Wall clock time and date at job start Tue Mar 31 2020 22:24:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08998 * 109.45727 * 2 1 4 4 C 1.53041 * 109.45648 * 240.03168 * 2 1 3 5 5 C 1.53194 * 109.30969 * 178.62482 * 4 2 1 6 6 N 1.46925 * 108.77354 * 54.64165 * 5 4 2 7 7 C 1.34776 * 120.63081 * 126.36376 * 6 5 4 8 8 O 1.21290 * 119.99857 * 179.97438 * 7 6 5 9 9 C 1.50699 * 120.00321 * 359.97438 * 7 6 5 10 10 N 1.46498 * 109.47228 * 179.97438 * 9 7 6 11 11 C 1.36376 * 125.96148 * 90.00084 * 10 9 7 12 12 O 1.35635 * 125.98603 * 0.03536 * 11 10 9 13 13 N 1.30903 * 108.02454 * 180.29909 * 11 10 9 14 14 N 1.40115 * 107.93744 * 359.59281 * 13 11 10 15 15 C 1.30907 * 107.94219 * 0.41220 * 14 13 11 16 16 O 1.35631 * 125.99064 * 179.75527 * 15 14 13 17 17 C 1.46921 * 118.73609 * 306.64032 * 6 5 4 18 18 C 1.52760 * 109.01241 * 53.31003 * 17 6 5 19 19 H 1.08994 * 109.35645 * 65.49699 * 18 17 6 20 20 C 1.53002 * 109.59242 * 185.53907 * 18 17 6 21 21 N 1.46501 * 109.46862 * 294.98243 * 20 18 17 22 22 C 1.36934 * 119.99524 * 180.02562 * 21 20 18 23 23 H 1.07998 * 120.00836 * 359.97438 * 22 21 20 24 24 C 1.38814 * 119.99894 * 179.97438 * 22 21 20 25 25 N 1.31621 * 119.99969 * 0.02562 * 24 22 21 26 26 Si 1.86799 * 120.00352 * 179.97438 * 24 22 21 27 27 H 1.48499 * 109.47128 * 0.02562 * 26 24 22 28 28 H 1.48501 * 109.46867 * 120.00023 * 26 24 22 29 29 H 1.48497 * 109.47314 * 240.00209 * 26 24 22 30 30 H 1.09001 * 109.47495 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47303 * 299.97090 * 1 2 3 32 32 H 1.09000 * 109.47173 * 59.96519 * 1 2 3 33 33 H 1.09004 * 109.49989 * 58.67849 * 4 2 1 34 34 H 1.09000 * 109.52757 * 298.59772 * 4 2 1 35 35 H 1.08993 * 109.59411 * 294.84680 * 5 4 2 36 36 H 1.09004 * 109.58119 * 174.42022 * 5 4 2 37 37 H 1.09003 * 109.47006 * 59.99452 * 9 7 6 38 38 H 1.08997 * 109.47104 * 299.99778 * 9 7 6 39 39 H 0.96696 * 114.00091 * 90.00076 * 12 11 10 40 40 H 0.96702 * 113.99572 * 270.00159 * 16 15 14 41 41 H 1.09000 * 109.58704 * 173.15140 * 17 6 5 42 42 H 1.09004 * 109.58495 * 293.56752 * 17 6 5 43 43 H 1.08997 * 109.47391 * 54.98258 * 20 18 17 44 44 H 1.08997 * 109.46852 * 174.98347 * 20 18 17 45 45 H 0.97000 * 120.00146 * 359.97438 * 21 20 18 46 46 H 0.96996 * 120.00211 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8931 1.0277 0.0000 4 6 2.0398 -0.7208 -1.2501 5 6 3.5713 -0.6889 -1.2641 6 7 4.0676 -1.2494 0.0001 7 6 4.9609 -2.2586 0.0000 8 8 5.3632 -2.7123 1.0504 9 6 5.4598 -2.8233 -1.3050 10 7 6.4150 -3.9013 -1.0373 11 6 6.1109 -5.2225 -0.8902 12 8 4.8716 -5.7684 -0.9667 13 7 7.2239 -5.8707 -0.6565 14 7 8.2734 -4.9424 -0.6626 15 6 7.7633 -3.7586 -0.8910 16 8 8.4546 -2.5943 -0.9685 17 6 3.5668 -0.6929 1.2643 18 6 2.0395 -0.7210 1.2500 19 1 1.6973 -1.7557 1.2381 20 6 1.5019 -0.0195 2.4990 21 7 1.8906 -0.7780 3.6905 22 6 1.5185 -0.3389 4.9331 23 1 0.9389 0.5666 5.0348 24 6 1.8864 -1.0578 6.0621 25 7 2.5933 -2.1612 5.9384 26 14 1.3795 -0.4586 7.7572 27 1 0.5968 0.7964 7.6250 28 1 0.5458 -1.4939 8.4193 29 1 2.5924 -0.2024 8.5748 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3634 0.5134 0.8902 32 1 -0.3633 0.5144 -0.8897 33 1 1.6573 -0.2207 -2.1399 34 1 1.6975 -1.7556 -1.2390 35 1 3.9145 0.3405 -1.3672 36 1 3.9415 -1.2849 -2.0983 37 1 5.9514 -2.0364 -1.8771 38 1 4.6186 -3.2162 -1.8761 39 1 4.6193 -6.0481 -1.8573 40 1 8.5480 -2.1353 -0.1224 41 1 3.9342 -1.2914 2.0979 42 1 3.9096 0.3362 1.3717 43 1 1.9166 0.9868 2.5575 44 1 0.4148 0.0382 2.4436 45 1 2.4109 -1.5915 3.5992 46 1 2.8507 -2.6633 6.7273 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001133270505.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:24:08 Heat of formation + Delta-G solvation = -42.242553 kcal Electronic energy + Delta-G solvation = -30565.228722 eV Core-core repulsion = 26298.779913 eV Total energy + Delta-G solvation = -4266.448809 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -43.41699 -41.38704 -39.29590 -39.18505 -38.09129 -36.68061 -35.48818 -35.09798 -33.54585 -31.62411 -30.72860 -30.00879 -28.72285 -27.01902 -25.01245 -24.41381 -23.90912 -23.12693 -22.60132 -21.47118 -20.49770 -19.90583 -19.48024 -19.18818 -18.57359 -17.89736 -17.37297 -16.78229 -16.72731 -16.61317 -16.40286 -15.61071 -15.46306 -15.39091 -15.17738 -14.72684 -14.53267 -14.31697 -14.13290 -14.05523 -13.93828 -13.48224 -13.41263 -13.12198 -13.07853 -12.83102 -12.66979 -12.64041 -12.53335 -12.15774 -12.01138 -11.92987 -11.82655 -11.76706 -11.63424 -11.30612 -11.16698 -10.99124 -10.68949 -10.57722 -9.73944 -9.02997 -7.98094 -5.28343 0.32535 0.73523 1.10011 1.36472 1.42863 1.44576 1.54744 1.83612 2.18029 2.52548 2.79129 3.23882 3.35625 3.41812 3.67198 3.79782 3.84215 3.94540 4.05493 4.10592 4.17979 4.21441 4.28438 4.40047 4.58188 4.60296 4.63477 4.74011 4.78772 4.83484 4.95293 4.97096 5.08163 5.14501 5.18372 5.24795 5.29045 5.42523 5.46274 5.50863 5.59452 6.15216 6.22607 6.27291 6.41915 6.75162 6.97449 7.28231 8.05579 8.26408 9.25524 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.010448 B = 0.003307 C = 0.002763 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2679.173897 B = 8463.630184 C =10132.303007 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.079 4.079 3 H 0.085 0.915 4 C -0.124 4.124 5 C 0.095 3.905 6 N -0.597 5.597 7 C 0.486 3.514 8 O -0.586 6.586 9 C 0.090 3.910 10 N -0.495 5.495 11 C 0.427 3.573 12 O -0.436 6.436 13 N -0.342 5.342 14 N -0.338 5.338 15 C 0.424 3.576 16 O -0.431 6.431 17 C 0.128 3.872 18 C -0.088 4.088 19 H 0.048 0.952 20 C 0.155 3.845 21 N -0.749 5.749 22 C -0.243 4.243 23 H 0.080 0.920 24 C -0.079 4.079 25 N -0.973 5.973 26 Si 0.975 3.025 27 H -0.260 1.260 28 H -0.294 1.294 29 H -0.295 1.295 30 H 0.044 0.956 31 H 0.044 0.956 32 H 0.080 0.920 33 H 0.115 0.885 34 H 0.062 0.938 35 H 0.097 0.903 36 H 0.123 0.877 37 H 0.172 0.828 38 H 0.168 0.832 39 H 0.437 0.563 40 H 0.431 0.569 41 H 0.045 0.955 42 H 0.074 0.926 43 H 0.024 0.976 44 H 0.032 0.968 45 H 0.369 0.631 46 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.149 5.497 -28.518 29.065 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.098 4.098 3 H 0.103 0.897 4 C -0.162 4.162 5 C -0.025 4.025 6 N -0.329 5.329 7 C 0.274 3.726 8 O -0.466 6.466 9 C -0.036 4.036 10 N -0.215 5.215 11 C 0.116 3.884 12 O -0.240 6.240 13 N -0.186 5.186 14 N -0.182 5.182 15 C 0.112 3.888 16 O -0.234 6.234 17 C 0.005 3.995 18 C -0.108 4.108 19 H 0.066 0.934 20 C 0.029 3.971 21 N -0.391 5.391 22 C -0.375 4.375 23 H 0.098 0.902 24 C -0.271 4.271 25 N -0.624 5.624 26 Si 0.803 3.197 27 H -0.184 1.184 28 H -0.221 1.221 29 H -0.222 1.222 30 H 0.064 0.936 31 H 0.064 0.936 32 H 0.099 0.901 33 H 0.133 0.867 34 H 0.081 0.919 35 H 0.115 0.885 36 H 0.141 0.859 37 H 0.189 0.811 38 H 0.185 0.815 39 H 0.300 0.700 40 H 0.293 0.707 41 H 0.063 0.937 42 H 0.092 0.908 43 H 0.041 0.959 44 H 0.050 0.950 45 H 0.200 0.800 46 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 2.290 4.245 -27.600 28.018 hybrid contribution -1.059 0.716 1.741 2.160 sum 1.231 4.961 -25.858 26.359 Atomic orbital electron populations 1.21865 0.94643 1.01605 1.02293 1.21105 0.96233 0.99767 0.92716 0.89683 1.22006 0.94531 1.01494 0.98192 1.22318 0.94923 1.01530 0.83777 1.48215 1.41789 1.34257 1.08633 1.21436 0.79663 0.79788 0.91748 1.90859 1.59420 1.60796 1.35531 1.22173 0.95403 0.91259 0.94723 1.46670 1.07749 1.08610 1.58448 1.21308 0.88278 0.80674 0.98172 1.85035 1.23009 1.77907 1.38058 1.78222 0.95247 1.21086 1.24081 1.78216 1.19392 0.97616 1.22967 1.21311 0.79511 0.89648 0.98289 1.84835 1.70180 1.29644 1.38778 1.21279 0.94022 0.98387 0.85796 1.21481 0.93951 0.99463 0.95857 0.93384 1.20948 0.97172 0.93893 0.85108 1.42698 1.65210 1.29098 1.02112 1.19705 1.26698 1.06096 0.85027 0.90215 1.25643 1.01604 0.97916 1.01943 1.69874 1.44512 1.18991 1.29063 0.85054 0.77092 0.77768 0.79748 1.18411 1.22116 1.22235 0.93646 0.93649 0.90088 0.86687 0.91917 0.88504 0.85870 0.81109 0.81474 0.69962 0.70691 0.93656 0.90807 0.95857 0.95017 0.79971 0.94209 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.63 8.81 71.98 0.63 -2.00 16 2 C -0.08 -1.41 2.23 -10.77 -0.02 -1.43 16 3 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 4 C -0.12 -1.20 5.36 30.67 0.16 -1.03 16 5 C 0.09 0.75 6.34 86.36 0.55 1.30 16 6 N -0.60 -12.19 2.98 -819.74 -2.44 -14.63 16 7 C 0.49 11.63 7.77 87.66 0.68 12.31 16 8 O -0.59 -22.68 15.84 -3.06 -0.05 -22.73 16 9 C 0.09 1.07 4.84 85.63 0.41 1.48 16 10 N -0.49 -10.27 2.25 -759.26 -1.71 -11.98 16 11 C 0.43 10.63 9.15 179.72 1.65 12.28 16 12 O -0.44 -8.07 13.58 -89.48 -1.21 -9.28 16 13 N -0.34 -10.96 12.72 -173.65 -2.21 -13.17 16 14 N -0.34 -10.69 12.72 -173.65 -2.21 -12.89 16 15 C 0.42 10.23 9.15 179.72 1.65 11.87 16 16 O -0.43 -7.28 13.58 -89.44 -1.21 -8.49 16 17 C 0.13 3.93 5.49 86.22 0.47 4.40 16 18 C -0.09 -2.59 1.90 -10.86 -0.02 -2.61 16 19 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 20 C 0.16 5.99 5.41 86.38 0.47 6.45 16 21 N -0.75 -39.29 5.38 -343.45 -1.85 -41.13 16 22 C -0.24 -13.97 9.99 84.03 0.84 -13.13 16 23 H 0.08 4.32 7.83 -2.91 -0.02 4.30 16 24 C -0.08 -4.74 5.50 84.86 0.47 -4.27 16 25 N -0.97 -63.42 13.06 21.65 0.28 -63.14 16 26 Si 0.97 47.68 29.55 68.60 2.03 49.71 16 27 H -0.26 -11.69 7.11 99.48 0.71 -10.99 16 28 H -0.29 -14.38 7.11 99.48 0.71 -13.68 16 29 H -0.30 -14.50 7.11 99.48 0.71 -13.79 16 30 H 0.04 0.89 8.14 -2.39 -0.02 0.87 16 31 H 0.04 1.00 6.29 -2.39 -0.02 0.98 16 32 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 33 H 0.11 0.38 8.14 -2.38 -0.02 0.36 16 34 H 0.06 0.73 8.14 -2.39 -0.02 0.72 16 35 H 0.10 0.48 8.14 -2.39 -0.02 0.46 16 36 H 0.12 -0.07 5.93 -2.38 -0.01 -0.08 16 37 H 0.17 0.61 7.94 -2.39 -0.02 0.59 16 38 H 0.17 0.57 7.69 -2.39 -0.02 0.56 16 39 H 0.44 1.65 9.06 -74.06 -0.67 0.97 16 40 H 0.43 4.56 9.06 -74.06 -0.67 3.88 16 41 H 0.04 1.95 6.20 -2.39 -0.01 1.94 16 42 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 43 H 0.02 0.89 8.14 -2.39 -0.02 0.87 16 44 H 0.03 1.22 6.14 -2.39 -0.01 1.20 16 45 H 0.37 21.44 6.89 -92.71 -0.64 20.80 16 46 H 0.25 15.78 8.31 -92.71 -0.77 15.00 16 Total: -1.00 -97.54 379.56 -3.57 -101.11 By element: Atomic # 1 Polarization: 21.94 SS G_CDS: -0.92 Total: 21.01 kcal Atomic # 6 Polarization: 17.68 SS G_CDS: 7.94 Total: 25.62 kcal Atomic # 7 Polarization: -146.81 SS G_CDS: -10.13 Total: -156.94 kcal Atomic # 8 Polarization: -38.03 SS G_CDS: -2.48 Total: -40.50 kcal Atomic # 14 Polarization: 47.68 SS G_CDS: 2.03 Total: 49.71 kcal Total: -97.54 -3.57 -101.11 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001133270505.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.865 kcal (2) G-P(sol) polarization free energy of solvation -97.539 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.674 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.568 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -101.108 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.243 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds