Wall clock time and date at job start Tue Mar 31 2020 22:24:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09003 * 109.45664 * 2 1 4 4 C 1.53033 * 109.45116 * 240.03942 * 2 1 3 5 5 C 1.53192 * 109.30947 * 301.35039 * 4 2 1 6 6 N 1.46931 * 108.77388 * 305.36429 * 5 4 2 7 7 C 1.34782 * 120.63034 * 233.58378 * 6 5 4 8 8 O 1.21278 * 119.99623 * 179.97438 * 7 6 5 9 9 C 1.50696 * 120.00040 * 0.02562 * 7 6 5 10 10 N 1.46493 * 109.47208 * 179.97438 * 9 7 6 11 11 C 1.36379 * 125.96228 * 269.68727 * 10 9 7 12 12 O 1.35618 * 125.99075 * 0.04152 * 11 10 9 13 13 N 1.30919 * 108.02092 * 179.88588 * 11 10 9 14 14 N 1.40112 * 107.93943 * 0.37484 * 13 11 10 15 15 C 1.30905 * 107.94099 * 359.76419 * 14 13 11 16 16 O 1.35627 * 125.98854 * 179.97438 * 15 14 13 17 17 C 1.46923 * 118.73669 * 53.61111 * 6 5 4 18 18 C 1.53039 * 109.46201 * 119.97187 * 2 1 3 19 19 H 1.08997 * 109.50015 * 178.62816 * 18 2 1 20 20 C 1.53006 * 109.49657 * 298.69387 * 18 2 1 21 21 N 1.46498 * 109.46687 * 184.99667 * 20 18 2 22 22 C 1.36943 * 119.99784 * 179.97438 * 21 20 18 23 23 H 1.07997 * 120.00153 * 0.02562 * 22 21 20 24 24 C 1.38813 * 120.00041 * 179.97438 * 22 21 20 25 25 N 1.31618 * 120.00017 * 0.02562 * 24 22 21 26 26 Si 1.86798 * 120.00107 * 180.02562 * 24 22 21 27 27 H 1.48499 * 109.47132 * 359.97438 * 26 24 22 28 28 H 1.48495 * 109.47161 * 120.00112 * 26 24 22 29 29 H 1.48501 * 109.47165 * 240.00189 * 26 24 22 30 30 H 1.09005 * 109.47066 * 300.02570 * 1 2 3 31 31 H 1.09002 * 109.47109 * 60.02144 * 1 2 3 32 32 H 1.08999 * 109.46806 * 180.02562 * 1 2 3 33 33 H 1.09004 * 109.50199 * 61.29816 * 4 2 1 34 34 H 1.08999 * 109.49850 * 181.36580 * 4 2 1 35 35 H 1.08998 * 109.59258 * 65.15031 * 5 4 2 36 36 H 1.09001 * 109.58692 * 185.43898 * 5 4 2 37 37 H 1.09001 * 109.47288 * 300.00093 * 9 7 6 38 38 H 1.09005 * 109.47600 * 59.99425 * 9 7 6 39 39 H 0.96702 * 114.00441 * 89.99306 * 12 11 10 40 40 H 0.96703 * 114.00292 * 270.02473 * 16 15 14 41 41 H 1.09003 * 109.58391 * 186.60462 * 17 6 5 42 42 H 1.08997 * 109.58653 * 66.17980 * 17 6 5 43 43 H 1.08992 * 109.47046 * 304.99586 * 20 18 2 44 44 H 1.08997 * 109.47395 * 65.00126 * 20 18 2 45 45 H 0.97004 * 120.00552 * 359.97438 * 21 20 18 46 46 H 0.96998 * 120.00449 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8931 1.0278 0.0000 4 6 2.0396 -0.7206 -1.2502 5 6 1.4991 -2.1539 -1.2644 6 7 1.8621 -2.8088 -0.0002 7 6 2.5149 -3.9880 -0.0003 8 8 2.8094 -4.5181 1.0499 9 6 2.8800 -4.6469 -1.3055 10 7 3.5782 -5.9067 -1.0380 11 6 4.9259 -6.0613 -0.8978 12 8 5.8541 -5.0760 -0.9807 13 7 5.1664 -7.3271 -0.6657 14 7 3.9408 -8.0062 -0.6650 15 6 2.9945 -7.1305 -0.8917 16 8 1.6663 -7.3942 -0.9681 17 6 1.4993 -2.1541 1.2641 18 6 2.0399 -0.7209 1.2500 19 1 3.1296 -0.7426 1.2384 20 6 1.5571 0.0194 2.4990 21 7 2.1426 -0.6001 3.6905 22 6 1.8522 -0.1035 4.9332 23 1 1.1913 0.7445 5.0350 24 6 2.4066 -0.6907 6.0623 25 7 3.2117 -1.7245 5.9384 26 14 2.0099 -0.0137 7.7575 27 1 1.0880 1.1429 7.6253 28 1 1.3632 -1.0720 8.5742 29 1 3.2636 0.4265 8.4205 30 1 -0.3633 0.5143 0.8898 31 1 -0.3633 0.5135 -0.8902 32 1 -0.3633 -1.0277 0.0005 33 1 1.6955 -0.1932 -2.1399 34 1 3.1293 -0.7423 -1.2388 35 1 0.4141 -2.1344 -1.3673 36 1 1.9356 -2.7009 -2.1001 37 1 1.9739 -4.8475 -1.8772 38 1 3.5311 -3.9853 -1.8770 39 1 6.0492 -4.6472 -0.1362 40 1 1.3590 -7.6117 -1.8588 41 1 1.9380 -2.7019 2.0982 42 1 0.4144 -2.1345 1.3673 43 1 1.8646 1.0636 2.4441 44 1 0.4702 -0.0368 2.5573 45 1 2.7360 -1.3620 3.5992 46 1 3.5994 -2.1347 6.7273 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001133270511.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:24:20 Heat of formation + Delta-G solvation = -1.306876 kcal Electronic energy + Delta-G solvation = -30707.204427 eV Core-core repulsion = 26442.530722 eV Total energy + Delta-G solvation = -4264.673705 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -42.51677 -40.54044 -38.40278 -38.34527 -37.29912 -35.14737 -34.52844 -33.70324 -31.99911 -30.08417 -29.76260 -28.82022 -27.56642 -25.44266 -24.81724 -23.26970 -22.99461 -22.27950 -21.35502 -20.42510 -19.13148 -18.84140 -18.40947 -17.74070 -17.09012 -16.98356 -16.49843 -15.80052 -15.62365 -15.50771 -15.17446 -15.05617 -14.51034 -14.06590 -13.82543 -13.68011 -13.56962 -13.15233 -13.11169 -12.86267 -12.72646 -12.63829 -12.56896 -12.12828 -11.81312 -11.60232 -11.35602 -11.24288 -10.98555 -10.88244 -10.80319 -10.76257 -10.75154 -10.36839 -10.32271 -10.00247 -9.75682 -9.64412 -9.60663 -8.90030 -8.70895 -6.93702 -5.76023 -3.06216 1.21727 1.51871 2.04185 2.28175 2.71856 3.02747 3.43317 3.48198 3.51216 3.51276 3.98929 4.05744 4.39564 4.46442 4.56642 4.64352 4.75481 4.96846 4.98312 5.00931 5.07634 5.09500 5.38771 5.43245 5.48660 5.52100 5.57945 5.66616 5.71274 5.79872 5.83976 5.89272 6.01156 6.18525 6.21691 6.23370 6.39511 6.47212 6.67516 6.78698 6.78720 7.04992 7.18170 7.69314 7.69367 7.89201 8.41506 9.52763 10.09565 10.43234 11.46304 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.010654 B = 0.003331 C = 0.002786 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2627.387070 B = 8405.015010 C =10048.746606 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.086 4.086 3 H 0.075 0.925 4 C -0.129 4.129 5 C 0.102 3.898 6 N -0.603 5.603 7 C 0.493 3.507 8 O -0.513 6.513 9 C 0.084 3.916 10 N -0.498 5.498 11 C 0.418 3.582 12 O -0.440 6.440 13 N -0.293 5.293 14 N -0.295 5.295 15 C 0.416 3.584 16 O -0.432 6.432 17 C 0.120 3.880 18 C -0.101 4.101 19 H 0.073 0.927 20 C 0.161 3.839 21 N -0.733 5.733 22 C -0.244 4.244 23 H 0.070 0.930 24 C -0.011 4.011 25 N -0.929 5.929 26 Si 0.906 3.094 27 H -0.280 1.280 28 H -0.291 1.291 29 H -0.291 1.291 30 H 0.064 0.936 31 H 0.051 0.949 32 H 0.056 0.944 33 H 0.076 0.924 34 H 0.068 0.932 35 H 0.077 0.923 36 H 0.077 0.923 37 H 0.123 0.877 38 H 0.128 0.872 39 H 0.418 0.582 40 H 0.408 0.592 41 H 0.103 0.897 42 H 0.072 0.928 43 H 0.021 0.979 44 H 0.023 0.977 45 H 0.384 0.616 46 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.254 -1.640 -24.876 25.291 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.105 4.105 3 H 0.094 0.906 4 C -0.167 4.167 5 C -0.021 4.021 6 N -0.337 5.337 7 C 0.278 3.722 8 O -0.387 6.387 9 C -0.044 4.044 10 N -0.218 5.218 11 C 0.108 3.892 12 O -0.241 6.241 13 N -0.137 5.137 14 N -0.139 5.139 15 C 0.106 3.894 16 O -0.231 6.231 17 C -0.001 4.001 18 C -0.121 4.121 19 H 0.092 0.908 20 C 0.032 3.968 21 N -0.378 5.378 22 C -0.375 4.375 23 H 0.088 0.912 24 C -0.208 4.208 25 N -0.577 5.577 26 Si 0.737 3.263 27 H -0.206 1.206 28 H -0.218 1.218 29 H -0.219 1.219 30 H 0.083 0.917 31 H 0.070 0.930 32 H 0.075 0.925 33 H 0.094 0.906 34 H 0.086 0.914 35 H 0.095 0.905 36 H 0.095 0.905 37 H 0.141 0.859 38 H 0.146 0.854 39 H 0.278 0.722 40 H 0.266 0.734 41 H 0.122 0.878 42 H 0.090 0.910 43 H 0.039 0.961 44 H 0.041 0.959 45 H 0.218 0.782 46 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -3.404 -3.215 -23.859 24.314 hybrid contribution -0.862 1.733 0.671 2.049 sum -4.266 -1.481 -23.188 23.623 Atomic orbital electron populations 1.21996 0.95118 1.01961 1.01993 1.21081 0.96102 0.99545 0.93730 0.90617 1.21947 1.01234 0.94740 0.98808 1.21849 1.00927 0.94130 0.85203 1.48144 1.56853 1.20379 1.08316 1.20525 0.79113 0.81764 0.90831 1.90871 1.52671 1.62694 1.32490 1.21778 1.00247 0.84984 0.97365 1.46622 1.07290 1.08881 1.59002 1.21285 0.78455 0.89827 0.99592 1.84849 1.53082 1.48322 1.37836 1.78377 1.13901 1.00592 1.20820 1.78347 0.93394 1.20375 1.21780 1.21228 0.86315 0.81743 1.00089 1.85044 1.13741 1.89002 1.35299 1.21822 1.00201 0.93005 0.85095 1.21691 1.00848 0.94192 0.95359 0.90818 1.20678 0.96017 0.94770 0.85291 1.42419 1.56881 1.37663 1.00856 1.19230 1.23423 1.11099 0.83729 0.91169 1.24758 0.99931 0.98222 0.97875 1.69673 1.35351 1.24178 1.28535 0.86143 0.77432 0.77980 0.84764 1.20569 1.21824 1.21853 0.91662 0.93037 0.92500 0.90565 0.91357 0.90494 0.90514 0.85882 0.85390 0.72202 0.73407 0.87849 0.91016 0.96086 0.95925 0.78207 0.93468 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.45 8.11 37.16 0.30 -1.15 16 2 C -0.09 -0.87 2.71 -90.58 -0.25 -1.12 16 3 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 4 C -0.13 -0.94 5.62 -26.61 -0.15 -1.09 16 5 C 0.10 0.68 5.87 -3.71 -0.02 0.66 16 6 N -0.60 -6.74 2.97 -172.77 -0.51 -7.26 16 7 C 0.49 6.21 7.77 -10.99 -0.09 6.13 16 8 O -0.51 -9.49 15.84 5.56 0.09 -9.40 16 9 C 0.08 0.66 4.84 -5.20 -0.03 0.64 16 10 N -0.50 -5.59 2.25 -121.35 -0.27 -5.86 16 11 C 0.42 5.34 9.15 -88.79 -0.81 4.53 16 12 O -0.44 -4.37 13.57 -18.55 -0.25 -4.62 16 13 N -0.29 -4.57 12.72 29.66 0.38 -4.20 16 14 N -0.30 -4.55 12.72 29.66 0.38 -4.17 16 15 C 0.42 5.17 9.15 -88.81 -0.81 4.36 16 16 O -0.43 -3.96 13.58 -18.58 -0.25 -4.21 16 17 C 0.12 1.79 5.05 -3.71 -0.02 1.77 16 18 C -0.10 -1.47 2.15 -90.50 -0.19 -1.66 16 19 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 20 C 0.16 3.02 5.19 -4.04 -0.02 3.00 16 21 N -0.73 -18.29 5.38 -59.91 -0.32 -18.61 16 22 C -0.24 -6.80 9.99 -15.06 -0.15 -6.96 16 23 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16 24 C -0.01 -0.33 5.50 -17.43 -0.10 -0.43 16 25 N -0.93 -28.69 13.06 55.49 0.72 -27.96 16 26 Si 0.91 22.61 29.55 -169.99 -5.02 17.58 16 27 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 28 H -0.29 -7.34 7.11 56.52 0.40 -6.93 16 29 H -0.29 -7.31 7.11 56.52 0.40 -6.90 16 30 H 0.06 0.72 6.58 -51.93 -0.34 0.38 16 31 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 32 H 0.06 0.53 4.98 -51.93 -0.26 0.27 16 33 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 34 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 35 H 0.08 0.46 6.69 -51.93 -0.35 0.11 16 36 H 0.08 0.28 5.95 -51.93 -0.31 -0.03 16 37 H 0.12 0.53 7.94 -51.93 -0.41 0.12 16 38 H 0.13 0.67 7.69 -51.93 -0.40 0.27 16 39 H 0.42 2.89 9.06 45.56 0.41 3.30 16 40 H 0.41 0.99 9.06 45.56 0.41 1.40 16 41 H 0.10 2.05 6.22 -51.93 -0.32 1.73 16 42 H 0.07 1.05 6.69 -51.93 -0.35 0.70 16 43 H 0.02 0.41 8.14 -51.93 -0.42 -0.02 16 44 H 0.02 0.43 6.73 -51.93 -0.35 0.08 16 45 H 0.38 10.29 6.90 -40.82 -0.28 10.01 16 46 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 LS Contribution 373.55 15.07 5.63 5.63 Total: -1.00 -39.88 373.55 -6.40 -46.28 By element: Atomic # 1 Polarization: 12.74 SS G_CDS: -4.63 Total: 8.11 kcal Atomic # 6 Polarization: 11.02 SS G_CDS: -2.33 Total: 8.69 kcal Atomic # 7 Polarization: -68.43 SS G_CDS: 0.37 Total: -68.06 kcal Atomic # 8 Polarization: -17.82 SS G_CDS: -0.42 Total: -18.24 kcal Atomic # 14 Polarization: 22.61 SS G_CDS: -5.02 Total: 17.58 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -39.88 -6.40 -46.28 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001133270511.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.971 kcal (2) G-P(sol) polarization free energy of solvation -39.880 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.091 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.398 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.278 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.307 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds