Wall clock time and date at job start Tue Mar 31 2020 22:54:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09005 * 109.46685 * 2 1 4 4 C 1.53001 * 109.46980 * 240.01163 * 2 1 3 5 5 C 1.52997 * 109.46997 * 174.99708 * 4 2 1 6 6 H 1.09001 * 109.47502 * 55.00061 * 5 4 2 7 7 C 1.53006 * 109.47127 * 174.99904 * 5 4 2 8 8 N 1.46500 * 109.47007 * 294.99685 * 5 4 2 9 9 C 1.34773 * 119.99910 * 155.00372 * 8 5 4 10 10 O 1.21288 * 120.00271 * 359.97438 * 9 8 5 11 11 C 1.50699 * 119.99928 * 179.97438 * 9 8 5 12 12 C 1.53002 * 109.47295 * 179.97438 * 11 9 8 13 13 C 1.50699 * 109.47295 * 180.02562 * 12 11 9 14 14 N 1.31966 * 120.41523 * 90.00140 * 13 12 11 15 15 N 1.28703 * 120.53747 * 179.97438 * 14 13 12 16 16 C 1.32519 * 121.45643 * 359.97438 * 15 14 13 17 17 O 1.35458 * 119.60014 * 179.97438 * 16 15 14 18 18 N 1.32520 * 120.80168 * 0.02562 * 16 15 14 19 19 C 1.32889 * 119.38078 * 359.73676 * 18 16 15 20 20 O 1.35523 * 120.67354 * 180.27205 * 19 18 16 21 21 N 1.46490 * 109.47378 * 120.00462 * 2 1 3 22 22 C 1.36931 * 120.00285 * 274.99839 * 21 2 1 23 23 H 1.07993 * 120.00221 * 0.02562 * 22 21 2 24 24 C 1.38821 * 120.00059 * 179.97438 * 22 21 2 25 25 N 1.31615 * 119.99860 * 0.02562 * 24 22 21 26 26 Si 1.86796 * 119.99945 * 180.02562 * 24 22 21 27 27 H 1.48500 * 109.47149 * 90.00107 * 26 24 22 28 28 H 1.48500 * 109.47375 * 210.00226 * 26 24 22 29 29 H 1.48503 * 109.47188 * 330.00260 * 26 24 22 30 30 H 1.08994 * 109.46862 * 299.98737 * 1 2 3 31 31 H 1.08993 * 109.47399 * 59.99735 * 1 2 3 32 32 H 1.09000 * 109.46373 * 179.97438 * 1 2 3 33 33 H 1.08993 * 109.47331 * 54.99412 * 4 2 1 34 34 H 1.09002 * 109.46801 * 294.99525 * 4 2 1 35 35 H 1.09001 * 109.47002 * 299.99574 * 7 5 4 36 36 H 1.08993 * 109.46955 * 60.00011 * 7 5 4 37 37 H 1.09000 * 109.47050 * 179.97438 * 7 5 4 38 38 H 0.96995 * 120.00293 * 334.99551 * 8 5 4 39 39 H 1.09000 * 109.47712 * 299.99892 * 11 9 8 40 40 H 1.08995 * 109.47183 * 60.00106 * 11 9 8 41 41 H 1.09001 * 109.47011 * 299.99877 * 12 11 9 42 42 H 1.08999 * 109.47215 * 59.99859 * 12 11 9 43 43 H 0.96699 * 114.00169 * 89.99949 * 17 16 15 44 44 H 0.96699 * 113.99734 * 270.23716 * 20 19 18 45 45 H 0.97006 * 119.99783 * 95.00992 * 21 2 1 46 46 H 0.96996 * 119.99884 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7210 -1.2494 5 6 3.5648 -0.6130 -1.3139 6 1 3.9955 -0.9921 -0.3871 7 6 4.0852 -1.4378 -2.4929 8 7 3.9478 0.7898 -1.4925 9 6 5.1611 1.2139 -1.0868 10 8 5.9356 0.4344 -0.5734 11 6 5.5553 2.6567 -1.2710 12 6 6.9700 2.8720 -0.7295 13 6 7.3640 4.3149 -0.9132 14 7 7.1090 5.2023 0.0297 15 7 7.4449 6.4351 -0.1245 16 6 8.0535 6.8537 -1.2247 17 8 8.3897 8.1601 -1.3476 18 7 8.3362 6.0099 -2.2067 19 6 8.0082 4.7284 -2.0798 20 8 8.2899 3.8418 -3.0653 21 7 2.0184 -0.6906 1.1960 22 6 2.1493 -0.0077 2.3756 23 1 1.8921 1.0400 2.4244 24 6 2.6116 -0.6624 3.5091 25 7 2.9246 -1.9394 3.4498 26 14 2.7894 0.2692 5.1184 27 1 1.5214 0.1778 5.8860 28 1 3.8937 -0.3242 5.9145 29 1 3.0944 1.6945 4.8343 30 1 -0.3633 0.5136 0.8901 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3632 -1.0277 -0.0005 33 1 1.6054 -0.2614 -2.1370 34 1 1.7517 -1.7713 -1.2059 35 1 3.8002 -2.4815 -2.3600 36 1 3.6546 -1.0587 -3.4196 37 1 5.1714 -1.3604 -2.5390 38 1 3.3284 1.4132 -1.9028 39 1 5.5296 2.9079 -2.3313 40 1 4.8582 3.2958 -0.7292 41 1 6.9953 2.6210 0.3309 42 1 7.6675 2.2328 -1.2709 43 1 9.2718 8.3724 -1.0130 44 1 7.5887 3.7511 -3.7249 45 1 2.2493 -1.6318 1.1523 46 1 3.2479 -2.3967 4.2417 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001134863256.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:54:49 Heat of formation + Delta-G solvation = -72.872636 kcal Electronic energy + Delta-G solvation = -29507.068189 eV Core-core repulsion = 25239.291160 eV Total energy + Delta-G solvation = -4267.777029 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -43.26593 -40.82196 -39.56977 -38.72632 -38.31858 -36.08928 -35.71749 -34.97278 -33.97376 -32.38736 -31.14374 -30.35553 -27.58148 -27.32326 -26.26223 -25.62978 -24.22797 -22.28202 -21.36639 -21.11058 -21.09424 -20.65300 -19.56562 -19.25585 -18.27157 -17.40780 -17.13412 -16.80435 -16.64584 -16.35176 -16.13005 -15.58407 -15.44548 -15.23061 -14.87806 -14.51758 -14.42525 -14.09265 -13.88800 -13.58675 -13.51625 -13.38455 -13.33047 -13.29057 -13.08641 -12.88235 -12.76335 -12.64714 -12.63297 -12.33254 -12.21442 -12.18012 -12.14075 -11.77075 -11.51587 -11.37161 -11.03019 -10.88777 -10.67773 -10.47520 -9.87280 -8.91716 -7.89737 -5.14465 -0.90369 -0.70691 1.44859 1.46935 1.49677 1.53947 1.81696 1.82234 2.03775 2.31880 2.58468 2.64037 3.24103 3.45162 3.50288 3.72684 3.85376 3.88865 4.03882 4.13347 4.20828 4.23878 4.42539 4.47510 4.56929 4.61425 4.75838 4.84273 4.88641 4.91963 4.99584 5.08982 5.09124 5.13847 5.31079 5.39457 5.40854 5.48996 5.56322 5.66389 5.76525 6.24451 6.27721 6.33873 6.75434 7.10282 7.39763 7.48781 8.20626 8.39507 9.34121 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.010457 B = 0.002911 C = 0.002506 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2676.925366 B = 9615.852386 C =11172.452720 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.163 3.837 3 H 0.046 0.954 4 C -0.118 4.118 5 C 0.146 3.854 6 H 0.044 0.956 7 C -0.150 4.150 8 N -0.706 5.706 9 C 0.509 3.491 10 O -0.586 6.586 11 C -0.122 4.122 12 C -0.043 4.043 13 C 0.015 3.985 14 N -0.170 5.170 15 N -0.309 5.309 16 C 0.460 3.540 17 O -0.453 6.453 18 N -0.517 5.517 19 C 0.392 3.608 20 O -0.457 6.457 21 N -0.731 5.731 22 C -0.223 4.223 23 H 0.070 0.930 24 C -0.077 4.077 25 N -0.969 5.969 26 Si 0.958 3.042 27 H -0.287 1.287 28 H -0.301 1.301 29 H -0.273 1.273 30 H 0.027 0.973 31 H 0.077 0.923 32 H 0.040 0.960 33 H 0.107 0.893 34 H 0.071 0.929 35 H 0.063 0.937 36 H 0.083 0.917 37 H 0.041 0.959 38 H 0.413 0.587 39 H 0.138 0.862 40 H 0.103 0.897 41 H 0.076 0.924 42 H 0.112 0.888 43 H 0.439 0.561 44 H 0.441 0.559 45 H 0.369 0.631 46 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.795 14.476 -21.203 26.557 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.055 3.945 3 H 0.064 0.936 4 C -0.157 4.157 5 C 0.041 3.959 6 H 0.063 0.937 7 C -0.208 4.208 8 N -0.357 5.357 9 C 0.296 3.704 10 O -0.466 6.466 11 C -0.163 4.163 12 C -0.083 4.083 13 C -0.139 4.139 14 N -0.022 5.022 15 N -0.167 5.167 16 C 0.154 3.846 17 O -0.259 6.259 18 N -0.261 5.261 19 C 0.192 3.808 20 O -0.268 6.268 21 N -0.371 5.371 22 C -0.355 4.355 23 H 0.088 0.912 24 C -0.269 4.269 25 N -0.621 5.621 26 Si 0.789 3.211 27 H -0.214 1.214 28 H -0.228 1.228 29 H -0.198 1.198 30 H 0.047 0.953 31 H 0.095 0.905 32 H 0.059 0.941 33 H 0.125 0.875 34 H 0.090 0.910 35 H 0.082 0.918 36 H 0.102 0.898 37 H 0.060 0.940 38 H 0.250 0.750 39 H 0.156 0.844 40 H 0.121 0.879 41 H 0.095 0.905 42 H 0.130 0.870 43 H 0.304 0.696 44 H 0.308 0.692 45 H 0.201 0.799 46 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 7.169 14.943 -20.033 26.000 hybrid contribution 0.354 -0.365 0.704 0.868 sum 7.522 14.579 -19.329 25.352 Atomic orbital electron populations 1.22324 0.98013 1.00733 1.00662 1.20534 0.92434 0.95416 0.86082 0.93633 1.22072 0.93187 1.01991 0.98407 1.20779 0.95247 0.81583 0.98284 0.93737 1.22064 1.00578 0.99964 0.98184 1.45847 1.16483 1.11271 1.62144 1.20972 0.81781 0.90806 0.76823 1.90741 1.52726 1.58333 1.44766 1.21563 0.96519 0.92329 1.05865 1.20126 0.97463 0.86293 1.04388 1.23987 0.96766 1.00005 0.93092 1.73665 1.09879 0.95211 1.23412 1.73656 1.14178 1.08783 1.20120 1.21780 0.91178 0.86643 0.85040 1.84709 1.41988 1.14842 1.84347 1.68158 1.21092 1.03638 1.33177 1.19883 0.86121 0.85197 0.89551 1.84719 1.48401 1.55179 1.38505 1.42605 1.78145 1.10089 1.06286 1.19493 1.33773 0.93782 0.88448 0.91202 1.25395 1.03684 0.96796 1.01074 1.69791 1.53210 1.10089 1.28979 0.85348 0.76753 0.78147 0.80879 1.21430 1.22808 1.19796 0.95328 0.90460 0.94113 0.87460 0.91016 0.91825 0.89826 0.93979 0.75016 0.84425 0.87880 0.90511 0.86983 0.69576 0.69191 0.79908 0.94454 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.98 9.49 71.98 0.68 -4.30 16 2 C 0.16 5.70 2.84 45.00 0.13 5.83 16 3 H 0.05 1.60 7.56 -2.38 -0.02 1.58 16 4 C -0.12 -3.10 4.29 30.59 0.13 -2.97 16 5 C 0.15 4.23 2.52 44.99 0.11 4.35 16 6 H 0.04 1.88 7.05 -2.39 -0.02 1.87 16 7 C -0.15 -3.48 9.48 71.98 0.68 -2.80 16 8 N -0.71 -16.53 4.45 -442.52 -1.97 -18.50 16 9 C 0.51 13.73 7.79 87.66 0.68 14.42 16 10 O -0.59 -22.53 15.65 -3.05 -0.05 -22.58 16 11 C -0.12 -2.05 5.68 29.85 0.17 -1.88 16 12 C -0.04 -0.85 4.64 29.85 0.14 -0.72 16 13 C 0.01 0.28 6.15 42.85 0.26 0.55 16 14 N -0.17 -4.23 11.55 -47.05 -0.54 -4.77 16 15 N -0.31 -7.48 11.58 -174.47 -2.02 -9.50 16 16 C 0.46 9.12 8.82 180.45 1.59 10.71 16 17 O -0.45 -6.63 13.64 -87.56 -1.19 -7.82 16 18 N -0.52 -9.72 10.59 -425.68 -4.51 -14.23 16 19 C 0.39 6.30 7.81 84.84 0.66 6.96 16 20 O -0.46 -4.57 12.73 -88.26 -1.12 -5.69 16 21 N -0.73 -35.61 4.49 -322.95 -1.45 -37.06 16 22 C -0.22 -12.38 9.93 84.04 0.83 -11.54 16 23 H 0.07 3.77 7.83 -2.91 -0.02 3.75 16 24 C -0.08 -4.58 5.50 84.86 0.47 -4.11 16 25 N -0.97 -61.09 13.06 21.65 0.28 -60.81 16 26 Si 0.96 48.18 29.55 68.60 2.03 50.21 16 27 H -0.29 -14.06 7.11 99.48 0.71 -13.35 16 28 H -0.30 -15.46 7.11 99.48 0.71 -14.75 16 29 H -0.27 -13.12 7.11 99.48 0.71 -12.41 16 30 H 0.03 1.02 8.14 -2.39 -0.02 1.00 16 31 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 32 H 0.04 1.32 8.14 -2.39 -0.02 1.30 16 33 H 0.11 1.87 8.14 -2.39 -0.02 1.85 16 34 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 35 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 36 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 37 H 0.04 1.10 8.14 -2.39 -0.02 1.08 16 38 H 0.41 6.37 8.60 -92.71 -0.80 5.58 16 39 H 0.14 0.88 8.14 -2.39 -0.02 0.86 16 40 H 0.10 1.75 8.14 -2.39 -0.02 1.73 16 41 H 0.08 2.04 8.10 -2.39 -0.02 2.03 16 42 H 0.11 2.09 7.56 -2.39 -0.02 2.08 16 43 H 0.44 1.55 9.06 -74.06 -0.67 0.88 16 44 H 0.44 -0.66 9.06 -74.06 -0.67 -1.33 16 45 H 0.37 19.79 7.80 -92.70 -0.72 19.07 16 46 H 0.25 15.26 8.31 -92.71 -0.77 14.49 16 Total: -1.00 -86.62 395.89 -5.80 -92.41 By element: Atomic # 1 Polarization: 25.63 SS G_CDS: -1.80 Total: 23.83 kcal Atomic # 6 Polarization: 7.96 SS G_CDS: 6.55 Total: 14.50 kcal Atomic # 7 Polarization: -134.66 SS G_CDS: -10.21 Total: -144.87 kcal Atomic # 8 Polarization: -33.72 SS G_CDS: -2.37 Total: -36.09 kcal Atomic # 14 Polarization: 48.18 SS G_CDS: 2.03 Total: 50.21 kcal Total: -86.62 -5.80 -92.41 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001134863256.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.542 kcal (2) G-P(sol) polarization free energy of solvation -86.615 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.074 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.799 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.414 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.873 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds