Wall clock time and date at job start Tue Mar 31 2020 23:20:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42891 * 114.00475 * 2 1 4 4 H 1.09003 * 109.47336 * 30.00022 * 3 2 1 5 5 C 1.52995 * 109.47445 * 269.99798 * 3 2 1 6 6 C 1.50706 * 109.47259 * 149.99732 * 3 2 1 7 7 O 1.21271 * 119.99941 * 5.00151 * 6 3 2 8 8 N 1.34779 * 119.99878 * 185.00346 * 6 3 2 9 9 C 1.46503 * 119.99601 * 180.02562 * 8 6 3 10 10 C 1.50707 * 109.46650 * 179.97438 * 9 8 6 11 11 N 1.30828 * 125.95913 * 275.26626 * 10 9 8 12 12 C 1.33247 * 109.82801 * 180.19868 * 11 10 9 13 13 C 1.50699 * 125.52929 * 179.85815 * 12 11 10 14 14 H 1.08996 * 109.70736 * 15.25104 * 13 12 11 15 15 C 1.53293 * 109.67945 * 254.71667 * 13 12 11 16 16 O 1.42961 * 109.26436 * 187.99751 * 15 13 12 17 17 C 1.42962 * 114.16583 * 62.55303 * 16 15 13 18 18 C 1.53298 * 109.22626 * 297.42064 * 17 16 15 19 19 N 1.47149 * 108.38158 * 52.29805 * 18 17 16 20 20 C 1.36941 * 120.97907 * 129.47950 * 19 18 17 21 21 H 1.08002 * 120.00070 * 308.82483 * 20 19 18 22 22 C 1.38811 * 119.99938 * 128.83266 * 20 19 18 23 23 N 1.31620 * 120.00461 * 158.89581 * 22 20 19 24 24 Si 1.86798 * 119.99842 * 338.88912 * 22 20 19 25 25 H 1.48501 * 109.47240 * 94.59981 * 24 22 20 26 26 H 1.48508 * 109.47096 * 214.59731 * 24 22 20 27 27 H 1.48500 * 109.47463 * 334.59659 * 24 22 20 28 28 N 1.30719 * 108.94527 * 359.58812 * 12 11 10 29 29 N 1.34428 * 125.96232 * 95.02390 * 10 9 8 30 30 H 0.97009 * 126.82145 * 359.92672 * 29 10 9 31 31 H 1.08995 * 109.47239 * 300.00545 * 1 2 3 32 32 H 1.09007 * 109.46710 * 60.00046 * 1 2 3 33 33 H 1.08995 * 109.47892 * 179.97438 * 1 2 3 34 34 H 1.08996 * 109.47770 * 179.97438 * 5 3 2 35 35 H 1.09003 * 109.47277 * 299.99912 * 5 3 2 36 36 H 1.09006 * 109.46918 * 59.99657 * 5 3 2 37 37 H 0.96998 * 119.99834 * 359.97438 * 8 6 3 38 38 H 1.08998 * 109.47078 * 59.99818 * 9 8 6 39 39 H 1.08996 * 109.46905 * 299.99486 * 9 8 6 40 40 H 1.09001 * 109.51401 * 68.04602 * 15 13 12 41 41 H 1.08995 * 109.51446 * 307.94543 * 15 13 12 42 42 H 1.09007 * 109.51254 * 57.34753 * 17 16 15 43 43 H 1.08999 * 109.51491 * 177.49295 * 17 16 15 44 44 H 1.08994 * 109.68079 * 172.02372 * 18 17 16 45 45 H 1.08997 * 109.67742 * 292.54481 * 18 17 16 46 46 H 0.96995 * 120.00711 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3053 0.0000 4 1 1.3451 1.9993 0.5138 5 6 2.2178 1.7713 -1.4424 6 6 3.3387 1.2637 0.7105 7 8 3.7896 0.2044 1.0915 8 7 4.0255 2.4038 0.9225 9 6 5.3171 2.3632 1.6127 10 6 5.8731 3.7598 1.7204 11 7 6.5688 4.3825 0.8040 12 6 6.9006 5.5983 1.2368 13 6 7.7044 6.6133 0.4655 14 1 7.7472 6.3267 -0.5852 15 6 9.1244 6.6902 1.0379 16 8 9.8203 7.7800 0.4283 17 6 9.2423 9.0617 0.6873 18 6 7.8287 9.1068 0.0958 19 7 7.0809 7.9404 0.5914 20 6 5.8408 8.0852 1.1540 21 1 5.6877 8.8034 1.9459 22 6 4.7807 7.3087 0.7066 23 7 3.7278 7.1268 1.4751 24 14 4.8484 6.5221 -0.9863 25 1 5.3632 5.1343 -0.8671 26 1 3.4851 6.4955 -1.5747 27 1 5.7506 7.3111 -1.8631 28 7 6.4109 5.7700 2.4365 29 7 5.7369 4.5847 2.7731 30 1 5.2661 4.3985 3.6005 31 1 -0.3633 0.5139 0.8899 32 1 -0.3633 0.5139 -0.8901 33 1 -0.3635 -1.0276 -0.0005 34 1 2.6608 2.7671 -1.4425 35 1 2.8831 1.0773 -1.9563 36 1 1.2569 1.8014 -1.9563 37 1 3.6649 3.2510 0.6175 38 1 6.0106 1.7388 1.0494 39 1 5.1826 1.9473 2.6112 40 1 9.6518 5.7593 0.8297 41 1 9.0746 6.8471 2.1154 42 1 9.1921 9.2277 1.7635 43 1 9.8545 9.8370 0.2268 44 1 7.3289 10.0234 0.4088 45 1 7.8848 9.0723 -0.9922 46 1 2.9869 6.5846 1.1624 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001130835037.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:20:35 Heat of formation + Delta-G solvation = -17.522009 kcal Electronic energy + Delta-G solvation = -31057.531640 eV Core-core repulsion = 26792.154795 eV Total energy + Delta-G solvation = -4265.376846 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -43.14073 -41.10380 -40.07292 -38.68235 -36.69043 -36.06911 -34.04866 -33.58437 -33.15026 -32.39312 -31.20970 -28.96173 -28.10341 -27.71727 -25.63648 -24.92776 -24.84669 -22.84138 -21.74146 -21.58625 -21.14505 -19.35439 -18.74853 -18.35883 -18.06829 -17.51897 -17.13023 -16.99379 -16.55205 -16.13838 -16.09614 -15.96578 -15.92444 -15.64844 -15.58058 -15.20390 -14.66956 -14.54988 -14.42320 -14.13026 -13.65106 -13.58914 -13.43926 -13.40916 -12.98490 -12.85965 -12.80001 -12.68242 -12.39662 -12.32962 -12.18638 -11.82301 -11.48480 -11.23517 -11.08930 -10.97476 -10.86282 -10.62858 -10.52221 -10.36526 -9.99679 -8.50378 -8.17099 -5.69518 0.63267 1.36248 1.39897 1.44041 1.50168 1.65624 1.84181 2.13714 2.46771 2.75596 2.89815 2.95266 3.11226 3.33261 3.51070 3.74237 3.81751 3.85002 3.94458 4.08900 4.14885 4.36275 4.40826 4.43488 4.46492 4.49903 4.51832 4.55578 4.58244 4.70644 4.74545 4.83563 4.90869 4.97120 5.05087 5.08658 5.18010 5.38489 5.49922 5.93740 5.95468 6.19270 6.23940 6.28320 6.30695 6.91712 6.96617 7.24419 7.55163 8.09926 8.97861 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.018779 B = 0.003436 C = 0.003205 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1490.690901 B = 8147.868626 C = 8734.461736 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.389 6.389 3 C 0.071 3.929 4 H 0.111 0.889 5 C -0.169 4.169 6 C 0.521 3.479 7 O -0.557 6.557 8 N -0.717 5.717 9 C 0.215 3.785 10 C 0.243 3.757 11 N -0.534 5.534 12 C 0.219 3.781 13 C 0.217 3.783 14 H 0.048 0.952 15 C 0.070 3.930 16 O -0.389 6.389 17 C 0.050 3.950 18 C 0.106 3.894 19 N -0.614 5.614 20 C -0.255 4.255 21 H 0.032 0.968 22 C 0.038 3.962 23 N -0.908 5.908 24 Si 0.873 3.127 25 H -0.216 1.216 26 H -0.309 1.309 27 H -0.289 1.289 28 N -0.240 5.240 29 N -0.459 5.459 30 H 0.447 0.553 31 H 0.053 0.947 32 H 0.059 0.941 33 H 0.101 0.899 34 H 0.070 0.930 35 H 0.063 0.937 36 H 0.091 0.909 37 H 0.407 0.593 38 H 0.106 0.894 39 H 0.114 0.886 40 H 0.109 0.891 41 H 0.048 0.952 42 H 0.048 0.952 43 H 0.125 0.875 44 H 0.076 0.924 45 H 0.032 0.968 46 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.564 -8.970 -1.217 9.186 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.307 6.307 3 C 0.010 3.990 4 H 0.129 0.871 5 C -0.227 4.227 6 C 0.308 3.692 7 O -0.434 6.434 8 N -0.372 5.372 9 C 0.089 3.911 10 C -0.035 4.035 11 N -0.265 5.265 12 C -0.064 4.064 13 C 0.109 3.891 14 H 0.065 0.935 15 C -0.010 4.010 16 O -0.308 6.308 17 C -0.027 4.027 18 C -0.018 4.018 19 N -0.341 5.341 20 C -0.384 4.384 21 H 0.050 0.950 22 C -0.163 4.163 23 N -0.548 5.548 24 Si 0.700 3.300 25 H -0.140 1.140 26 H -0.237 1.237 27 H -0.215 1.215 28 N -0.067 5.067 29 N -0.180 5.180 30 H 0.294 0.706 31 H 0.072 0.928 32 H 0.078 0.922 33 H 0.120 0.880 34 H 0.089 0.911 35 H 0.082 0.918 36 H 0.110 0.890 37 H 0.242 0.758 38 H 0.124 0.876 39 H 0.132 0.868 40 H 0.127 0.873 41 H 0.067 0.933 42 H 0.066 0.934 43 H 0.143 0.857 44 H 0.095 0.905 45 H 0.050 0.950 46 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -0.907 -9.464 -0.950 9.554 hybrid contribution -1.501 0.429 -0.320 1.594 sum -2.408 -9.035 -1.269 9.436 Atomic orbital electron populations 1.23121 0.78567 1.04413 1.01405 1.87992 1.21954 1.25620 1.95136 1.21965 0.92306 0.87308 0.97394 0.87119 1.22228 1.04513 1.01705 0.94206 1.20791 0.86818 0.82929 0.78683 1.90696 1.70334 1.30647 1.51732 1.45903 1.21049 1.10141 1.60070 1.19622 0.84693 0.86240 1.00513 1.24118 0.98261 0.95476 0.85669 1.70285 1.19219 1.07120 1.29828 1.23424 0.99483 0.91948 0.91519 1.19773 0.91368 0.82913 0.95024 0.93466 1.22856 0.90986 0.90813 0.96310 1.87841 1.52310 1.15526 1.75081 1.23152 0.94410 0.85162 1.00006 1.21937 0.92514 0.90740 0.96646 1.44367 1.17061 1.01207 1.71507 1.18140 0.84407 1.22862 1.13036 0.95046 1.25942 0.94717 0.97741 0.97933 1.70021 1.08605 1.40126 1.36069 0.86915 0.75447 0.83148 0.84535 1.13950 1.23739 1.21488 1.78337 1.11198 0.99905 1.17310 1.48046 1.42712 1.09990 1.17227 0.70625 0.92829 0.92200 0.88031 0.91096 0.91816 0.88975 0.75794 0.87619 0.86777 0.87303 0.93321 0.93356 0.85674 0.90544 0.94973 0.93338 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.31 10.82 113.37 1.23 1.54 16 2 O -0.39 -9.35 9.88 -129.99 -1.28 -10.64 16 3 C 0.07 1.57 3.13 29.85 0.09 1.66 16 4 H 0.11 1.91 7.79 -2.39 -0.02 1.89 16 5 C -0.17 -3.33 9.48 71.98 0.68 -2.65 16 6 C 0.52 14.21 7.18 87.66 0.63 14.84 16 7 O -0.56 -19.00 16.51 15.99 0.26 -18.74 16 8 N -0.72 -18.59 5.51 -466.78 -2.57 -21.16 16 9 C 0.21 5.48 6.30 85.63 0.54 6.02 16 10 C 0.24 7.92 7.61 138.23 1.05 8.97 16 11 N -0.53 -20.97 9.01 -179.72 -1.62 -22.59 16 12 C 0.22 9.36 3.83 138.63 0.53 9.89 16 13 C 0.22 9.31 2.42 44.22 0.11 9.42 16 14 H 0.05 2.14 7.29 -2.39 -0.02 2.12 16 15 C 0.07 2.52 6.27 72.08 0.45 2.98 16 16 O -0.39 -13.63 10.74 -148.98 -1.60 -15.23 16 17 C 0.05 1.59 6.98 72.08 0.50 2.10 16 18 C 0.11 4.09 6.74 86.36 0.58 4.67 16 19 N -0.61 -28.50 2.32 -677.86 -1.57 -30.07 16 20 C -0.25 -13.69 8.16 84.03 0.69 -13.01 16 21 H 0.03 1.94 8.06 -2.91 -0.02 1.91 16 22 C 0.04 2.01 3.72 84.86 0.32 2.32 16 23 N -0.91 -49.77 13.97 21.65 0.30 -49.47 16 24 Si 0.87 42.26 24.87 68.60 1.71 43.97 16 25 H -0.22 -9.85 5.17 99.48 0.51 -9.34 16 26 H -0.31 -15.09 7.11 99.48 0.71 -14.38 16 27 H -0.29 -14.78 7.11 99.48 0.71 -14.07 16 28 N -0.24 -10.38 10.63 -51.33 -0.55 -10.92 16 29 N -0.46 -15.63 7.45 -50.70 -0.38 -16.01 16 30 H 0.45 12.26 8.96 -213.09 -1.91 10.35 16 31 H 0.05 0.70 8.08 -2.39 -0.02 0.68 16 32 H 0.06 0.70 7.87 -2.38 -0.02 0.68 16 33 H 0.10 1.26 8.14 -2.39 -0.02 1.24 16 34 H 0.07 1.45 7.92 -2.39 -0.02 1.43 16 35 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 36 H 0.09 1.41 7.87 -2.38 -0.02 1.40 16 37 H 0.41 10.92 8.25 -92.71 -0.76 10.16 16 38 H 0.11 2.69 8.14 -2.39 -0.02 2.67 16 39 H 0.11 2.36 8.14 -2.39 -0.02 2.34 16 40 H 0.11 3.44 8.14 -2.39 -0.02 3.42 16 41 H 0.05 1.82 8.13 -2.39 -0.02 1.80 16 42 H 0.05 1.56 8.14 -2.38 -0.02 1.54 16 43 H 0.13 3.02 8.14 -2.39 -0.02 3.00 16 44 H 0.08 2.88 7.96 -2.39 -0.02 2.86 16 45 H 0.03 1.24 8.14 -2.39 -0.02 1.22 16 46 H 0.26 13.42 8.31 -92.71 -0.77 12.64 16 Total: -1.00 -73.45 374.56 -1.75 -75.20 By element: Atomic # 1 Polarization: 28.76 SS G_CDS: -1.85 Total: 26.91 kcal Atomic # 6 Polarization: 41.35 SS G_CDS: 7.40 Total: 48.75 kcal Atomic # 7 Polarization: -143.84 SS G_CDS: -6.38 Total: -150.22 kcal Atomic # 8 Polarization: -41.99 SS G_CDS: -2.62 Total: -44.61 kcal Atomic # 14 Polarization: 42.26 SS G_CDS: 1.71 Total: 43.97 kcal Total: -73.45 -1.75 -75.20 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001130835037.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.679 kcal (2) G-P(sol) polarization free energy of solvation -73.454 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.775 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.747 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.201 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.522 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds