Wall clock time and date at job start Tue Mar 31 2020 22:24:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.45966 * 2 1 4 4 C 1.53037 * 109.46300 * 119.97485 * 2 1 3 5 5 C 1.53191 * 109.31499 * 181.37285 * 4 2 1 6 6 N 1.46925 * 108.77423 * 305.36620 * 5 4 2 7 7 C 1.34779 * 120.63076 * 233.58539 * 6 5 4 8 8 O 1.21283 * 119.99759 * 180.02562 * 7 6 5 9 9 C 1.50696 * 120.00151 * 0.02562 * 7 6 5 10 10 N 1.46493 * 109.47361 * 180.02562 * 9 7 6 11 11 C 1.36375 * 125.96480 * 269.68984 * 10 9 7 12 12 O 1.35629 * 125.98438 * 0.03965 * 11 10 9 13 13 N 1.30907 * 108.02276 * 179.88744 * 11 10 9 14 14 N 1.40114 * 107.94145 * 0.36968 * 13 11 10 15 15 C 1.30906 * 107.93776 * 359.76779 * 14 13 11 16 16 O 1.35628 * 125.98925 * 180.02562 * 15 14 13 17 17 C 1.46926 * 118.73914 * 53.60547 * 6 5 4 18 18 C 1.53043 * 109.44634 * 240.03782 * 2 1 3 19 19 H 1.09000 * 109.49902 * 298.56731 * 18 2 1 20 20 C 1.52996 * 109.49773 * 58.66767 * 18 2 1 21 21 N 1.46504 * 109.46928 * 184.83272 * 20 18 2 22 22 C 1.36945 * 119.99811 * 179.97438 * 21 20 18 23 23 H 1.08001 * 119.99541 * 0.02562 * 22 21 20 24 24 C 1.38804 * 119.99820 * 180.02562 * 22 21 20 25 25 N 1.31621 * 120.00162 * 0.02562 * 24 22 21 26 26 Si 1.86805 * 119.99835 * 180.02562 * 24 22 21 27 27 H 1.48501 * 109.47044 * 60.00308 * 26 24 22 28 28 H 1.48508 * 109.46902 * 179.97438 * 26 24 22 29 29 H 1.48499 * 109.47085 * 299.99766 * 26 24 22 30 30 H 1.08998 * 109.46704 * 300.01854 * 1 2 3 31 31 H 1.08993 * 109.47252 * 60.02426 * 1 2 3 32 32 H 1.09005 * 109.46888 * 180.02562 * 1 2 3 33 33 H 1.08997 * 109.49928 * 61.42201 * 4 2 1 34 34 H 1.08998 * 109.49765 * 301.32528 * 4 2 1 35 35 H 1.08998 * 109.59071 * 185.58119 * 5 4 2 36 36 H 1.09005 * 109.58843 * 65.15147 * 5 4 2 37 37 H 1.09003 * 109.47023 * 300.00663 * 9 7 6 38 38 H 1.09004 * 109.46964 * 59.99901 * 9 7 6 39 39 H 0.96703 * 114.00058 * 90.00204 * 12 11 10 40 40 H 0.96703 * 114.00476 * 269.97943 * 16 15 14 41 41 H 1.09006 * 109.58406 * 66.18027 * 17 6 5 42 42 H 1.09002 * 109.59019 * 186.60016 * 17 6 5 43 43 H 1.08997 * 109.47349 * 304.83465 * 20 18 2 44 44 H 1.09004 * 109.47089 * 64.83707 * 20 18 2 45 45 H 0.96997 * 119.99946 * 0.02562 * 21 20 18 46 46 H 0.96997 * 119.99923 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0400 -0.7209 1.2499 5 6 3.5715 -0.6890 1.2639 6 7 4.0677 -1.2492 -0.0005 7 6 4.9618 -2.2578 -0.0007 8 8 5.3641 -2.7112 -1.0512 9 6 5.4616 -2.8220 1.3042 10 7 6.4174 -3.8992 1.0363 11 6 6.1151 -5.2215 0.8952 12 8 4.8770 -5.7691 0.9777 13 7 7.2288 -5.8691 0.6631 14 7 8.2769 -4.9392 0.6631 15 6 7.7657 -3.7557 0.8903 16 8 8.4560 -2.5907 0.9665 17 6 3.5711 -0.6888 -1.2646 18 6 2.0396 -0.7207 -1.2503 19 1 1.6974 -1.7556 -1.2385 20 6 1.5024 -0.0187 -2.4990 21 7 1.8944 -0.7748 -3.6910 22 6 1.5234 -0.3348 -4.9336 23 1 0.9421 0.5698 -5.0348 24 6 1.8943 -1.0515 -6.0630 25 7 2.6023 -2.1542 -5.9396 26 14 1.3888 -0.4509 -7.7581 27 1 1.9516 0.9033 -7.9917 28 1 1.9062 -1.3861 -8.7892 29 1 -0.0928 -0.3924 -7.8410 30 1 -0.3633 0.5141 0.8898 31 1 -0.3633 0.5134 -0.8901 32 1 -0.3633 -1.0277 0.0005 33 1 1.6978 -1.7557 1.2381 34 1 1.6575 -0.2209 2.1397 35 1 3.9418 -1.2851 2.0979 36 1 3.9146 0.3405 1.3670 37 1 5.9527 -2.0346 1.8761 38 1 4.6208 -3.2154 1.8757 39 1 4.4080 -5.8102 0.1330 40 1 8.7632 -2.3730 1.8572 41 1 3.9142 0.3407 -1.3676 42 1 3.9412 -1.2846 -2.0989 43 1 0.4152 0.0369 -2.4452 44 1 1.9154 0.9885 -2.5555 45 1 2.4162 -1.5874 -3.6000 46 1 2.8612 -2.6551 -6.7288 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001133270507.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:24:12 Heat of formation + Delta-G solvation = -41.980442 kcal Electronic energy + Delta-G solvation = -30565.962394 eV Core-core repulsion = 26299.524951 eV Total energy + Delta-G solvation = -4266.437443 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -43.41604 -41.37971 -39.28442 -39.18086 -38.08659 -36.67448 -35.48716 -35.09570 -33.53680 -31.60887 -30.72576 -30.00624 -28.71592 -27.00969 -25.00762 -24.41348 -23.90882 -23.12170 -22.59632 -21.46446 -20.48224 -19.90291 -19.51050 -19.17125 -18.56279 -17.89055 -17.38707 -16.77027 -16.74751 -16.56253 -16.39652 -15.61687 -15.47243 -15.43740 -15.13039 -14.66371 -14.58508 -14.30483 -14.15021 -14.06040 -13.91973 -13.48090 -13.41017 -13.10574 -13.06986 -12.77359 -12.67429 -12.63091 -12.53252 -12.23362 -12.02978 -11.93319 -11.82508 -11.76023 -11.63402 -11.30309 -11.16643 -10.96205 -10.68840 -10.57914 -9.73834 -9.02274 -7.97631 -5.27579 0.32666 0.73155 1.10265 1.36957 1.43018 1.46776 1.53213 1.83377 2.18020 2.53054 2.79101 3.23882 3.35834 3.41913 3.67518 3.79964 3.84043 3.94637 4.05596 4.10619 4.18171 4.21470 4.28597 4.40324 4.58451 4.60346 4.63157 4.74019 4.79231 4.83656 4.95424 4.97393 5.08512 5.14767 5.18054 5.25031 5.28923 5.42575 5.46215 5.51098 5.59662 6.13790 6.23080 6.27425 6.42168 6.75069 6.97516 7.28994 8.06442 8.27260 9.25515 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.010465 B = 0.003306 C = 0.002761 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2674.969472 B = 8467.533942 C =10138.334929 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.080 4.080 3 H 0.083 0.917 4 C -0.124 4.124 5 C 0.095 3.905 6 N -0.597 5.597 7 C 0.487 3.513 8 O -0.586 6.586 9 C 0.090 3.910 10 N -0.495 5.495 11 C 0.422 3.578 12 O -0.433 6.433 13 N -0.338 5.338 14 N -0.342 5.342 15 C 0.428 3.572 16 O -0.434 6.434 17 C 0.128 3.872 18 C -0.086 4.086 19 H 0.052 0.948 20 C 0.155 3.845 21 N -0.748 5.748 22 C -0.247 4.247 23 H 0.079 0.921 24 C -0.077 4.077 25 N -0.972 5.972 26 Si 0.974 3.026 27 H -0.276 1.276 28 H -0.298 1.298 29 H -0.274 1.274 30 H 0.079 0.921 31 H 0.044 0.956 32 H 0.046 0.954 33 H 0.064 0.936 34 H 0.114 0.886 35 H 0.124 0.876 36 H 0.095 0.905 37 H 0.173 0.827 38 H 0.167 0.833 39 H 0.430 0.570 40 H 0.438 0.562 41 H 0.070 0.930 42 H 0.046 0.954 43 H 0.032 0.968 44 H 0.021 0.979 45 H 0.370 0.630 46 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.232 5.367 28.463 28.991 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.099 4.099 3 H 0.101 0.899 4 C -0.162 4.162 5 C -0.026 4.026 6 N -0.329 5.329 7 C 0.274 3.726 8 O -0.466 6.466 9 C -0.036 4.036 10 N -0.215 5.215 11 C 0.111 3.889 12 O -0.236 6.236 13 N -0.182 5.182 14 N -0.186 5.186 15 C 0.117 3.883 16 O -0.238 6.238 17 C 0.005 3.995 18 C -0.106 4.106 19 H 0.071 0.929 20 C 0.028 3.972 21 N -0.390 5.390 22 C -0.379 4.379 23 H 0.097 0.903 24 C -0.269 4.269 25 N -0.623 5.623 26 Si 0.803 3.197 27 H -0.202 1.202 28 H -0.225 1.225 29 H -0.200 1.200 30 H 0.098 0.902 31 H 0.063 0.937 32 H 0.065 0.935 33 H 0.083 0.917 34 H 0.132 0.868 35 H 0.142 0.858 36 H 0.113 0.887 37 H 0.190 0.810 38 H 0.184 0.816 39 H 0.292 0.708 40 H 0.301 0.699 41 H 0.088 0.912 42 H 0.064 0.936 43 H 0.050 0.950 44 H 0.039 0.961 45 H 0.201 0.799 46 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 2.391 4.108 27.537 27.944 hybrid contribution -1.023 0.834 -1.734 2.179 sum 1.368 4.942 25.803 26.308 Atomic orbital electron populations 1.21863 0.94592 1.01681 1.02249 1.21108 0.96252 0.99722 0.92789 0.89891 1.21998 0.94432 1.01578 0.98151 1.22313 0.95002 1.01452 0.83785 1.48216 1.41829 1.34236 1.08632 1.21432 0.79397 0.80043 0.91748 1.90858 1.59023 1.61199 1.35516 1.22172 0.95503 0.91168 0.94727 1.46664 1.08193 1.08145 1.58470 1.21345 0.89124 0.80112 0.98334 1.84830 1.21536 1.78563 1.38720 1.78228 0.95896 1.21260 1.22817 1.78212 1.19299 0.96894 1.24206 1.21285 0.80043 0.88794 0.98162 1.85016 1.69427 1.31244 1.38101 1.21372 0.94092 0.98243 0.85813 1.21550 0.93683 0.99625 0.95703 0.92937 1.20947 0.97158 0.93874 0.85185 1.42665 1.65105 1.29268 1.02008 1.19629 1.26873 1.06269 0.85094 0.90346 1.25620 1.01515 0.97928 1.01867 1.69850 1.44280 1.18966 1.29194 0.85204 0.78071 0.77160 0.79293 1.20222 1.22455 1.19961 0.90173 0.93675 0.93491 0.91730 0.86776 0.85841 0.88691 0.81002 0.81577 0.70777 0.69898 0.91154 0.93555 0.94979 0.96104 0.79892 0.94186 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.59 8.82 71.98 0.63 -1.96 16 2 C -0.08 -1.40 2.23 -10.76 -0.02 -1.43 16 3 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 4 C -0.12 -1.18 5.36 30.67 0.16 -1.01 16 5 C 0.09 0.76 6.34 86.36 0.55 1.30 16 6 N -0.60 -12.22 2.97 -818.89 -2.43 -14.65 16 7 C 0.49 11.63 7.77 87.66 0.68 12.31 16 8 O -0.59 -22.68 15.84 -3.04 -0.05 -22.73 16 9 C 0.09 1.06 4.84 85.63 0.41 1.48 16 10 N -0.49 -10.26 2.25 -759.28 -1.71 -11.97 16 11 C 0.42 10.58 9.15 179.71 1.65 12.23 16 12 O -0.43 -8.21 13.58 -89.42 -1.21 -9.42 16 13 N -0.34 -10.85 12.72 -173.65 -2.21 -13.05 16 14 N -0.34 -10.76 12.72 -173.66 -2.21 -12.97 16 15 C 0.43 10.24 9.15 179.72 1.65 11.88 16 16 O -0.43 -7.09 13.58 -89.41 -1.21 -8.30 16 17 C 0.13 3.93 5.52 86.36 0.48 4.41 16 18 C -0.09 -2.49 1.92 -10.72 -0.02 -2.51 16 19 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 20 C 0.15 5.93 5.41 86.38 0.47 6.40 16 21 N -0.75 -38.91 5.38 -343.45 -1.85 -40.76 16 22 C -0.25 -14.12 9.99 84.03 0.84 -13.28 16 23 H 0.08 4.23 7.83 -2.91 -0.02 4.21 16 24 C -0.08 -4.59 5.50 84.86 0.47 -4.13 16 25 N -0.97 -62.71 13.06 21.65 0.28 -62.43 16 26 Si 0.97 47.46 29.55 68.60 2.03 49.49 16 27 H -0.28 -12.88 7.11 99.48 0.71 -12.18 16 28 H -0.30 -14.77 7.11 99.48 0.71 -14.06 16 29 H -0.27 -12.65 7.11 99.48 0.71 -11.95 16 30 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 31 H 0.04 0.98 6.29 -2.39 -0.02 0.97 16 32 H 0.05 0.90 8.14 -2.38 -0.02 0.88 16 33 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 34 H 0.11 0.39 8.14 -2.39 -0.02 0.37 16 35 H 0.12 -0.06 5.93 -2.39 -0.01 -0.08 16 36 H 0.09 0.50 8.14 -2.38 -0.02 0.48 16 37 H 0.17 0.39 7.94 -2.39 -0.02 0.37 16 38 H 0.17 0.77 7.69 -2.38 -0.02 0.76 16 39 H 0.43 5.87 9.06 -74.06 -0.67 5.20 16 40 H 0.44 0.75 9.06 -74.06 -0.67 0.08 16 41 H 0.07 2.09 8.14 -2.38 -0.02 2.07 16 42 H 0.05 1.99 6.21 -2.39 -0.01 1.98 16 43 H 0.03 1.22 6.15 -2.39 -0.01 1.21 16 44 H 0.02 0.80 8.14 -2.39 -0.02 0.78 16 45 H 0.37 21.15 6.89 -92.71 -0.64 20.51 16 46 H 0.25 15.71 8.31 -92.71 -0.77 14.94 16 Total: -1.00 -96.30 379.60 -3.56 -99.86 By element: Atomic # 1 Polarization: 22.16 SS G_CDS: -0.92 Total: 21.24 kcal Atomic # 6 Polarization: 17.77 SS G_CDS: 7.94 Total: 25.70 kcal Atomic # 7 Polarization: -145.72 SS G_CDS: -10.12 Total: -155.84 kcal Atomic # 8 Polarization: -37.97 SS G_CDS: -2.48 Total: -40.45 kcal Atomic # 14 Polarization: 47.46 SS G_CDS: 2.03 Total: 49.49 kcal Total: -96.30 -3.56 -99.86 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001133270507.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.880 kcal (2) G-P(sol) polarization free energy of solvation -96.304 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.424 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.557 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -99.861 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.980 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds