Wall clock time and date at job start Tue Mar 31 2020 23:23:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45209 * 1 3 3 C 1.34225 * 116.99890 * 2 1 4 4 O 1.20828 * 120.00009 * 359.97438 * 3 2 1 5 5 C 1.50695 * 119.99954 * 179.97438 * 3 2 1 6 6 N 1.46505 * 109.47338 * 179.97438 * 5 3 2 7 7 C 1.37099 * 119.99754 * 93.35387 * 6 5 3 8 8 H 1.07999 * 119.99775 * 164.37913 * 7 6 5 9 9 C 1.38946 * 120.00147 * 344.10698 * 7 6 5 10 10 N 1.31417 * 120.00068 * 337.68727 * 9 7 6 11 11 Si 1.86806 * 119.99993 * 157.68591 * 9 7 6 12 12 H 1.48500 * 109.46978 * 89.99914 * 11 9 7 13 13 H 1.48499 * 109.47015 * 209.99736 * 11 9 7 14 14 H 1.48500 * 109.46851 * 329.99722 * 11 9 7 15 15 C 1.34774 * 119.99954 * 273.35609 * 6 5 3 16 16 O 1.21287 * 119.99946 * 355.18286 * 15 6 5 17 17 C 1.50693 * 119.99916 * 175.17800 * 15 6 5 18 18 H 1.08999 * 109.47373 * 38.42887 * 17 15 6 19 19 C 1.53001 * 109.47561 * 278.43062 * 17 15 6 20 20 N 1.46504 * 109.47258 * 158.42747 * 17 15 6 21 21 N 1.29015 * 126.43611 * 59.69392 * 20 17 15 22 22 N 1.28741 * 108.80934 * 179.83746 * 21 20 17 23 23 N 1.28836 * 109.39489 * 0.43104 * 22 21 20 24 24 C 1.31074 * 107.99468 * 359.73931 * 23 22 21 25 25 C 1.50701 * 126.66369 * 179.97438 * 24 23 22 26 26 C 1.52995 * 109.47289 * 240.04085 * 25 24 23 27 27 C 1.52995 * 109.46888 * 0.04480 * 25 24 23 28 28 C 1.53004 * 109.46931 * 120.04277 * 25 24 23 29 29 H 1.09002 * 109.46832 * 60.00582 * 1 2 3 30 30 H 1.09004 * 109.46839 * 180.02562 * 1 2 3 31 31 H 1.08995 * 109.47057 * 300.00510 * 1 2 3 32 32 H 1.09002 * 109.46978 * 59.99796 * 5 3 2 33 33 H 1.08998 * 109.47335 * 299.99798 * 5 3 2 34 34 H 0.96998 * 119.99590 * 180.02562 * 10 9 7 35 35 H 1.08998 * 109.47670 * 182.04897 * 19 17 15 36 36 H 1.09002 * 109.46788 * 302.04804 * 19 17 15 37 37 H 1.09003 * 109.47131 * 62.04319 * 19 17 15 38 38 H 1.09007 * 109.46961 * 59.99815 * 26 25 24 39 39 H 1.08997 * 109.47366 * 179.97438 * 26 25 24 40 40 H 1.09002 * 109.47119 * 300.00396 * 26 25 24 41 41 H 1.08993 * 109.47280 * 60.00179 * 27 25 24 42 42 H 1.09006 * 109.46837 * 180.02562 * 27 25 24 43 43 H 1.09000 * 109.47408 * 299.99536 * 27 25 24 44 44 H 1.09002 * 109.47052 * 59.99864 * 28 25 24 45 45 H 1.08993 * 109.47085 * 180.02562 * 28 25 24 46 46 H 1.09004 * 109.47184 * 300.00377 * 28 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2748 0.0006 6 7 3.9817 2.6798 -0.0002 7 6 4.2422 3.3182 1.1849 8 1 4.7820 4.2535 1.1870 9 6 3.8068 2.7646 2.3826 10 7 2.8073 1.9114 2.3871 11 14 4.6422 3.2332 3.9864 12 1 3.9610 4.4155 4.5723 13 1 4.5629 2.0949 4.9368 14 1 6.0666 3.5616 3.7250 15 6 4.1078 3.3446 -1.1657 16 8 3.9628 2.7579 -2.2173 17 6 4.4288 4.8169 -1.1624 18 1 5.1423 5.0315 -0.3668 19 6 3.1467 5.6180 -0.9273 20 7 5.0097 5.1930 -2.4537 21 7 4.4496 5.0738 -3.6098 22 7 5.2593 5.5106 -4.5104 23 7 6.3496 5.9065 -3.9497 24 6 6.2303 5.7226 -2.6574 25 6 7.2600 6.0415 -1.6043 26 6 7.6382 4.7613 -0.8566 27 6 8.5053 6.6300 -2.2704 28 6 6.6818 7.0570 -0.6166 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5139 0.8899 32 1 3.9564 0.7805 -0.8891 33 1 3.9557 0.7810 0.8908 34 1 2.5031 1.5253 3.2234 35 1 3.3727 6.6838 -0.9611 36 1 2.4197 5.3760 -1.7026 37 1 2.7340 5.3649 0.0494 38 1 8.0501 4.0378 -1.5602 39 1 8.3833 4.9919 -0.0952 40 1 6.7510 4.3421 -0.3821 41 1 8.2359 7.5419 -2.8029 42 1 9.2503 6.8602 -1.5086 43 1 8.9173 5.9065 -2.9739 44 1 5.7945 6.6377 -0.1422 45 1 7.4266 7.2880 0.1448 46 1 6.4122 7.9690 -1.1493 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001147593587.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:23:28 Heat of formation + Delta-G solvation = 8.797476 kcal Electronic energy + Delta-G solvation = -32290.367245 eV Core-core repulsion = 28026.131698 eV Total energy + Delta-G solvation = -4264.235547 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -43.76243 -39.76223 -38.75321 -37.30900 -35.88719 -35.05575 -34.79902 -32.01636 -31.50853 -30.75228 -28.60916 -27.50580 -27.41819 -26.45604 -25.34996 -24.67229 -23.46000 -22.44758 -20.56845 -19.83467 -19.50877 -17.94956 -17.00925 -16.72542 -16.26269 -16.08802 -15.64082 -15.53325 -15.32599 -14.73690 -14.44419 -14.33753 -14.04577 -13.83976 -13.21323 -12.97467 -12.72466 -12.62543 -12.49896 -12.42558 -12.20764 -12.04004 -11.98610 -11.82094 -11.75732 -11.54486 -11.49864 -11.40312 -11.35047 -11.17614 -11.02516 -10.81811 -10.78874 -10.62488 -10.54342 -10.47168 -9.92846 -9.79576 -9.60058 -9.22594 -8.82667 -8.27250 -6.80840 -4.32089 1.74360 2.34752 2.70128 2.85423 3.00766 3.02899 3.15538 3.53260 3.72315 3.85861 4.01179 4.21309 4.49320 4.62833 4.77378 4.81684 5.00086 5.14849 5.31034 5.40834 5.48973 5.61132 5.62176 5.66560 5.70337 5.72644 5.76742 5.78128 5.83179 5.84356 5.93737 5.99011 6.05082 6.08871 6.19071 6.20973 6.25448 6.30810 6.37296 6.45268 6.66322 6.97250 7.17235 7.37921 7.86366 8.64479 8.90108 9.00553 9.12841 9.37290 10.25240 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.012214 B = 0.004975 C = 0.003883 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2291.829602 B = 5626.294420 C = 7209.646913 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.045 3.955 2 O -0.375 6.375 3 C 0.486 3.514 4 O -0.497 6.497 5 C 0.157 3.843 6 N -0.414 5.414 7 C -0.355 4.355 8 H 0.103 0.897 9 C 0.048 3.952 10 N -0.853 5.853 11 Si 0.922 3.078 12 H -0.274 1.274 13 H -0.279 1.279 14 H -0.265 1.265 15 C 0.456 3.544 16 O -0.572 6.572 17 C 0.133 3.867 18 H 0.138 0.862 19 C -0.149 4.149 20 N -0.278 5.278 21 N -0.055 5.055 22 N -0.102 5.102 23 N -0.310 5.310 24 C 0.181 3.819 25 C 0.016 3.984 26 C -0.155 4.155 27 C -0.128 4.128 28 C -0.153 4.153 29 H 0.051 0.949 30 H 0.086 0.914 31 H 0.056 0.944 32 H 0.087 0.913 33 H 0.123 0.877 34 H 0.277 0.723 35 H 0.062 0.938 36 H 0.074 0.926 37 H 0.105 0.895 38 H 0.063 0.937 39 H 0.077 0.923 40 H 0.068 0.932 41 H 0.064 0.936 42 H 0.066 0.934 43 H 0.065 0.935 44 H 0.063 0.937 45 H 0.078 0.922 46 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.718 3.745 3.019 7.472 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.050 4.050 2 O -0.293 6.293 3 C 0.327 3.673 4 O -0.381 6.381 5 C 0.032 3.968 6 N -0.132 5.132 7 C -0.481 4.481 8 H 0.121 0.879 9 C -0.159 4.159 10 N -0.489 5.489 11 Si 0.747 3.253 12 H -0.200 1.200 13 H -0.204 1.204 14 H -0.189 1.189 15 C 0.242 3.758 16 O -0.455 6.455 17 C 0.029 3.971 18 H 0.155 0.845 19 C -0.208 4.208 20 N -0.080 5.080 21 N -0.041 5.041 22 N -0.095 5.095 23 N -0.159 5.159 24 C -0.097 4.097 25 C 0.013 3.987 26 C -0.213 4.213 27 C -0.186 4.186 28 C -0.211 4.211 29 H 0.069 0.931 30 H 0.105 0.895 31 H 0.075 0.925 32 H 0.105 0.895 33 H 0.141 0.859 34 H 0.088 0.912 35 H 0.081 0.919 36 H 0.093 0.907 37 H 0.123 0.877 38 H 0.083 0.917 39 H 0.096 0.904 40 H 0.087 0.913 41 H 0.084 0.916 42 H 0.085 0.915 43 H 0.084 0.916 44 H 0.082 0.918 45 H 0.097 0.903 46 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 4.803 3.560 1.272 6.113 hybrid contribution -0.032 0.112 2.049 2.052 sum 4.771 3.672 3.321 6.876 Atomic orbital electron populations 1.22948 0.78413 1.01919 1.01717 1.86441 1.21881 1.35269 1.85664 1.23717 0.92044 0.80742 0.70829 1.90515 1.66398 1.36285 1.44927 1.20471 0.87737 0.84675 1.03960 1.43309 1.56635 1.08194 1.05098 1.19524 1.36546 1.09668 0.82358 0.87929 1.25221 0.94195 0.96619 0.99910 1.69806 1.20687 1.29455 1.28986 0.86000 0.79946 0.78645 0.80660 1.19999 1.20364 1.18891 1.19609 0.84429 0.87094 0.84692 1.90683 1.56066 1.67924 1.30864 1.21940 0.99357 0.96770 0.79075 0.84529 1.21979 0.94860 0.98119 1.05796 1.48369 1.11501 1.39501 1.08629 1.78990 1.21896 1.15636 0.87597 1.78558 0.96567 1.12566 1.21804 1.74841 1.17768 1.20536 1.02734 1.25908 0.88544 1.00080 0.95157 1.19180 0.91609 0.97293 0.90661 1.22121 1.03054 0.95585 1.00518 1.21718 0.94801 1.01643 1.00454 1.22112 1.01886 0.98447 0.98638 0.93069 0.89541 0.92521 0.89517 0.85905 0.91164 0.91890 0.90721 0.87667 0.91747 0.90381 0.91348 0.91645 0.91520 0.91590 0.91815 0.90328 0.91747 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.74 10.56 101.05 1.07 1.80 16 2 O -0.37 -7.67 10.57 -39.24 -0.41 -8.08 16 3 C 0.49 11.24 6.02 36.00 0.22 11.45 16 4 O -0.50 -12.78 15.67 -18.75 -0.29 -13.07 16 5 C 0.16 3.46 5.22 -5.19 -0.03 3.43 16 6 N -0.41 -9.22 2.14 -116.10 -0.25 -9.47 16 7 C -0.35 -7.52 8.64 -14.93 -0.13 -7.65 16 8 H 0.10 1.95 5.98 -52.49 -0.31 1.63 16 9 C 0.05 1.03 4.87 -17.47 -0.09 0.95 16 10 N -0.85 -19.60 9.04 55.50 0.50 -19.09 16 11 Si 0.92 16.57 29.61 -169.99 -5.03 11.53 16 12 H -0.27 -5.02 7.11 56.52 0.40 -4.62 16 13 H -0.28 -5.13 7.11 56.52 0.40 -4.73 16 14 H -0.26 -4.55 7.11 56.52 0.40 -4.14 16 15 C 0.46 10.25 6.77 -10.99 -0.07 10.18 16 16 O -0.57 -14.76 15.36 5.55 0.09 -14.68 16 17 C 0.13 2.48 1.52 -69.08 -0.11 2.38 16 18 H 0.14 2.23 1.91 -51.93 -0.10 2.13 16 19 C -0.15 -2.61 9.35 37.16 0.35 -2.26 16 20 N -0.28 -5.37 2.93 -52.93 -0.16 -5.53 16 21 N -0.06 -1.22 12.12 60.35 0.73 -0.49 16 22 N -0.10 -2.19 13.43 60.35 0.81 -1.38 16 23 N -0.31 -5.96 11.71 32.70 0.38 -5.58 16 24 C 0.18 3.12 6.40 -155.43 -1.00 2.13 16 25 C 0.02 0.20 0.75 -155.66 -0.12 0.09 16 26 C -0.15 -1.93 8.31 37.16 0.31 -1.62 16 27 C -0.13 -1.38 8.00 37.16 0.30 -1.08 16 28 C -0.15 -1.62 8.31 37.16 0.31 -1.32 16 29 H 0.05 0.84 8.13 -51.93 -0.42 0.42 16 30 H 0.09 1.09 8.14 -51.93 -0.42 0.66 16 31 H 0.06 0.96 8.13 -51.93 -0.42 0.54 16 32 H 0.09 1.84 7.46 -51.93 -0.39 1.45 16 33 H 0.12 2.63 6.53 -51.93 -0.34 2.29 16 34 H 0.28 6.13 8.31 -40.82 -0.34 5.79 16 35 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 36 H 0.07 1.45 8.14 -51.93 -0.42 1.02 16 37 H 0.10 1.91 7.68 -51.93 -0.40 1.51 16 38 H 0.06 0.85 8.14 -51.92 -0.42 0.42 16 39 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 40 H 0.07 0.98 5.58 -51.93 -0.29 0.69 16 41 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 42 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 43 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 44 H 0.06 0.72 5.58 -51.93 -0.29 0.43 16 45 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 46 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 LS Contribution 375.32 15.07 5.66 5.66 Total: -1.00 -30.91 375.32 -3.29 -34.20 By element: Atomic # 1 Polarization: 13.84 SS G_CDS: -6.32 Total: 7.52 kcal Atomic # 6 Polarization: 17.46 SS G_CDS: 1.01 Total: 18.47 kcal Atomic # 7 Polarization: -43.57 SS G_CDS: 2.02 Total: -41.54 kcal Atomic # 8 Polarization: -35.21 SS G_CDS: -0.62 Total: -35.83 kcal Atomic # 14 Polarization: 16.57 SS G_CDS: -5.03 Total: 11.53 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -30.91 -3.29 -34.20 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001147593587.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.994 kcal (2) G-P(sol) polarization free energy of solvation -30.908 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.086 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.289 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.196 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.797 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds