SS G_CDS: 0.57 Total: -70.35 kcal Atomic # 8 Polarization: -20.96 SS G_CDS: -1.16 Total: -22.12 kcal Atomic # 14 Polarization: 20.34 SS G_CDS: -4.23 Total: 16.11 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -34.05 -7.88 -41.93 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001130835037.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.345 kcal (2) G-P(sol) polarization free energy of solvation -34.049 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.296 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.884 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.933 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.411 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds