Wall clock time and date at job start Tue Mar 31 2020 22:24:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 109.46300 * 2 1 4 4 C 1.53043 * 109.44748 * 119.96831 * 2 1 3 5 5 C 1.53187 * 109.31314 * 58.64645 * 4 2 1 6 6 N 1.46921 * 108.77794 * 54.63631 * 5 4 2 7 7 C 1.34775 * 120.63610 * 126.41490 * 6 5 4 8 8 O 1.21279 * 120.00474 * 179.97438 * 7 6 5 9 9 C 1.50700 * 119.99525 * 359.97365 * 7 6 5 10 10 N 1.46503 * 109.47418 * 180.02562 * 9 7 6 11 11 C 1.36373 * 125.96266 * 269.69589 * 10 9 7 12 12 O 1.35625 * 125.99063 * 0.03344 * 11 10 9 13 13 N 1.30910 * 108.02092 * 179.88059 * 11 10 9 14 14 N 1.40109 * 107.93884 * 0.37516 * 13 11 10 15 15 C 1.30906 * 107.94218 * 359.75951 * 14 13 11 16 16 O 1.35629 * 125.99051 * 179.97438 * 15 14 13 17 17 C 1.46931 * 118.73731 * 306.38846 * 6 5 4 18 18 C 1.53046 * 109.46008 * 240.02476 * 2 1 3 19 19 H 1.08994 * 109.49602 * 181.37331 * 18 2 1 20 20 C 1.53005 * 109.49407 * 61.31095 * 18 2 1 21 21 N 1.46497 * 109.46686 * 174.99639 * 20 18 2 22 22 C 1.36941 * 119.99619 * 180.02562 * 21 20 18 23 23 H 1.07998 * 120.00239 * 0.02562 * 22 21 20 24 24 C 1.38813 * 119.99827 * 180.02562 * 22 21 20 25 25 N 1.31619 * 119.99703 * 179.97438 * 24 22 21 26 26 Si 1.86799 * 119.99976 * 0.02562 * 24 22 21 27 27 H 1.48498 * 109.46975 * 90.00118 * 26 24 22 28 28 H 1.48498 * 109.46825 * 209.99856 * 26 24 22 29 29 H 1.48490 * 109.47334 * 329.99947 * 26 24 22 30 30 H 1.08992 * 109.47480 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.47171 * 300.00294 * 1 2 3 32 32 H 1.09008 * 109.46811 * 59.99958 * 1 2 3 33 33 H 1.08992 * 109.49694 * 178.60260 * 4 2 1 34 34 H 1.09007 * 109.49236 * 298.69458 * 4 2 1 35 35 H 1.09007 * 109.58834 * 294.84955 * 5 4 2 36 36 H 1.09001 * 109.58662 * 174.42524 * 5 4 2 37 37 H 1.09002 * 109.47351 * 300.00520 * 9 7 6 38 38 H 1.09002 * 109.46897 * 60.00389 * 9 7 6 39 39 H 0.96701 * 114.00045 * 90.00123 * 12 11 10 40 40 H 0.96712 * 114.00064 * 270.02695 * 16 15 14 41 41 H 1.08997 * 109.58885 * 293.82300 * 17 6 5 42 42 H 1.09000 * 109.58325 * 173.39370 * 17 6 5 43 43 H 1.08996 * 109.47305 * 294.99975 * 20 18 2 44 44 H 1.09008 * 109.47037 * 55.00272 * 20 18 2 45 45 H 0.96997 * 120.00098 * 0.02562 * 21 20 18 46 46 H 0.97000 * 119.99722 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0396 -0.7209 1.2502 5 6 1.4989 -2.1541 1.2643 6 7 1.8619 -2.8090 0.0002 7 6 2.5147 -3.9881 0.0002 8 8 2.8083 -4.5188 -1.0500 9 6 2.8798 -4.6471 1.3054 10 7 3.5779 -5.9070 1.0379 11 6 2.9946 -7.1316 0.8974 12 8 1.6670 -7.3963 0.9801 13 7 3.9404 -8.0065 0.6653 14 7 5.1659 -7.3273 0.6650 15 6 4.9250 -6.0607 0.8917 16 8 5.8527 -5.0743 0.9684 17 6 1.4992 -2.1542 -1.2642 18 6 2.0399 -0.7210 -1.2500 19 1 3.1295 -0.7427 -1.2384 20 6 1.5571 0.0193 -2.4990 21 7 2.1427 -0.6001 -3.6905 22 6 1.8523 -0.1034 -4.9332 23 1 1.1920 0.7451 -5.0348 24 6 2.4067 -0.6906 -6.0622 25 7 2.1272 -0.2135 -7.2566 26 14 3.5483 -2.1587 -5.8865 27 1 2.7530 -3.4120 -5.9295 28 1 4.5310 -2.1576 -6.9998 29 1 4.2683 -2.0736 -4.5906 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8899 32 1 -0.3633 0.5139 -0.8901 33 1 3.1292 -0.7431 1.2386 34 1 1.6954 -0.1934 2.1399 35 1 0.4139 -2.1344 1.3673 36 1 1.9373 -2.7018 2.0986 37 1 3.5308 -3.9855 1.8769 38 1 1.9736 -4.8477 1.8770 39 1 1.2002 -7.3344 0.1355 40 1 6.1998 -4.9291 1.8593 41 1 0.4143 -2.1345 -1.3674 42 1 1.9378 -2.7020 -2.0982 43 1 0.4702 -0.0368 -2.5573 44 1 1.8647 1.0636 -2.4441 45 1 2.7360 -1.3620 -3.5992 46 1 2.5149 -0.6236 -8.0456 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001133270509.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:24:16 Heat of formation + Delta-G solvation = -36.637613 kcal Electronic energy + Delta-G solvation = -30861.781737 eV Core-core repulsion = 26595.575976 eV Total energy + Delta-G solvation = -4266.205761 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -43.43584 -41.54059 -39.45099 -39.20015 -38.10533 -36.85443 -35.51044 -34.94527 -33.70389 -31.98129 -30.74312 -29.71726 -28.70622 -27.03013 -25.68052 -24.62992 -23.92666 -23.18492 -22.60297 -21.52415 -20.10716 -19.92115 -19.53343 -19.09479 -18.60993 -17.90915 -17.43057 -16.85013 -16.74245 -16.57323 -16.41040 -16.09720 -15.96242 -15.36670 -15.04644 -14.84638 -14.70419 -14.41848 -14.33028 -13.97150 -13.87463 -13.52782 -13.43500 -13.41963 -13.08897 -13.01354 -12.68087 -12.57344 -12.49061 -12.23922 -12.06230 -11.92457 -11.82459 -11.75396 -11.64595 -11.37785 -11.28425 -11.03790 -10.73957 -10.59752 -9.70391 -9.35216 -8.11612 -5.42735 0.32070 0.70207 1.08864 1.26678 1.30952 1.32721 1.34227 1.80391 2.16402 2.36840 2.77694 3.20797 3.21109 3.40282 3.49371 3.75551 3.80882 3.93641 3.96300 4.06397 4.10469 4.19906 4.25703 4.33619 4.51228 4.53836 4.61665 4.70475 4.75231 4.76584 4.89209 4.99377 5.05843 5.14125 5.20354 5.22968 5.30416 5.39241 5.44786 5.61198 5.69815 6.13954 6.14108 6.23853 6.39916 6.73713 6.92543 7.00093 7.77966 7.93412 9.10139 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.010156 B = 0.003850 C = 0.003097 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2756.250004 B = 7271.037032 C = 9037.752033 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.081 4.081 3 H 0.077 0.923 4 C -0.124 4.124 5 C 0.093 3.907 6 N -0.595 5.595 7 C 0.488 3.512 8 O -0.587 6.587 9 C 0.089 3.911 10 N -0.495 5.495 11 C 0.424 3.576 12 O -0.431 6.431 13 N -0.339 5.339 14 N -0.342 5.342 15 C 0.426 3.574 16 O -0.436 6.436 17 C 0.124 3.876 18 C -0.094 4.094 19 H 0.057 0.943 20 C 0.159 3.841 21 N -0.762 5.762 22 C -0.230 4.230 23 H 0.066 0.934 24 C -0.052 4.052 25 N -0.978 5.978 26 Si 0.941 3.059 27 H -0.287 1.287 28 H -0.290 1.290 29 H -0.268 1.268 30 H 0.060 0.940 31 H 0.080 0.920 32 H 0.042 0.958 33 H 0.066 0.934 34 H 0.113 0.887 35 H 0.097 0.903 36 H 0.123 0.877 37 H 0.168 0.832 38 H 0.171 0.829 39 H 0.431 0.569 40 H 0.437 0.563 41 H 0.081 0.919 42 H 0.047 0.953 43 H 0.036 0.964 44 H 0.028 0.972 45 H 0.360 0.640 46 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.582 -4.488 32.797 33.203 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.100 4.100 3 H 0.095 0.905 4 C -0.162 4.162 5 C -0.028 4.028 6 N -0.327 5.327 7 C 0.276 3.724 8 O -0.467 6.467 9 C -0.037 4.037 10 N -0.215 5.215 11 C 0.112 3.888 12 O -0.234 6.234 13 N -0.182 5.182 14 N -0.187 5.187 15 C 0.115 3.885 16 O -0.240 6.240 17 C 0.000 4.000 18 C -0.114 4.114 19 H 0.075 0.925 20 C 0.033 3.967 21 N -0.408 5.408 22 C -0.361 4.361 23 H 0.084 0.916 24 C -0.244 4.244 25 N -0.629 5.629 26 Si 0.771 3.229 27 H -0.214 1.214 28 H -0.216 1.216 29 H -0.193 1.193 30 H 0.079 0.921 31 H 0.099 0.901 32 H 0.061 0.939 33 H 0.084 0.916 34 H 0.131 0.869 35 H 0.115 0.885 36 H 0.141 0.859 37 H 0.186 0.814 38 H 0.188 0.812 39 H 0.293 0.707 40 H 0.301 0.699 41 H 0.099 0.901 42 H 0.066 0.934 43 H 0.054 0.946 44 H 0.046 0.954 45 H 0.193 0.807 46 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -1.782 -5.968 31.847 32.450 hybrid contribution 0.085 0.660 -1.161 1.338 sum -1.697 -5.308 30.685 31.187 Atomic orbital electron populations 1.21981 0.94133 1.02323 1.02426 1.21079 0.96812 0.99444 0.92688 0.90451 1.21960 1.01152 0.94918 0.98132 1.22345 1.02674 0.93942 0.83790 1.48193 1.55865 1.20034 1.08624 1.21391 0.77614 0.81687 0.91727 1.90827 1.55447 1.64997 1.35470 1.22182 1.02984 0.83694 0.94818 1.46665 1.07144 1.09162 1.58494 1.21320 0.87678 0.81496 0.98262 1.84848 1.10647 1.89214 1.38728 1.78229 0.94619 1.22480 1.22913 1.78231 1.14773 1.01481 1.24167 1.21310 0.79961 0.88928 0.98255 1.85025 1.51627 1.49267 1.38079 1.21462 1.00168 0.92511 0.85815 1.21614 0.99782 0.94292 0.95707 0.92481 1.20906 0.96344 0.95129 0.84291 1.42892 1.57480 1.37646 1.02774 1.19085 1.22358 1.10872 0.83743 0.91604 1.25276 1.02308 1.01840 0.94978 1.69833 1.50211 1.45017 0.97799 0.85632 0.79595 0.80525 0.77197 1.21353 1.21605 1.19317 0.92074 0.90107 0.93929 0.91566 0.86858 0.88498 0.85925 0.81437 0.81181 0.70687 0.69944 0.90107 0.93447 0.94596 0.95419 0.80743 0.93232 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.12 8.11 71.98 0.58 -1.53 16 2 C -0.08 -1.27 2.71 -10.76 -0.03 -1.30 16 3 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 4 C -0.12 -0.92 5.62 30.67 0.17 -0.75 16 5 C 0.09 0.53 5.87 86.36 0.51 1.04 16 6 N -0.59 -10.21 2.97 -818.91 -2.43 -12.65 16 7 C 0.49 10.00 7.77 87.66 0.68 10.68 16 8 O -0.59 -20.14 15.84 -3.03 -0.05 -20.19 16 9 C 0.09 0.82 4.84 85.63 0.41 1.24 16 10 N -0.49 -9.04 2.25 -759.26 -1.71 -10.74 16 11 C 0.42 9.29 9.15 179.71 1.65 10.93 16 12 O -0.43 -6.40 13.58 -89.37 -1.21 -7.62 16 13 N -0.34 -10.00 12.72 -173.66 -2.21 -12.21 16 14 N -0.34 -10.20 12.72 -173.66 -2.21 -12.40 16 15 C 0.43 9.56 9.15 179.72 1.65 11.21 16 16 O -0.44 -6.92 13.58 -89.41 -1.21 -8.13 16 17 C 0.12 3.29 5.05 86.36 0.44 3.72 16 18 C -0.09 -2.47 2.15 -10.71 -0.02 -2.49 16 19 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 20 C 0.16 5.76 5.19 86.38 0.45 6.20 16 21 N -0.76 -36.75 5.18 -343.44 -1.78 -38.53 16 22 C -0.23 -13.41 10.47 84.03 0.88 -12.53 16 23 H 0.07 4.11 8.06 -2.91 -0.02 4.09 16 24 C -0.05 -3.18 5.50 84.86 0.47 -2.71 16 25 N -0.98 -64.12 13.97 21.65 0.30 -63.82 16 26 Si 0.94 49.75 27.74 68.60 1.90 51.65 16 27 H -0.29 -15.22 7.11 99.48 0.71 -14.51 16 28 H -0.29 -15.20 7.11 99.48 0.71 -14.50 16 29 H -0.27 -13.50 6.52 99.48 0.65 -12.85 16 30 H 0.06 0.80 4.98 -2.39 -0.01 0.79 16 31 H 0.08 0.72 8.14 -2.39 -0.02 0.70 16 32 H 0.04 0.80 6.58 -2.38 -0.02 0.79 16 33 H 0.07 0.58 8.14 -2.39 -0.02 0.56 16 34 H 0.11 0.20 8.14 -2.38 -0.02 0.18 16 35 H 0.10 0.34 6.69 -2.38 -0.02 0.32 16 36 H 0.12 -0.32 5.93 -2.39 -0.01 -0.33 16 37 H 0.17 0.15 7.69 -2.39 -0.02 0.13 16 38 H 0.17 0.23 7.94 -2.39 -0.02 0.21 16 39 H 0.43 3.60 9.06 -74.06 -0.67 2.93 16 40 H 0.44 0.68 9.06 -74.05 -0.67 0.01 16 41 H 0.08 2.04 6.69 -2.39 -0.02 2.02 16 42 H 0.05 1.75 6.22 -2.39 -0.01 1.74 16 43 H 0.04 1.29 6.73 -2.39 -0.02 1.27 16 44 H 0.03 1.02 8.14 -2.38 -0.02 1.00 16 45 H 0.36 17.56 4.76 -92.71 -0.44 17.12 16 46 H 0.26 16.21 8.31 -92.71 -0.77 15.44 16 Total: -1.00 -97.35 370.42 -3.55 -100.91 By element: Atomic # 1 Polarization: 10.79 SS G_CDS: -0.77 Total: 10.02 kcal Atomic # 6 Polarization: 15.88 SS G_CDS: 7.83 Total: 23.71 kcal Atomic # 7 Polarization: -140.31 SS G_CDS: -10.03 Total: -150.35 kcal Atomic # 8 Polarization: -33.46 SS G_CDS: -2.48 Total: -35.94 kcal Atomic # 14 Polarization: 49.75 SS G_CDS: 1.90 Total: 51.65 kcal Total: -97.35 -3.55 -100.91 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001133270509.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.268 kcal (2) G-P(sol) polarization free energy of solvation -97.352 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.084 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.553 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -100.906 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.638 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds