Wall clock time and date at job start Tue Mar 31 2020 23:23:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45209 * 1 3 3 C 1.34225 * 116.99890 * 2 1 4 4 O 1.20828 * 120.00009 * 359.97438 * 3 2 1 5 5 C 1.50695 * 119.99954 * 179.97438 * 3 2 1 6 6 N 1.46505 * 109.47338 * 179.97438 * 5 3 2 7 7 C 1.37099 * 119.99754 * 93.35387 * 6 5 3 8 8 H 1.07999 * 119.99775 * 164.37913 * 7 6 5 9 9 C 1.38946 * 120.00147 * 344.10698 * 7 6 5 10 10 N 1.31417 * 120.00068 * 337.68727 * 9 7 6 11 11 Si 1.86806 * 119.99993 * 157.68591 * 9 7 6 12 12 H 1.48500 * 109.46978 * 89.99914 * 11 9 7 13 13 H 1.48499 * 109.47015 * 209.99736 * 11 9 7 14 14 H 1.48500 * 109.46851 * 329.99722 * 11 9 7 15 15 C 1.34774 * 119.99954 * 273.35609 * 6 5 3 16 16 O 1.21287 * 119.99946 * 355.18286 * 15 6 5 17 17 C 1.50693 * 119.99916 * 175.17800 * 15 6 5 18 18 H 1.08999 * 109.47373 * 38.42887 * 17 15 6 19 19 C 1.53001 * 109.47561 * 278.43062 * 17 15 6 20 20 N 1.46504 * 109.47258 * 158.42747 * 17 15 6 21 21 N 1.29015 * 126.43611 * 59.69392 * 20 17 15 22 22 N 1.28741 * 108.80934 * 179.83746 * 21 20 17 23 23 N 1.28836 * 109.39489 * 0.43104 * 22 21 20 24 24 C 1.31074 * 107.99468 * 359.73931 * 23 22 21 25 25 C 1.50701 * 126.66369 * 179.97438 * 24 23 22 26 26 C 1.52995 * 109.47289 * 240.04085 * 25 24 23 27 27 C 1.52995 * 109.46888 * 0.04480 * 25 24 23 28 28 C 1.53004 * 109.46931 * 120.04277 * 25 24 23 29 29 H 1.09002 * 109.46832 * 60.00582 * 1 2 3 30 30 H 1.09004 * 109.46839 * 180.02562 * 1 2 3 31 31 H 1.08995 * 109.47057 * 300.00510 * 1 2 3 32 32 H 1.09002 * 109.46978 * 59.99796 * 5 3 2 33 33 H 1.08998 * 109.47335 * 299.99798 * 5 3 2 34 34 H 0.96998 * 119.99590 * 180.02562 * 10 9 7 35 35 H 1.08998 * 109.47670 * 182.04897 * 19 17 15 36 36 H 1.09002 * 109.46788 * 302.04804 * 19 17 15 37 37 H 1.09003 * 109.47131 * 62.04319 * 19 17 15 38 38 H 1.09007 * 109.46961 * 59.99815 * 26 25 24 39 39 H 1.08997 * 109.47366 * 179.97438 * 26 25 24 40 40 H 1.09002 * 109.47119 * 300.00396 * 26 25 24 41 41 H 1.08993 * 109.47280 * 60.00179 * 27 25 24 42 42 H 1.09006 * 109.46837 * 180.02562 * 27 25 24 43 43 H 1.09000 * 109.47408 * 299.99536 * 27 25 24 44 44 H 1.09002 * 109.47052 * 59.99864 * 28 25 24 45 45 H 1.08993 * 109.47085 * 180.02562 * 28 25 24 46 46 H 1.09004 * 109.47184 * 300.00377 * 28 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2748 0.0006 6 7 3.9817 2.6798 -0.0002 7 6 4.2422 3.3182 1.1849 8 1 4.7820 4.2535 1.1870 9 6 3.8068 2.7646 2.3826 10 7 2.8073 1.9114 2.3871 11 14 4.6422 3.2332 3.9864 12 1 3.9610 4.4155 4.5723 13 1 4.5629 2.0949 4.9368 14 1 6.0666 3.5616 3.7250 15 6 4.1078 3.3446 -1.1657 16 8 3.9628 2.7579 -2.2173 17 6 4.4288 4.8169 -1.1624 18 1 5.1423 5.0315 -0.3668 19 6 3.1467 5.6180 -0.9273 20 7 5.0097 5.1930 -2.4537 21 7 4.4496 5.0738 -3.6098 22 7 5.2593 5.5106 -4.5104 23 7 6.3496 5.9065 -3.9497 24 6 6.2303 5.7226 -2.6574 25 6 7.2600 6.0415 -1.6043 26 6 7.6382 4.7613 -0.8566 27 6 8.5053 6.6300 -2.2704 28 6 6.6818 7.0570 -0.6166 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5139 0.8899 32 1 3.9564 0.7805 -0.8891 33 1 3.9557 0.7810 0.8908 34 1 2.5031 1.5253 3.2234 35 1 3.3727 6.6838 -0.9611 36 1 2.4197 5.3760 -1.7026 37 1 2.7340 5.3649 0.0494 38 1 8.0501 4.0378 -1.5602 39 1 8.3833 4.9919 -0.0952 40 1 6.7510 4.3421 -0.3821 41 1 8.2359 7.5419 -2.8029 42 1 9.2503 6.8602 -1.5086 43 1 8.9173 5.9065 -2.9739 44 1 5.7945 6.6377 -0.1422 45 1 7.4266 7.2880 0.1448 46 1 6.4122 7.9690 -1.1493 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001147593587.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:23:26 Heat of formation + Delta-G solvation = -10.373340 kcal Electronic energy + Delta-G solvation = -32291.198554 eV Core-core repulsion = 28026.131698 eV Total energy + Delta-G solvation = -4265.066856 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -45.26179 -41.49864 -40.45674 -38.40477 -37.53112 -36.69368 -36.53110 -33.69255 -33.03161 -32.22337 -30.24982 -28.43316 -28.28472 -27.94013 -26.98506 -26.16820 -24.83776 -24.01232 -22.19575 -21.28747 -20.97216 -19.54760 -18.63728 -18.44389 -17.80255 -17.62231 -17.31455 -17.01995 -16.65166 -16.21267 -16.06932 -15.83035 -15.11292 -15.08178 -14.75804 -14.40507 -14.29106 -14.17624 -13.79774 -13.64544 -13.59539 -13.31175 -13.21314 -13.10262 -13.01108 -12.90767 -12.85883 -12.66415 -12.64455 -12.56923 -12.41888 -12.15584 -12.11400 -12.07232 -11.94396 -11.70054 -11.58594 -11.54628 -11.06160 -10.97266 -10.55137 -10.01072 -8.44849 -6.02217 0.26928 0.89988 1.18525 1.31801 1.55916 1.60374 1.66759 1.75374 2.14402 2.30251 2.58370 2.85737 3.00740 3.27231 3.51784 3.65775 3.80155 3.85897 4.02742 4.11494 4.21932 4.31902 4.33901 4.39038 4.41961 4.48326 4.51229 4.61209 4.65017 4.68758 4.71987 4.77460 4.83195 4.91727 4.98750 4.99893 5.03782 5.14786 5.29644 5.31003 5.35926 5.44101 5.48759 5.66098 6.18671 6.96308 7.15244 7.27945 7.59414 7.67724 8.61421 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.012214 B = 0.004975 C = 0.003883 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2291.829602 B = 5626.294420 C = 7209.646913 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 O -0.378 6.378 3 C 0.486 3.514 4 O -0.530 6.530 5 C 0.153 3.847 6 N -0.415 5.415 7 C -0.365 4.365 8 H 0.127 0.873 9 C 0.010 3.990 10 N -0.883 5.883 11 Si 0.989 3.011 12 H -0.276 1.276 13 H -0.288 1.288 14 H -0.244 1.244 15 C 0.440 3.560 16 O -0.617 6.617 17 C 0.142 3.858 18 H 0.166 0.834 19 C -0.142 4.142 20 N -0.282 5.282 21 N -0.092 5.092 22 N -0.120 5.120 23 N -0.323 5.323 24 C 0.195 3.805 25 C 0.013 3.987 26 C -0.153 4.153 27 C -0.125 4.125 28 C -0.153 4.153 29 H 0.048 0.952 30 H 0.132 0.868 31 H 0.049 0.951 32 H 0.086 0.914 33 H 0.127 0.873 34 H 0.276 0.724 35 H 0.097 0.903 36 H 0.047 0.953 37 H 0.099 0.901 38 H 0.049 0.951 39 H 0.116 0.884 40 H 0.048 0.952 41 H 0.061 0.939 42 H 0.103 0.897 43 H 0.051 0.949 44 H 0.056 0.944 45 H 0.114 0.886 46 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.698 5.094 5.425 10.707 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 O -0.295 6.295 3 C 0.329 3.671 4 O -0.418 6.418 5 C 0.028 3.972 6 N -0.132 5.132 7 C -0.491 4.491 8 H 0.144 0.856 9 C -0.194 4.194 10 N -0.520 5.520 11 Si 0.812 3.188 12 H -0.202 1.202 13 H -0.214 1.214 14 H -0.167 1.167 15 C 0.228 3.772 16 O -0.503 6.503 17 C 0.038 3.962 18 H 0.182 0.818 19 C -0.200 4.200 20 N -0.084 5.084 21 N -0.078 5.078 22 N -0.113 5.113 23 N -0.172 5.172 24 C -0.083 4.083 25 C 0.010 3.990 26 C -0.211 4.211 27 C -0.183 4.183 28 C -0.210 4.210 29 H 0.067 0.933 30 H 0.150 0.850 31 H 0.067 0.933 32 H 0.104 0.896 33 H 0.145 0.855 34 H 0.086 0.914 35 H 0.116 0.884 36 H 0.066 0.934 37 H 0.118 0.882 38 H 0.068 0.932 39 H 0.134 0.866 40 H 0.067 0.933 41 H 0.080 0.920 42 H 0.121 0.879 43 H 0.071 0.929 44 H 0.075 0.925 45 H 0.132 0.868 46 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 6.790 4.900 3.682 9.147 hybrid contribution -0.688 -0.395 1.319 1.540 sum 6.102 4.505 5.002 9.085 Atomic orbital electron populations 1.23280 0.76087 1.04799 1.01230 1.86414 1.24158 1.33847 1.85078 1.23871 0.92430 0.80925 0.69889 1.90485 1.67178 1.37430 1.46700 1.20529 0.87496 0.85217 1.03983 1.43542 1.55759 1.08242 1.05648 1.20065 1.36573 1.10524 0.81931 0.85577 1.26100 0.94172 0.96342 1.02813 1.69908 1.21915 1.30631 1.29526 0.84984 0.79903 0.77658 0.76274 1.20163 1.21359 1.16660 1.20227 0.84284 0.88589 0.84087 1.90645 1.58170 1.69249 1.32275 1.21960 1.00535 0.94143 0.79532 0.81767 1.21931 0.93749 1.00030 1.04323 1.48409 1.12173 1.39741 1.08080 1.78955 1.23096 1.17045 0.88718 1.78513 0.97341 1.13046 1.22434 1.74792 1.17253 1.21289 1.03873 1.26935 0.88257 0.97569 0.95549 1.19605 0.91123 0.98296 0.90021 1.22152 1.03092 0.94943 1.00947 1.21740 0.94499 1.00852 1.01162 1.22175 1.02571 0.97553 0.98724 0.93341 0.84978 0.93255 0.89579 0.85504 0.91403 0.88440 0.93371 0.88245 0.93176 0.86561 0.93296 0.91959 0.87877 0.92947 0.92514 0.86780 0.91462 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.29 10.56 113.37 1.20 2.49 16 2 O -0.38 -15.58 10.57 -51.37 -0.54 -16.13 16 3 C 0.49 23.03 6.02 71.23 0.43 23.46 16 4 O -0.53 -28.06 15.67 21.96 0.34 -27.72 16 5 C 0.15 6.91 5.22 85.63 0.45 7.35 16 6 N -0.41 -18.62 2.14 -639.62 -1.37 -19.99 16 7 C -0.37 -15.07 8.64 84.04 0.73 -14.34 16 8 H 0.13 4.45 5.98 -2.91 -0.02 4.44 16 9 C 0.01 0.43 4.87 84.92 0.41 0.84 16 10 N -0.88 -40.45 9.04 21.66 0.20 -40.25 16 11 Si 0.99 32.15 29.61 68.60 2.03 34.18 16 12 H -0.28 -9.04 7.11 99.48 0.71 -8.33 16 13 H -0.29 -9.74 7.11 99.48 0.71 -9.04 16 14 H -0.24 -7.07 7.11 99.48 0.71 -6.36 16 15 C 0.44 20.18 6.77 87.66 0.59 20.77 16 16 O -0.62 -33.12 15.36 -3.05 -0.05 -33.17 16 17 C 0.14 5.25 1.52 44.24 0.07 5.31 16 18 H 0.17 5.04 1.91 -2.39 0.00 5.04 16 19 C -0.14 -4.93 9.35 71.98 0.67 -4.25 16 20 N -0.28 -10.91 2.93 -321.36 -0.94 -11.85 16 21 N -0.09 -4.18 12.12 37.02 0.45 -3.73 16 22 N -0.12 -5.29 13.43 37.01 0.50 -4.79 16 23 N -0.32 -12.44 11.71 -50.45 -0.59 -13.03 16 24 C 0.19 6.53 6.40 138.13 0.88 7.41 16 25 C 0.01 0.30 0.75 -52.93 -0.04 0.26 16 26 C -0.15 -3.37 8.31 71.98 0.60 -2.77 16 27 C -0.12 -2.28 8.00 71.98 0.58 -1.71 16 28 C -0.15 -2.60 8.31 71.98 0.60 -2.00 16 29 H 0.05 1.60 8.13 -2.39 -0.02 1.58 16 30 H 0.13 3.04 8.14 -2.39 -0.02 3.02 16 31 H 0.05 1.67 8.13 -2.39 -0.02 1.65 16 32 H 0.09 3.81 7.46 -2.39 -0.02 3.79 16 33 H 0.13 5.52 6.53 -2.39 -0.02 5.51 16 34 H 0.28 12.17 8.31 -92.71 -0.77 11.40 16 35 H 0.10 2.65 8.14 -2.39 -0.02 2.63 16 36 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 37 H 0.10 3.56 7.68 -2.39 -0.02 3.54 16 38 H 0.05 1.23 8.14 -2.38 -0.02 1.21 16 39 H 0.12 1.66 8.14 -2.39 -0.02 1.64 16 40 H 0.05 1.27 5.58 -2.39 -0.01 1.26 16 41 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 42 H 0.10 1.16 8.14 -2.38 -0.02 1.14 16 43 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 44 H 0.06 1.05 5.58 -2.39 -0.01 1.04 16 45 H 0.11 1.18 8.14 -2.39 -0.02 1.16 16 46 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 Total: -1.00 -70.28 375.32 8.21 -62.07 By element: Atomic # 1 Polarization: 30.56 SS G_CDS: 1.02 Total: 31.58 kcal Atomic # 6 Polarization: 35.66 SS G_CDS: 7.16 Total: 42.82 kcal Atomic # 7 Polarization: -91.89 SS G_CDS: -1.76 Total: -93.64 kcal Atomic # 8 Polarization: -76.77 SS G_CDS: -0.25 Total: -77.01 kcal Atomic # 14 Polarization: 32.15 SS G_CDS: 2.03 Total: 34.18 kcal Total: -70.28 8.21 -62.07 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001147593587.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.701 kcal (2) G-P(sol) polarization free energy of solvation -70.281 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.580 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.207 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.074 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.373 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds