Wall clock time and date at job start Tue Mar 31 2020 22:24:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.45966 * 2 1 4 4 C 1.53037 * 109.46300 * 119.97485 * 2 1 3 5 5 C 1.53191 * 109.31499 * 181.37285 * 4 2 1 6 6 N 1.46925 * 108.77423 * 305.36620 * 5 4 2 7 7 C 1.34779 * 120.63076 * 233.58539 * 6 5 4 8 8 O 1.21283 * 119.99759 * 180.02562 * 7 6 5 9 9 C 1.50696 * 120.00151 * 0.02562 * 7 6 5 10 10 N 1.46493 * 109.47361 * 180.02562 * 9 7 6 11 11 C 1.36375 * 125.96480 * 269.68984 * 10 9 7 12 12 O 1.35629 * 125.98438 * 0.03965 * 11 10 9 13 13 N 1.30907 * 108.02276 * 179.88744 * 11 10 9 14 14 N 1.40114 * 107.94145 * 0.36968 * 13 11 10 15 15 C 1.30906 * 107.93776 * 359.76779 * 14 13 11 16 16 O 1.35628 * 125.98925 * 180.02562 * 15 14 13 17 17 C 1.46926 * 118.73914 * 53.60547 * 6 5 4 18 18 C 1.53043 * 109.44634 * 240.03782 * 2 1 3 19 19 H 1.09000 * 109.49902 * 298.56731 * 18 2 1 20 20 C 1.52996 * 109.49773 * 58.66767 * 18 2 1 21 21 N 1.46504 * 109.46928 * 184.83272 * 20 18 2 22 22 C 1.36945 * 119.99811 * 179.97438 * 21 20 18 23 23 H 1.08001 * 119.99541 * 0.02562 * 22 21 20 24 24 C 1.38804 * 119.99820 * 180.02562 * 22 21 20 25 25 N 1.31621 * 120.00162 * 0.02562 * 24 22 21 26 26 Si 1.86805 * 119.99835 * 180.02562 * 24 22 21 27 27 H 1.48501 * 109.47044 * 60.00308 * 26 24 22 28 28 H 1.48508 * 109.46902 * 179.97438 * 26 24 22 29 29 H 1.48499 * 109.47085 * 299.99766 * 26 24 22 30 30 H 1.08998 * 109.46704 * 300.01854 * 1 2 3 31 31 H 1.08993 * 109.47252 * 60.02426 * 1 2 3 32 32 H 1.09005 * 109.46888 * 180.02562 * 1 2 3 33 33 H 1.08997 * 109.49928 * 61.42201 * 4 2 1 34 34 H 1.08998 * 109.49765 * 301.32528 * 4 2 1 35 35 H 1.08998 * 109.59071 * 185.58119 * 5 4 2 36 36 H 1.09005 * 109.58843 * 65.15147 * 5 4 2 37 37 H 1.09003 * 109.47023 * 300.00663 * 9 7 6 38 38 H 1.09004 * 109.46964 * 59.99901 * 9 7 6 39 39 H 0.96703 * 114.00058 * 90.00204 * 12 11 10 40 40 H 0.96703 * 114.00476 * 269.97943 * 16 15 14 41 41 H 1.09006 * 109.58406 * 66.18027 * 17 6 5 42 42 H 1.09002 * 109.59019 * 186.60016 * 17 6 5 43 43 H 1.08997 * 109.47349 * 304.83465 * 20 18 2 44 44 H 1.09004 * 109.47089 * 64.83707 * 20 18 2 45 45 H 0.96997 * 119.99946 * 0.02562 * 21 20 18 46 46 H 0.96997 * 119.99923 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0400 -0.7209 1.2499 5 6 3.5715 -0.6890 1.2639 6 7 4.0677 -1.2492 -0.0005 7 6 4.9618 -2.2578 -0.0007 8 8 5.3641 -2.7112 -1.0512 9 6 5.4616 -2.8220 1.3042 10 7 6.4174 -3.8992 1.0363 11 6 6.1151 -5.2215 0.8952 12 8 4.8770 -5.7691 0.9777 13 7 7.2288 -5.8691 0.6631 14 7 8.2769 -4.9392 0.6631 15 6 7.7657 -3.7557 0.8903 16 8 8.4560 -2.5907 0.9665 17 6 3.5711 -0.6888 -1.2646 18 6 2.0396 -0.7207 -1.2503 19 1 1.6974 -1.7556 -1.2385 20 6 1.5024 -0.0187 -2.4990 21 7 1.8944 -0.7748 -3.6910 22 6 1.5234 -0.3348 -4.9336 23 1 0.9421 0.5698 -5.0348 24 6 1.8943 -1.0515 -6.0630 25 7 2.6023 -2.1542 -5.9396 26 14 1.3888 -0.4509 -7.7581 27 1 1.9516 0.9033 -7.9917 28 1 1.9062 -1.3861 -8.7892 29 1 -0.0928 -0.3924 -7.8410 30 1 -0.3633 0.5141 0.8898 31 1 -0.3633 0.5134 -0.8901 32 1 -0.3633 -1.0277 0.0005 33 1 1.6978 -1.7557 1.2381 34 1 1.6575 -0.2209 2.1397 35 1 3.9418 -1.2851 2.0979 36 1 3.9146 0.3405 1.3670 37 1 5.9527 -2.0346 1.8761 38 1 4.6208 -3.2154 1.8757 39 1 4.4080 -5.8102 0.1330 40 1 8.7632 -2.3730 1.8572 41 1 3.9142 0.3407 -1.3676 42 1 3.9412 -1.2846 -2.0989 43 1 0.4152 0.0369 -2.4452 44 1 1.9154 0.9885 -2.5555 45 1 2.4162 -1.5874 -3.6000 46 1 2.8612 -2.6551 -6.7288 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001133270507.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:24:13 Heat of formation + Delta-G solvation = -4.197129 kcal Electronic energy + Delta-G solvation = -30564.323987 eV Core-core repulsion = 26299.524951 eV Total energy + Delta-G solvation = -4264.799036 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -42.51766 -40.41395 -38.40089 -38.21644 -37.29932 -35.19153 -34.53649 -33.85994 -32.00460 -30.05049 -29.76449 -29.17652 -27.69589 -25.51065 -23.62110 -23.29545 -22.99586 -22.23995 -21.37118 -20.41833 -19.52032 -19.13017 -18.67125 -17.78089 -17.09470 -16.99943 -16.47425 -15.82446 -15.65896 -15.50674 -14.94473 -14.55593 -14.46850 -14.06369 -13.75329 -13.69428 -13.64128 -13.20287 -13.14175 -12.87042 -12.77101 -12.63056 -12.52444 -12.01783 -11.91105 -11.71272 -11.55308 -11.10163 -10.96861 -10.88833 -10.80354 -10.75441 -10.70352 -10.39153 -10.30036 -10.04564 -9.74953 -9.63077 -9.60770 -8.90189 -8.75030 -6.93043 -5.75281 -3.05549 1.21596 1.51855 2.04085 2.27845 2.71424 3.02593 3.44064 3.48256 3.50224 3.51054 3.98598 4.05532 4.38912 4.46150 4.56898 4.63450 4.73840 4.96770 4.97761 4.98331 5.08522 5.13159 5.43171 5.46989 5.52240 5.53885 5.58468 5.65983 5.74633 5.80301 5.83618 5.90647 6.03212 6.10931 6.20657 6.31765 6.40499 6.44648 6.71296 6.78604 6.78659 7.04804 7.17544 7.68709 7.69221 7.88729 8.42309 9.53343 10.10149 10.43888 11.46901 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.010465 B = 0.003306 C = 0.002761 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2674.969472 B = 8467.533942 C =10138.334929 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.085 4.085 3 H 0.072 0.928 4 C -0.129 4.129 5 C 0.103 3.897 6 N -0.604 5.604 7 C 0.493 3.507 8 O -0.513 6.513 9 C 0.084 3.916 10 N -0.498 5.498 11 C 0.418 3.582 12 O -0.440 6.440 13 N -0.293 5.293 14 N -0.295 5.295 15 C 0.416 3.584 16 O -0.432 6.432 17 C 0.120 3.880 18 C -0.101 4.101 19 H 0.074 0.926 20 C 0.159 3.841 21 N -0.733 5.733 22 C -0.245 4.245 23 H 0.069 0.931 24 C -0.011 4.011 25 N -0.930 5.930 26 Si 0.906 3.094 27 H -0.286 1.286 28 H -0.291 1.291 29 H -0.286 1.286 30 H 0.049 0.951 31 H 0.066 0.934 32 H 0.054 0.946 33 H 0.068 0.932 34 H 0.076 0.924 35 H 0.078 0.922 36 H 0.075 0.925 37 H 0.123 0.877 38 H 0.128 0.872 39 H 0.418 0.582 40 H 0.408 0.592 41 H 0.069 0.931 42 H 0.105 0.895 43 H 0.028 0.972 44 H 0.018 0.982 45 H 0.384 0.616 46 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.417 3.000 24.835 25.132 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.104 4.104 3 H 0.090 0.910 4 C -0.167 4.167 5 C -0.020 4.020 6 N -0.338 5.338 7 C 0.278 3.722 8 O -0.387 6.387 9 C -0.044 4.044 10 N -0.218 5.218 11 C 0.108 3.892 12 O -0.241 6.241 13 N -0.137 5.137 14 N -0.139 5.139 15 C 0.106 3.894 16 O -0.231 6.231 17 C -0.001 4.001 18 C -0.120 4.120 19 H 0.092 0.908 20 C 0.031 3.969 21 N -0.378 5.378 22 C -0.376 4.376 23 H 0.087 0.913 24 C -0.207 4.207 25 N -0.578 5.578 26 Si 0.737 3.263 27 H -0.213 1.213 28 H -0.217 1.217 29 H -0.213 1.213 30 H 0.069 0.931 31 H 0.085 0.915 32 H 0.073 0.927 33 H 0.087 0.913 34 H 0.094 0.906 35 H 0.096 0.904 36 H 0.093 0.907 37 H 0.141 0.859 38 H 0.146 0.854 39 H 0.278 0.722 40 H 0.266 0.734 41 H 0.087 0.913 42 H 0.123 0.877 43 H 0.046 0.954 44 H 0.036 0.964 45 H 0.218 0.782 46 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 3.626 1.657 23.809 24.141 hybrid contribution -1.320 1.432 -0.666 2.058 sum 2.306 3.089 23.143 23.462 Atomic orbital electron populations 1.21881 0.94773 1.02038 1.01851 1.21099 0.96164 0.99408 0.93734 0.90951 1.21991 0.94108 1.01846 0.98798 1.21830 0.95363 0.99558 0.85216 1.48162 1.42522 1.34774 1.08343 1.20529 0.80179 0.80667 0.90841 1.90872 1.56444 1.58919 1.32475 1.21778 0.94454 0.90790 0.97353 1.46621 1.08136 1.08040 1.59006 1.21283 0.88880 0.79403 0.99591 1.84852 1.22676 1.78724 1.37838 1.78373 0.94711 1.19788 1.20817 1.78349 1.18311 0.95453 1.21776 1.21229 0.79397 0.88662 1.00085 1.85045 1.69763 1.32974 1.35301 1.21815 0.93864 0.99297 0.85156 1.21719 0.94167 1.00806 0.95353 0.90774 1.20721 0.96894 0.94059 0.85273 1.42398 1.65332 1.29238 1.00803 1.19141 1.28203 1.06531 0.83757 0.91280 1.24751 1.00655 0.97450 0.97847 1.69654 1.42107 1.17259 1.28755 0.86290 0.77985 0.77712 0.84298 1.21260 1.21650 1.21278 0.93147 0.91527 0.92735 0.91323 0.90555 0.90410 0.90718 0.85873 0.85377 0.72204 0.73402 0.91267 0.87720 0.95443 0.96389 0.78213 0.93367 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.50 8.82 37.16 0.33 -1.17 16 2 C -0.08 -0.87 2.23 -90.58 -0.20 -1.07 16 3 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 4 C -0.13 -0.94 5.36 -26.61 -0.14 -1.08 16 5 C 0.10 0.69 6.34 -3.71 -0.02 0.66 16 6 N -0.60 -6.78 2.97 -172.77 -0.51 -7.30 16 7 C 0.49 6.22 7.77 -10.99 -0.09 6.14 16 8 O -0.51 -9.50 15.84 5.55 0.09 -9.41 16 9 C 0.08 0.66 4.84 -5.20 -0.03 0.64 16 10 N -0.50 -5.59 2.25 -121.35 -0.27 -5.87 16 11 C 0.42 5.34 9.15 -88.81 -0.81 4.53 16 12 O -0.44 -4.37 13.58 -18.58 -0.25 -4.62 16 13 N -0.29 -4.57 12.72 29.66 0.38 -4.19 16 14 N -0.30 -4.55 12.72 29.65 0.38 -4.17 16 15 C 0.42 5.17 9.15 -88.81 -0.81 4.36 16 16 O -0.43 -3.96 13.58 -18.58 -0.25 -4.22 16 17 C 0.12 1.80 5.52 -3.71 -0.02 1.78 16 18 C -0.10 -1.46 1.92 -90.50 -0.17 -1.63 16 19 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 20 C 0.16 2.98 5.41 -4.04 -0.02 2.96 16 21 N -0.73 -18.27 5.38 -59.91 -0.32 -18.60 16 22 C -0.25 -6.85 9.99 -15.06 -0.15 -7.00 16 23 H 0.07 1.86 7.83 -52.49 -0.41 1.45 16 24 C -0.01 -0.31 5.50 -17.43 -0.10 -0.40 16 25 N -0.93 -28.69 13.06 55.49 0.72 -27.96 16 26 Si 0.91 22.60 29.55 -169.99 -5.02 17.58 16 27 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 28 H -0.29 -7.34 7.11 56.52 0.40 -6.93 16 29 H -0.29 -6.98 7.11 56.52 0.40 -6.57 16 30 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.07 0.77 6.29 -51.93 -0.33 0.45 16 32 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 35 H 0.08 0.28 5.93 -51.93 -0.31 -0.03 16 36 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 37 H 0.12 0.53 7.94 -51.93 -0.41 0.12 16 38 H 0.13 0.67 7.69 -51.93 -0.40 0.27 16 39 H 0.42 2.89 9.06 45.56 0.41 3.30 16 40 H 0.41 0.99 9.06 45.56 0.41 1.40 16 41 H 0.07 1.02 8.14 -51.93 -0.42 0.59 16 42 H 0.10 2.07 6.21 -51.93 -0.32 1.75 16 43 H 0.03 0.52 6.15 -51.93 -0.32 0.20 16 44 H 0.02 0.35 8.14 -51.93 -0.42 -0.08 16 45 H 0.38 10.28 6.89 -40.82 -0.28 10.00 16 46 H 0.26 7.71 8.31 -40.82 -0.34 7.37 16 LS Contribution 379.60 15.07 5.72 5.72 Total: -1.00 -39.85 379.60 -6.48 -46.33 By element: Atomic # 1 Polarization: 12.89 SS G_CDS: -4.89 Total: 8.00 kcal Atomic # 6 Polarization: 10.94 SS G_CDS: -2.24 Total: 8.71 kcal Atomic # 7 Polarization: -68.46 SS G_CDS: 0.37 Total: -68.08 kcal Atomic # 8 Polarization: -17.83 SS G_CDS: -0.42 Total: -18.25 kcal Atomic # 14 Polarization: 22.60 SS G_CDS: -5.02 Total: 17.58 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -39.85 -6.48 -46.33 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001133270507.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.136 kcal (2) G-P(sol) polarization free energy of solvation -39.851 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.285 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.482 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.333 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.197 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds