Wall clock time and date at job start Tue Mar 31 2020 22:54:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09005 * 109.46685 * 2 1 4 4 C 1.53001 * 109.46980 * 240.01163 * 2 1 3 5 5 C 1.52997 * 109.46997 * 174.99708 * 4 2 1 6 6 H 1.09001 * 109.47502 * 55.00061 * 5 4 2 7 7 C 1.53006 * 109.47127 * 174.99904 * 5 4 2 8 8 N 1.46500 * 109.47007 * 294.99685 * 5 4 2 9 9 C 1.34773 * 119.99910 * 155.00372 * 8 5 4 10 10 O 1.21288 * 120.00271 * 359.97438 * 9 8 5 11 11 C 1.50699 * 119.99928 * 179.97438 * 9 8 5 12 12 C 1.53002 * 109.47295 * 179.97438 * 11 9 8 13 13 C 1.50699 * 109.47295 * 180.02562 * 12 11 9 14 14 N 1.31966 * 120.41523 * 90.00140 * 13 12 11 15 15 N 1.28703 * 120.53747 * 179.97438 * 14 13 12 16 16 C 1.32519 * 121.45643 * 359.97438 * 15 14 13 17 17 O 1.35458 * 119.60014 * 179.97438 * 16 15 14 18 18 N 1.32520 * 120.80168 * 0.02562 * 16 15 14 19 19 C 1.32889 * 119.38078 * 359.73676 * 18 16 15 20 20 O 1.35523 * 120.67354 * 180.27205 * 19 18 16 21 21 N 1.46490 * 109.47378 * 120.00462 * 2 1 3 22 22 C 1.36931 * 120.00285 * 274.99839 * 21 2 1 23 23 H 1.07993 * 120.00221 * 0.02562 * 22 21 2 24 24 C 1.38821 * 120.00059 * 179.97438 * 22 21 2 25 25 N 1.31615 * 119.99860 * 0.02562 * 24 22 21 26 26 Si 1.86796 * 119.99945 * 180.02562 * 24 22 21 27 27 H 1.48500 * 109.47149 * 90.00107 * 26 24 22 28 28 H 1.48500 * 109.47375 * 210.00226 * 26 24 22 29 29 H 1.48503 * 109.47188 * 330.00260 * 26 24 22 30 30 H 1.08994 * 109.46862 * 299.98737 * 1 2 3 31 31 H 1.08993 * 109.47399 * 59.99735 * 1 2 3 32 32 H 1.09000 * 109.46373 * 179.97438 * 1 2 3 33 33 H 1.08993 * 109.47331 * 54.99412 * 4 2 1 34 34 H 1.09002 * 109.46801 * 294.99525 * 4 2 1 35 35 H 1.09001 * 109.47002 * 299.99574 * 7 5 4 36 36 H 1.08993 * 109.46955 * 60.00011 * 7 5 4 37 37 H 1.09000 * 109.47050 * 179.97438 * 7 5 4 38 38 H 0.96995 * 120.00293 * 334.99551 * 8 5 4 39 39 H 1.09000 * 109.47712 * 299.99892 * 11 9 8 40 40 H 1.08995 * 109.47183 * 60.00106 * 11 9 8 41 41 H 1.09001 * 109.47011 * 299.99877 * 12 11 9 42 42 H 1.08999 * 109.47215 * 59.99859 * 12 11 9 43 43 H 0.96699 * 114.00169 * 89.99949 * 17 16 15 44 44 H 0.96699 * 113.99734 * 270.23716 * 20 19 18 45 45 H 0.97006 * 119.99783 * 95.00992 * 21 2 1 46 46 H 0.96996 * 119.99884 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7210 -1.2494 5 6 3.5648 -0.6130 -1.3139 6 1 3.9955 -0.9921 -0.3871 7 6 4.0852 -1.4378 -2.4929 8 7 3.9478 0.7898 -1.4925 9 6 5.1611 1.2139 -1.0868 10 8 5.9356 0.4344 -0.5734 11 6 5.5553 2.6567 -1.2710 12 6 6.9700 2.8720 -0.7295 13 6 7.3640 4.3149 -0.9132 14 7 7.1090 5.2023 0.0297 15 7 7.4449 6.4351 -0.1245 16 6 8.0535 6.8537 -1.2247 17 8 8.3897 8.1601 -1.3476 18 7 8.3362 6.0099 -2.2067 19 6 8.0082 4.7284 -2.0798 20 8 8.2899 3.8418 -3.0653 21 7 2.0184 -0.6906 1.1960 22 6 2.1493 -0.0077 2.3756 23 1 1.8921 1.0400 2.4244 24 6 2.6116 -0.6624 3.5091 25 7 2.9246 -1.9394 3.4498 26 14 2.7894 0.2692 5.1184 27 1 1.5214 0.1778 5.8860 28 1 3.8937 -0.3242 5.9145 29 1 3.0944 1.6945 4.8343 30 1 -0.3633 0.5136 0.8901 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3632 -1.0277 -0.0005 33 1 1.6054 -0.2614 -2.1370 34 1 1.7517 -1.7713 -1.2059 35 1 3.8002 -2.4815 -2.3600 36 1 3.6546 -1.0587 -3.4196 37 1 5.1714 -1.3604 -2.5390 38 1 3.3284 1.4132 -1.9028 39 1 5.5296 2.9079 -2.3313 40 1 4.8582 3.2958 -0.7292 41 1 6.9953 2.6210 0.3309 42 1 7.6675 2.2328 -1.2709 43 1 9.2718 8.3724 -1.0130 44 1 7.5887 3.7511 -3.7249 45 1 2.2493 -1.6318 1.1523 46 1 3.2479 -2.3967 4.2417 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001134863256.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:54:50 Heat of formation + Delta-G solvation = -35.209465 kcal Electronic energy + Delta-G solvation = -29505.434991 eV Core-core repulsion = 25239.291160 eV Total energy + Delta-G solvation = -4266.143831 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.50103 -39.70744 -38.92435 -38.06507 -36.94873 -35.03487 -34.48798 -34.14140 -32.18093 -31.26495 -30.14070 -28.57955 -26.57050 -26.28851 -25.51404 -23.64100 -23.31011 -21.12278 -20.45949 -20.20428 -19.89728 -19.70659 -18.93497 -17.47509 -17.03358 -16.64158 -16.19870 -15.90642 -15.49422 -15.21887 -14.72626 -14.48829 -13.97597 -13.83529 -13.75970 -13.53075 -13.22550 -12.91178 -12.79333 -12.66627 -12.60398 -12.49428 -12.14844 -12.02143 -11.88669 -11.73557 -11.62733 -11.55900 -11.38928 -11.01761 -10.80272 -10.58859 -10.42732 -10.22414 -10.20218 -9.87958 -9.71783 -9.59479 -9.55017 -8.84882 -8.72664 -6.89451 -5.69993 -2.98022 -0.19137 0.06089 2.16688 2.49827 2.81434 2.88856 3.23086 3.48602 3.49255 3.54898 3.56073 3.88871 4.26266 4.49265 4.65440 4.65788 4.88990 4.92289 5.07191 5.18602 5.31228 5.41315 5.49365 5.64085 5.67840 5.71651 5.88537 5.91507 5.93738 6.01364 6.07815 6.13161 6.29038 6.34408 6.43991 6.56901 6.60384 6.69886 6.71812 6.80939 6.92746 7.07935 7.75652 7.75908 7.88339 8.48192 8.50640 9.59836 10.16767 10.50780 11.52705 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.010457 B = 0.002911 C = 0.002506 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2676.925366 B = 9615.852386 C =11172.452720 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.172 3.828 3 H 0.045 0.955 4 C -0.131 4.131 5 C 0.143 3.857 6 H 0.106 0.894 7 C -0.160 4.160 8 N -0.716 5.716 9 C 0.516 3.484 10 O -0.529 6.529 11 C -0.134 4.134 12 C -0.050 4.050 13 C 0.011 3.989 14 N -0.140 5.140 15 N -0.280 5.280 16 C 0.453 3.547 17 O -0.450 6.450 18 N -0.507 5.507 19 C 0.371 3.629 20 O -0.459 6.459 21 N -0.720 5.720 22 C -0.235 4.235 23 H 0.067 0.933 24 C -0.011 4.011 25 N -0.931 5.931 26 Si 0.902 3.098 27 H -0.292 1.292 28 H -0.292 1.292 29 H -0.282 1.282 30 H 0.052 0.948 31 H 0.033 0.967 32 H 0.045 0.955 33 H 0.060 0.940 34 H 0.075 0.925 35 H 0.063 0.937 36 H 0.048 0.952 37 H 0.056 0.944 38 H 0.394 0.606 39 H 0.086 0.914 40 H 0.100 0.900 41 H 0.108 0.892 42 H 0.106 0.894 43 H 0.418 0.582 44 H 0.417 0.583 45 H 0.383 0.617 46 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.605 12.653 -18.042 23.313 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.062 3.938 3 H 0.063 0.937 4 C -0.170 4.170 5 C 0.039 3.961 6 H 0.124 0.876 7 C -0.219 4.219 8 N -0.367 5.367 9 C 0.302 3.698 10 O -0.405 6.405 11 C -0.175 4.175 12 C -0.089 4.089 13 C -0.140 4.140 14 N 0.007 4.993 15 N -0.139 5.139 16 C 0.148 3.852 17 O -0.252 6.252 18 N -0.250 5.250 19 C 0.172 3.828 20 O -0.266 6.266 21 N -0.362 5.362 22 C -0.366 4.366 23 H 0.085 0.915 24 C -0.207 4.207 25 N -0.580 5.580 26 Si 0.733 3.267 27 H -0.219 1.219 28 H -0.218 1.218 29 H -0.207 1.207 30 H 0.071 0.929 31 H 0.052 0.948 32 H 0.064 0.936 33 H 0.079 0.921 34 H 0.093 0.907 35 H 0.082 0.918 36 H 0.068 0.932 37 H 0.075 0.925 38 H 0.227 0.773 39 H 0.105 0.895 40 H 0.118 0.882 41 H 0.127 0.873 42 H 0.124 0.876 43 H 0.278 0.722 44 H 0.278 0.722 45 H 0.216 0.784 46 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 8.037 13.038 -16.812 22.743 hybrid contribution 0.098 0.168 -0.135 0.237 sum 8.134 13.206 -16.948 22.974 Atomic orbital electron populations 1.22466 0.99624 1.00788 0.99737 1.20215 0.91513 0.95523 0.86575 0.93659 1.22169 0.93795 1.02221 0.98791 1.21037 0.95064 0.80109 0.99871 0.87575 1.22179 1.01455 1.00248 0.97979 1.45956 1.16377 1.11716 1.62644 1.20184 0.82168 0.89403 0.78082 1.90756 1.51046 1.56422 1.42316 1.21575 0.97417 0.95859 1.02661 1.20258 0.96482 0.86020 1.06181 1.24113 0.96317 1.00718 0.92858 1.73784 1.08795 0.94632 1.22117 1.73716 1.12530 1.08722 1.18893 1.21725 0.92023 0.86001 0.85499 1.84752 1.40118 1.16101 1.84231 1.68016 1.20387 1.03275 1.33277 1.19963 0.87953 0.85305 0.89547 1.84744 1.47254 1.56160 1.38452 1.42389 1.77962 1.10555 1.05262 1.19146 1.36458 0.93672 0.87322 0.91509 1.24689 1.02160 0.95927 0.97944 1.69643 1.50929 1.08644 1.28770 0.86263 0.77180 0.78984 0.84235 1.21917 1.21815 1.20746 0.92908 0.94782 0.93553 0.92140 0.90669 0.91772 0.93248 0.92523 0.77308 0.89529 0.88151 0.87322 0.87564 0.72180 0.72165 0.78364 0.93608 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.82 9.49 37.16 0.35 -2.47 16 2 C 0.17 3.13 2.84 -67.93 -0.19 2.94 16 3 H 0.05 0.84 7.56 -51.93 -0.39 0.45 16 4 C -0.13 -1.88 4.29 -26.73 -0.11 -2.00 16 5 C 0.14 2.14 2.52 -67.93 -0.17 1.97 16 6 H 0.11 2.15 7.05 -51.93 -0.37 1.79 16 7 C -0.16 -2.01 9.48 37.16 0.35 -1.66 16 8 N -0.72 -9.08 4.45 -53.80 -0.24 -9.32 16 9 C 0.52 7.17 7.79 -10.99 -0.09 7.08 16 10 O -0.53 -9.83 15.65 5.55 0.09 -9.75 16 11 C -0.13 -1.26 5.68 -27.88 -0.16 -1.42 16 12 C -0.05 -0.51 4.64 -27.88 -0.13 -0.64 16 13 C 0.01 0.11 6.15 -82.05 -0.50 -0.39 16 14 N -0.14 -1.76 11.55 33.78 0.39 -1.37 16 15 N -0.28 -3.44 11.58 29.17 0.34 -3.11 16 16 C 0.45 4.78 8.82 -90.90 -0.80 3.97 16 17 O -0.45 -3.62 13.64 -18.07 -0.25 -3.87 16 18 N -0.51 -5.26 10.59 -14.63 -0.15 -5.41 16 19 C 0.37 3.39 7.81 -16.61 -0.13 3.26 16 20 O -0.46 -3.03 12.73 -18.26 -0.23 -3.26 16 21 N -0.72 -17.28 4.49 -53.43 -0.24 -17.52 16 22 C -0.23 -6.43 9.93 -15.06 -0.15 -6.58 16 23 H 0.07 1.80 7.83 -52.49 -0.41 1.39 16 24 C -0.01 -0.32 5.50 -17.43 -0.10 -0.42 16 25 N -0.93 -28.30 13.06 55.49 0.72 -27.57 16 26 Si 0.90 22.88 29.55 -169.99 -5.02 17.85 16 27 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 28 H -0.29 -7.51 7.11 56.52 0.40 -7.11 16 29 H -0.28 -7.00 7.11 56.52 0.40 -6.60 16 30 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 31 H 0.03 0.47 8.14 -51.93 -0.42 0.04 16 32 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 33 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 35 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 36 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 38 H 0.39 3.78 8.60 -40.82 -0.35 3.43 16 39 H 0.09 0.48 8.14 -51.93 -0.42 0.05 16 40 H 0.10 0.96 8.14 -51.93 -0.42 0.53 16 41 H 0.11 1.37 8.10 -51.93 -0.42 0.95 16 42 H 0.11 1.04 7.56 -51.93 -0.39 0.64 16 43 H 0.42 1.06 9.06 45.56 0.41 1.47 16 44 H 0.42 0.58 9.06 45.56 0.41 0.99 16 45 H 0.38 9.90 7.80 -40.82 -0.32 9.59 16 46 H 0.25 7.54 8.31 -40.82 -0.34 7.20 16 LS Contribution 395.89 15.07 5.97 5.97 Total: -1.00 -37.51 395.89 -5.65 -43.16 By element: Atomic # 1 Polarization: 15.75 SS G_CDS: -5.19 Total: 10.56 kcal Atomic # 6 Polarization: 5.47 SS G_CDS: -1.83 Total: 3.64 kcal Atomic # 7 Polarization: -65.12 SS G_CDS: 0.82 Total: -64.30 kcal Atomic # 8 Polarization: -16.49 SS G_CDS: -0.39 Total: -16.88 kcal Atomic # 14 Polarization: 22.88 SS G_CDS: -5.02 Total: 17.85 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -37.51 -5.65 -43.16 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001134863256.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.950 kcal (2) G-P(sol) polarization free energy of solvation -37.511 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.561 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.648 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.159 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.209 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds