Wall clock time and date at job start Tue Mar 31 2020 22:24:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09003 * 109.45664 * 2 1 4 4 C 1.53033 * 109.45116 * 240.03942 * 2 1 3 5 5 C 1.53192 * 109.30947 * 301.35039 * 4 2 1 6 6 N 1.46931 * 108.77388 * 305.36429 * 5 4 2 7 7 C 1.34782 * 120.63034 * 233.58378 * 6 5 4 8 8 O 1.21278 * 119.99623 * 179.97438 * 7 6 5 9 9 C 1.50696 * 120.00040 * 0.02562 * 7 6 5 10 10 N 1.46493 * 109.47208 * 179.97438 * 9 7 6 11 11 C 1.36379 * 125.96228 * 269.68727 * 10 9 7 12 12 O 1.35618 * 125.99075 * 0.04152 * 11 10 9 13 13 N 1.30919 * 108.02092 * 179.88588 * 11 10 9 14 14 N 1.40112 * 107.93943 * 0.37484 * 13 11 10 15 15 C 1.30905 * 107.94099 * 359.76419 * 14 13 11 16 16 O 1.35627 * 125.98854 * 179.97438 * 15 14 13 17 17 C 1.46923 * 118.73669 * 53.61111 * 6 5 4 18 18 C 1.53039 * 109.46201 * 119.97187 * 2 1 3 19 19 H 1.08997 * 109.50015 * 178.62816 * 18 2 1 20 20 C 1.53006 * 109.49657 * 298.69387 * 18 2 1 21 21 N 1.46498 * 109.46687 * 184.99667 * 20 18 2 22 22 C 1.36943 * 119.99784 * 179.97438 * 21 20 18 23 23 H 1.07997 * 120.00153 * 0.02562 * 22 21 20 24 24 C 1.38813 * 120.00041 * 179.97438 * 22 21 20 25 25 N 1.31618 * 120.00017 * 0.02562 * 24 22 21 26 26 Si 1.86798 * 120.00107 * 180.02562 * 24 22 21 27 27 H 1.48499 * 109.47132 * 359.97438 * 26 24 22 28 28 H 1.48495 * 109.47161 * 120.00112 * 26 24 22 29 29 H 1.48501 * 109.47165 * 240.00189 * 26 24 22 30 30 H 1.09005 * 109.47066 * 300.02570 * 1 2 3 31 31 H 1.09002 * 109.47109 * 60.02144 * 1 2 3 32 32 H 1.08999 * 109.46806 * 180.02562 * 1 2 3 33 33 H 1.09004 * 109.50199 * 61.29816 * 4 2 1 34 34 H 1.08999 * 109.49850 * 181.36580 * 4 2 1 35 35 H 1.08998 * 109.59258 * 65.15031 * 5 4 2 36 36 H 1.09001 * 109.58692 * 185.43898 * 5 4 2 37 37 H 1.09001 * 109.47288 * 300.00093 * 9 7 6 38 38 H 1.09005 * 109.47600 * 59.99425 * 9 7 6 39 39 H 0.96702 * 114.00441 * 89.99306 * 12 11 10 40 40 H 0.96703 * 114.00292 * 270.02473 * 16 15 14 41 41 H 1.09003 * 109.58391 * 186.60462 * 17 6 5 42 42 H 1.08997 * 109.58653 * 66.17980 * 17 6 5 43 43 H 1.08992 * 109.47046 * 304.99586 * 20 18 2 44 44 H 1.08997 * 109.47395 * 65.00126 * 20 18 2 45 45 H 0.97004 * 120.00552 * 359.97438 * 21 20 18 46 46 H 0.96998 * 120.00449 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8931 1.0278 0.0000 4 6 2.0396 -0.7206 -1.2502 5 6 1.4991 -2.1539 -1.2644 6 7 1.8621 -2.8088 -0.0002 7 6 2.5149 -3.9880 -0.0003 8 8 2.8094 -4.5181 1.0499 9 6 2.8800 -4.6469 -1.3055 10 7 3.5782 -5.9067 -1.0380 11 6 4.9259 -6.0613 -0.8978 12 8 5.8541 -5.0760 -0.9807 13 7 5.1664 -7.3271 -0.6657 14 7 3.9408 -8.0062 -0.6650 15 6 2.9945 -7.1305 -0.8917 16 8 1.6663 -7.3942 -0.9681 17 6 1.4993 -2.1541 1.2641 18 6 2.0399 -0.7209 1.2500 19 1 3.1296 -0.7426 1.2384 20 6 1.5571 0.0194 2.4990 21 7 2.1426 -0.6001 3.6905 22 6 1.8522 -0.1035 4.9332 23 1 1.1913 0.7445 5.0350 24 6 2.4066 -0.6907 6.0623 25 7 3.2117 -1.7245 5.9384 26 14 2.0099 -0.0137 7.7575 27 1 1.0880 1.1429 7.6253 28 1 1.3632 -1.0720 8.5742 29 1 3.2636 0.4265 8.4205 30 1 -0.3633 0.5143 0.8898 31 1 -0.3633 0.5135 -0.8902 32 1 -0.3633 -1.0277 0.0005 33 1 1.6955 -0.1932 -2.1399 34 1 3.1293 -0.7423 -1.2388 35 1 0.4141 -2.1344 -1.3673 36 1 1.9356 -2.7009 -2.1001 37 1 1.9739 -4.8475 -1.8772 38 1 3.5311 -3.9853 -1.8770 39 1 6.0492 -4.6472 -0.1362 40 1 1.3590 -7.6117 -1.8588 41 1 1.9380 -2.7019 2.0982 42 1 0.4144 -2.1345 1.3673 43 1 1.8646 1.0636 2.4441 44 1 0.4702 -0.0368 2.5573 45 1 2.7360 -1.3620 3.5992 46 1 3.5994 -2.1347 6.7273 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001133270511.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:24:19 Heat of formation + Delta-G solvation = -39.329332 kcal Electronic energy + Delta-G solvation = -30708.853204 eV Core-core repulsion = 26442.530722 eV Total energy + Delta-G solvation = -4266.322482 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -43.41517 -41.49873 -39.40167 -39.18099 -38.08611 -36.68952 -35.48510 -34.91373 -33.51248 -31.62407 -30.72377 -29.66590 -28.58765 -26.91041 -25.67723 -24.92277 -23.90749 -23.16345 -22.59591 -21.42924 -19.90591 -19.85109 -19.37790 -18.94885 -18.55121 -17.87364 -17.42477 -16.84559 -16.66754 -16.52558 -16.37831 -16.11807 -15.70737 -15.33104 -15.17477 -14.71761 -14.63587 -14.37105 -14.21055 -13.94565 -13.79262 -13.49217 -13.40819 -13.07886 -12.98869 -12.91252 -12.65103 -12.56035 -12.44979 -12.13073 -12.01352 -11.93523 -11.79501 -11.73905 -11.63261 -11.34592 -11.21578 -10.96934 -10.70690 -10.57774 -9.66906 -9.03544 -7.98493 -5.28444 0.32800 0.73147 1.10378 1.37220 1.43005 1.44541 1.54649 1.83632 2.18178 2.52412 2.79229 3.23979 3.35391 3.42000 3.68812 3.80043 3.85480 3.94540 4.08263 4.10921 4.17571 4.21421 4.29643 4.39067 4.53668 4.57232 4.62992 4.71961 4.77827 4.83070 4.91613 5.00530 5.09576 5.17332 5.21836 5.26143 5.31960 5.41386 5.45047 5.48232 5.62408 6.13933 6.22558 6.27910 6.42270 6.75169 6.97878 7.28377 8.05537 8.26349 9.25085 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.010654 B = 0.003331 C = 0.002786 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2627.387070 B = 8405.015010 C =10048.746606 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.081 4.081 3 H 0.077 0.923 4 C -0.124 4.124 5 C 0.093 3.907 6 N -0.595 5.595 7 C 0.487 3.513 8 O -0.586 6.586 9 C 0.090 3.910 10 N -0.495 5.495 11 C 0.422 3.578 12 O -0.433 6.433 13 N -0.338 5.338 14 N -0.342 5.342 15 C 0.428 3.572 16 O -0.434 6.434 17 C 0.130 3.870 18 C -0.088 4.088 19 H 0.052 0.948 20 C 0.157 3.843 21 N -0.748 5.748 22 C -0.244 4.244 23 H 0.079 0.921 24 C -0.078 4.078 25 N -0.972 5.972 26 Si 0.974 3.026 27 H -0.261 1.261 28 H -0.296 1.296 29 H -0.293 1.293 30 H 0.042 0.958 31 H 0.081 0.919 32 H 0.057 0.943 33 H 0.114 0.886 34 H 0.065 0.935 35 H 0.095 0.905 36 H 0.123 0.877 37 H 0.172 0.828 38 H 0.167 0.833 39 H 0.430 0.570 40 H 0.438 0.562 41 H 0.044 0.956 42 H 0.073 0.927 43 H 0.022 0.978 44 H 0.028 0.972 45 H 0.370 0.630 46 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.101 0.245 -28.522 29.168 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.100 4.100 3 H 0.095 0.905 4 C -0.161 4.161 5 C -0.028 4.028 6 N -0.328 5.328 7 C 0.274 3.726 8 O -0.466 6.466 9 C -0.036 4.036 10 N -0.215 5.215 11 C 0.111 3.889 12 O -0.236 6.236 13 N -0.182 5.182 14 N -0.186 5.186 15 C 0.117 3.883 16 O -0.238 6.238 17 C 0.007 3.993 18 C -0.108 4.108 19 H 0.071 0.929 20 C 0.031 3.969 21 N -0.391 5.391 22 C -0.376 4.376 23 H 0.097 0.903 24 C -0.270 4.270 25 N -0.623 5.623 26 Si 0.803 3.197 27 H -0.185 1.185 28 H -0.223 1.223 29 H -0.220 1.220 30 H 0.061 0.939 31 H 0.100 0.900 32 H 0.076 0.924 33 H 0.132 0.868 34 H 0.084 0.916 35 H 0.113 0.887 36 H 0.141 0.859 37 H 0.190 0.810 38 H 0.184 0.816 39 H 0.292 0.708 40 H 0.301 0.699 41 H 0.063 0.937 42 H 0.091 0.909 43 H 0.040 0.960 44 H 0.046 0.954 45 H 0.201 0.799 46 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -5.312 -1.254 -27.604 28.138 hybrid contribution -0.394 1.256 1.745 2.185 sum -5.706 0.002 -25.859 26.481 Atomic orbital electron populations 1.21970 0.94171 1.02167 1.02420 1.21084 0.96792 0.99388 0.92764 0.90465 1.21958 1.01134 0.94883 0.98167 1.22333 1.02569 0.94030 0.83853 1.48190 1.55959 1.20037 1.08582 1.21423 0.77895 0.81569 0.91735 1.90856 1.55561 1.64644 1.35525 1.22170 1.02850 0.83810 0.94748 1.46664 1.06737 1.09591 1.58467 1.21347 0.79493 0.89740 0.98335 1.84827 1.52528 1.47574 1.38719 1.78232 1.14842 1.02307 1.22822 1.78210 0.94134 1.22062 1.24209 1.21285 0.86968 0.81869 0.98166 1.85015 1.11734 1.88940 1.38097 1.21358 0.99552 0.92706 0.85690 1.21533 0.99434 0.94065 0.95725 0.92937 1.20895 0.95907 0.94885 0.85218 1.42691 1.56889 1.37453 1.02062 1.19697 1.22250 1.10587 0.85052 0.90310 1.25624 1.00571 0.98945 1.01876 1.69860 1.37296 1.26101 1.29063 0.85066 0.77240 0.77621 0.79807 1.18496 1.22296 1.22015 0.93890 0.89983 0.92375 0.86794 0.91626 0.88661 0.85909 0.81024 0.81596 0.70773 0.69904 0.93747 0.90933 0.95963 0.95379 0.79872 0.94186 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.35 8.11 71.98 0.58 -1.76 16 2 C -0.08 -1.43 2.71 -10.77 -0.03 -1.46 16 3 H 0.08 1.37 8.14 -2.39 -0.02 1.36 16 4 C -0.12 -1.18 5.62 30.67 0.17 -1.00 16 5 C 0.09 0.76 5.87 86.36 0.51 1.26 16 6 N -0.60 -12.16 2.97 -818.91 -2.43 -14.60 16 7 C 0.49 11.61 7.77 87.66 0.68 12.30 16 8 O -0.59 -22.64 15.84 -3.02 -0.05 -22.69 16 9 C 0.09 1.06 4.84 85.63 0.41 1.48 16 10 N -0.49 -10.25 2.25 -759.28 -1.71 -11.96 16 11 C 0.42 10.58 9.15 179.71 1.65 12.22 16 12 O -0.43 -8.20 13.57 -89.30 -1.21 -9.41 16 13 N -0.34 -10.84 12.72 -173.65 -2.21 -13.05 16 14 N -0.34 -10.76 12.72 -173.66 -2.21 -12.97 16 15 C 0.43 10.23 9.15 179.71 1.65 11.87 16 16 O -0.43 -7.08 13.58 -89.40 -1.21 -8.29 16 17 C 0.13 3.98 5.05 86.36 0.44 4.41 16 18 C -0.09 -2.55 2.15 -10.72 -0.02 -2.57 16 19 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 20 C 0.16 6.04 5.19 86.38 0.45 6.49 16 21 N -0.75 -38.95 5.38 -343.46 -1.85 -40.79 16 22 C -0.24 -13.94 9.99 84.03 0.84 -13.11 16 23 H 0.08 4.27 7.83 -2.91 -0.02 4.25 16 24 C -0.08 -4.65 5.50 84.86 0.47 -4.19 16 25 N -0.97 -62.74 13.06 21.65 0.28 -62.46 16 26 Si 0.97 47.51 29.55 68.60 2.03 49.54 16 27 H -0.26 -11.73 7.11 99.48 0.71 -11.03 16 28 H -0.30 -14.52 7.11 99.48 0.71 -13.82 16 29 H -0.29 -14.25 7.11 99.48 0.71 -13.55 16 30 H 0.04 0.86 6.58 -2.38 -0.02 0.85 16 31 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 32 H 0.06 0.90 4.98 -2.39 -0.01 0.88 16 33 H 0.11 0.39 8.14 -2.38 -0.02 0.37 16 34 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 35 H 0.10 0.55 6.69 -2.39 -0.02 0.54 16 36 H 0.12 -0.04 5.95 -2.39 -0.01 -0.05 16 37 H 0.17 0.40 7.94 -2.39 -0.02 0.38 16 38 H 0.17 0.78 7.69 -2.38 -0.02 0.76 16 39 H 0.43 5.86 9.06 -74.06 -0.67 5.19 16 40 H 0.44 0.75 9.06 -74.06 -0.67 0.07 16 41 H 0.04 1.91 6.22 -2.39 -0.01 1.89 16 42 H 0.07 2.15 6.69 -2.39 -0.02 2.14 16 43 H 0.02 0.86 8.14 -2.39 -0.02 0.84 16 44 H 0.03 1.07 6.73 -2.39 -0.02 1.05 16 45 H 0.37 21.16 6.90 -92.71 -0.64 20.52 16 46 H 0.25 15.64 8.31 -92.71 -0.77 14.87 16 Total: -1.00 -96.30 373.55 -3.69 -100.00 By element: Atomic # 1 Polarization: 21.65 SS G_CDS: -0.91 Total: 20.74 kcal Atomic # 6 Polarization: 18.16 SS G_CDS: 7.79 Total: 25.95 kcal Atomic # 7 Polarization: -145.71 SS G_CDS: -10.12 Total: -155.83 kcal Atomic # 8 Polarization: -37.92 SS G_CDS: -2.47 Total: -40.39 kcal Atomic # 14 Polarization: 47.51 SS G_CDS: 2.03 Total: 49.54 kcal Total: -96.30 -3.69 -100.00 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001133270511.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.668 kcal (2) G-P(sol) polarization free energy of solvation -96.303 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.635 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.694 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -99.998 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.329 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds