Wall clock time and date at job start Tue Mar 31 2020 22:53:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09003 * 109.47297 * 2 1 4 4 C 1.52997 * 109.47192 * 119.99586 * 2 1 3 5 5 C 1.52998 * 109.47231 * 185.00203 * 4 2 1 6 6 C 1.53006 * 109.47578 * 180.02562 * 5 4 2 7 7 C 1.52998 * 109.47578 * 180.02562 * 6 5 4 8 8 N 1.46903 * 109.47184 * 179.97438 * 7 6 5 9 9 C 1.46892 * 110.99841 * 179.97438 * 8 7 6 10 10 C 1.50696 * 109.47159 * 180.02562 * 9 8 7 11 11 O 1.21287 * 120.00062 * 359.97438 * 10 9 8 12 12 N 1.34774 * 120.00467 * 179.97438 * 10 9 8 13 13 C 1.37095 * 120.00560 * 179.97438 * 12 10 9 14 14 H 1.07999 * 119.99665 * 0.02562 * 13 12 10 15 15 C 1.38950 * 120.00452 * 179.97438 * 13 12 10 16 16 N 1.31416 * 119.99696 * 0.02562 * 15 13 12 17 17 Si 1.86796 * 120.00098 * 180.02562 * 15 13 12 18 18 H 1.48496 * 109.47251 * 90.00414 * 17 15 13 19 19 H 1.48503 * 109.46886 * 210.00066 * 17 15 13 20 20 H 1.48496 * 109.47046 * 330.00110 * 17 15 13 21 21 N 1.46497 * 109.47455 * 239.99524 * 2 1 3 22 22 C 1.34781 * 120.00077 * 84.99798 * 21 2 1 23 23 O 1.21504 * 119.99636 * 0.02562 * 22 21 2 24 24 C 1.48272 * 120.00115 * 180.02562 * 22 21 2 25 25 C 1.47494 * 128.71066 * 179.69744 * 24 22 21 26 26 N 1.30646 * 102.71618 * 180.26186 * 25 24 22 27 27 O 1.20840 * 109.61940 * 0.02562 * 26 25 24 28 28 N 1.20898 * 115.90905 * 0.02562 * 27 26 25 29 29 H 1.09005 * 109.47378 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.47345 * 299.99998 * 1 2 3 31 31 H 1.08993 * 109.47172 * 60.00532 * 1 2 3 32 32 H 1.08999 * 109.47294 * 304.99946 * 4 2 1 33 33 H 1.09002 * 109.47404 * 65.00229 * 4 2 1 34 34 H 1.09005 * 109.47299 * 299.99643 * 5 4 2 35 35 H 1.08998 * 109.47621 * 59.99795 * 5 4 2 36 36 H 1.09005 * 109.46313 * 300.00001 * 6 5 4 37 37 H 1.08998 * 109.47012 * 59.99177 * 6 5 4 38 38 H 1.08999 * 109.46772 * 299.99817 * 7 6 5 39 39 H 1.09002 * 109.46905 * 59.99474 * 7 6 5 40 40 H 1.00894 * 110.99901 * 56.04152 * 8 7 6 41 41 H 1.09005 * 109.47448 * 300.00080 * 9 8 7 42 42 H 1.09006 * 109.47577 * 59.99592 * 9 8 7 43 43 H 0.97005 * 119.99682 * 0.02562 * 12 10 9 44 44 H 0.97001 * 119.99685 * 180.02562 * 16 15 13 45 45 H 0.97000 * 120.00162 * 265.00206 * 21 2 1 46 46 H 1.07998 * 128.64014 * 0.25956 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 1.2493 5 6 3.5648 -0.6131 1.3137 6 6 4.0749 -1.3348 2.5627 7 6 5.5997 -1.2263 2.6275 8 7 6.0894 -1.9187 3.8270 9 6 7.5528 -1.8356 3.9222 10 6 8.0173 -2.5559 5.1617 11 8 7.2087 -3.0859 5.8940 12 7 9.3312 -2.6112 5.4566 13 6 9.7538 -3.2660 6.5845 14 1 9.0337 -3.7379 7.2366 15 6 11.1085 -3.3235 6.8882 16 7 11.9847 -2.7496 6.0945 17 14 11.6841 -4.2163 8.4247 18 1 11.9507 -5.6404 8.0991 19 1 12.9290 -3.5823 8.9284 20 1 10.6305 -4.1359 9.4680 21 7 2.0183 -0.6907 -1.1961 22 6 2.1471 -0.0184 -2.3571 23 8 1.8585 1.1606 -2.4117 24 6 2.6409 -0.7176 -3.5678 25 6 2.8480 -0.1778 -4.9247 26 7 3.2833 -1.2179 -5.5846 27 8 3.3398 -2.1726 -4.8459 28 7 2.9975 -1.9772 -3.7031 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5137 -0.8900 32 1 1.6054 -0.2616 2.1370 33 1 1.7517 -1.7714 1.2057 34 1 3.9995 -1.0728 0.4260 35 1 3.8532 0.4371 1.3573 36 1 3.6402 -0.8756 3.4506 37 1 3.7865 -2.3851 2.5187 38 1 6.0346 -1.6852 1.7396 39 1 5.8876 -0.1759 2.6717 40 1 5.7803 -2.8790 3.8416 41 1 8.0011 -2.2994 3.0435 42 1 7.8548 -0.7895 3.9747 43 1 9.9780 -2.1870 4.8711 44 1 12.9304 -2.7901 6.3063 45 1 2.2490 -1.6318 -1.1524 46 1 2.6812 0.8271 -5.2835 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001175795705.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:53:35 Heat of formation + Delta-G solvation = 27.011067 kcal Electronic energy + Delta-G solvation = -27607.137387 eV Core-core repulsion = 23343.691640 eV Total energy + Delta-G solvation = -4263.445747 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -47.47659 -40.49390 -38.33174 -37.47366 -35.99197 -35.34634 -35.04364 -34.00644 -33.40993 -31.54067 -31.17982 -28.73097 -26.76733 -26.18020 -24.68816 -24.26061 -22.88780 -21.81323 -21.29468 -21.12124 -19.58648 -19.21094 -19.08662 -18.17399 -17.87276 -16.96889 -16.24434 -15.84344 -15.73191 -15.49772 -14.99178 -14.66486 -14.58453 -14.53281 -14.27853 -13.80996 -13.55271 -13.36740 -13.29709 -13.22672 -12.68702 -12.48681 -12.32361 -12.23824 -11.94030 -11.86660 -11.60871 -11.50371 -11.42987 -11.34961 -11.23020 -11.04002 -10.96637 -10.88765 -10.71085 -10.39168 -10.21428 -9.76334 -9.50766 -8.45678 -8.04779 -7.95448 -6.41459 -3.82311 0.16135 0.76845 2.03953 2.34736 2.83121 2.92356 3.18006 3.26566 3.32734 3.36095 3.91191 3.99039 4.15457 4.19625 4.25956 4.45143 4.50950 4.61516 4.77291 4.86536 4.95165 5.08676 5.13151 5.21409 5.22765 5.26649 5.42526 5.43930 5.53815 5.58208 5.69172 5.71382 5.79718 5.82739 5.87737 5.99619 6.13195 6.18893 6.28894 6.70902 7.23988 7.35360 7.55449 7.68174 7.83216 8.06743 8.61691 9.18126 9.54709 10.06241 10.76322 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.015804 B = 0.001520 C = 0.001422 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1771.244501 B =18411.201910 C =19686.273709 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.140 3.860 3 H 0.095 0.905 4 C -0.128 4.128 5 C -0.119 4.119 6 C -0.117 4.117 7 C 0.059 3.941 8 N -0.670 5.670 9 C 0.050 3.950 10 C 0.441 3.559 11 O -0.584 6.584 12 N -0.564 5.564 13 C -0.300 4.300 14 H 0.103 0.897 15 C 0.021 3.979 16 N -0.902 5.902 17 Si 0.931 3.069 18 H -0.278 1.278 19 H -0.284 1.284 20 H -0.269 1.269 21 N -0.702 5.702 22 C 0.608 3.392 23 O -0.512 6.512 24 C -0.044 4.044 25 C 0.038 3.962 26 N -0.351 5.351 27 O 0.345 5.655 28 N -0.319 5.319 29 H 0.059 0.941 30 H 0.072 0.928 31 H 0.061 0.939 32 H 0.087 0.913 33 H 0.071 0.929 34 H 0.059 0.941 35 H 0.066 0.934 36 H 0.074 0.926 37 H 0.061 0.939 38 H 0.023 0.977 39 H 0.069 0.931 40 H 0.348 0.652 41 H 0.042 0.958 42 H 0.085 0.915 43 H 0.392 0.608 44 H 0.271 0.729 45 H 0.408 0.592 46 H 0.228 0.772 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.125 6.316 -21.921 31.092 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.037 3.963 3 H 0.114 0.886 4 C -0.166 4.166 5 C -0.157 4.157 6 C -0.155 4.155 7 C -0.071 4.071 8 N -0.303 5.303 9 C -0.082 4.082 10 C 0.226 3.774 11 O -0.468 6.468 12 N -0.201 5.201 13 C -0.429 4.429 14 H 0.121 0.879 15 C -0.180 4.180 16 N -0.543 5.543 17 Si 0.758 3.242 18 H -0.204 1.204 19 H -0.209 1.209 20 H -0.194 1.194 21 N -0.354 5.354 22 C 0.390 3.610 23 O -0.386 6.386 24 C -0.210 4.210 25 C -0.148 4.148 26 N -0.074 5.074 27 O 0.118 5.882 28 N -0.039 5.039 29 H 0.078 0.922 30 H 0.091 0.909 31 H 0.080 0.920 32 H 0.105 0.895 33 H 0.090 0.910 34 H 0.078 0.922 35 H 0.084 0.916 36 H 0.092 0.908 37 H 0.080 0.920 38 H 0.042 0.958 39 H 0.087 0.913 40 H 0.167 0.833 41 H 0.060 0.940 42 H 0.103 0.897 43 H 0.225 0.775 44 H 0.081 0.919 45 H 0.244 0.756 46 H 0.244 0.756 Dipole moment (debyes) X Y Z Total from point charges -21.416 6.293 -21.304 30.857 hybrid contribution 1.003 -0.335 -0.150 1.068 sum -20.413 5.958 -21.455 30.208 Atomic orbital electron populations 1.22195 0.94626 1.02536 1.03003 1.21215 0.94319 0.97802 0.82973 0.88650 1.21944 0.96531 1.01307 0.96779 1.21577 0.94441 1.01337 0.98356 1.21549 0.95189 1.00779 0.97942 1.21974 0.94774 0.99495 0.90860 1.60079 1.09713 1.21715 1.38749 1.21669 0.88502 1.01227 0.96833 1.19823 0.83328 0.85901 0.88337 1.90516 1.53351 1.50585 1.52328 1.41870 1.05423 1.48916 1.23871 1.19711 0.91982 1.30194 1.01030 0.87911 1.25272 0.95624 0.97832 0.99275 1.69618 1.02501 1.44260 1.37966 0.85844 0.78130 0.79058 0.81176 1.20434 1.20919 1.19398 1.45994 1.65777 1.14607 1.09043 1.16451 0.78036 0.85648 0.80906 1.90861 1.49523 1.14229 1.83939 1.26280 1.06352 0.90109 0.98240 1.27780 0.97810 1.01374 0.87835 1.75113 1.16581 0.96322 1.19382 1.85114 1.58997 1.32399 1.11721 1.75397 1.10385 1.17210 1.00923 0.92183 0.90907 0.92020 0.89496 0.90997 0.92183 0.91567 0.90755 0.91995 0.95843 0.91264 0.83280 0.93990 0.89667 0.77460 0.91880 0.75601 0.75551 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.88 9.48 37.15 0.35 -0.53 16 2 C 0.14 0.83 2.57 -67.94 -0.17 0.65 16 3 H 0.10 0.68 7.58 -51.93 -0.39 0.29 16 4 C -0.13 -0.69 4.75 -26.73 -0.13 -0.82 16 5 C -0.12 -0.85 5.10 -26.73 -0.14 -0.99 16 6 C -0.12 -1.10 5.47 -26.73 -0.15 -1.25 16 7 C 0.06 0.71 5.69 -3.82 -0.02 0.68 16 8 N -0.67 -10.95 6.13 -115.06 -0.70 -11.65 16 9 C 0.05 0.91 6.17 -4.98 -0.03 0.88 16 10 C 0.44 10.58 7.82 -10.99 -0.09 10.49 16 11 O -0.58 -16.06 15.78 5.55 0.09 -15.97 16 12 N -0.56 -14.49 5.29 -10.97 -0.06 -14.55 16 13 C -0.30 -8.44 9.68 -14.93 -0.14 -8.59 16 14 H 0.10 3.03 7.16 -52.49 -0.38 2.66 16 15 C 0.02 0.58 5.50 -17.47 -0.10 0.48 16 16 N -0.90 -24.70 13.05 55.50 0.72 -23.98 16 17 Si 0.93 21.15 29.55 -169.99 -5.02 16.13 16 18 H -0.28 -6.24 7.11 56.52 0.40 -5.83 16 19 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 20 H -0.27 -6.12 7.11 56.52 0.40 -5.71 16 21 N -0.70 -4.34 4.53 -54.62 -0.25 -4.59 16 22 C 0.61 4.80 7.81 -12.13 -0.09 4.71 16 23 O -0.51 -5.33 16.71 5.36 0.09 -5.24 16 24 C -0.04 -0.31 7.56 -80.07 -0.61 -0.92 16 25 C 0.04 0.22 12.63 -14.29 -0.18 0.04 16 26 N -0.35 -2.48 12.22 30.72 0.38 -2.11 16 27 O 0.34 2.50 11.65 27.27 0.32 2.82 16 28 N -0.32 -2.33 12.13 33.49 0.41 -1.92 16 29 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 30 H 0.07 0.33 8.14 -51.93 -0.42 -0.10 16 31 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 34 H 0.06 0.43 7.75 -51.93 -0.40 0.03 16 35 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 36 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 37 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 38 H 0.02 0.27 8.14 -51.93 -0.42 -0.15 16 39 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 40 H 0.35 5.82 8.43 -39.29 -0.33 5.49 16 41 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 42 H 0.09 1.43 8.14 -51.93 -0.42 1.01 16 43 H 0.39 9.62 7.90 -40.82 -0.32 9.29 16 44 H 0.27 7.02 8.31 -40.82 -0.34 6.68 16 45 H 0.41 2.08 8.46 -40.82 -0.35 1.74 16 46 H 0.23 0.63 8.06 -52.49 -0.42 0.20 16 LS Contribution 399.94 15.07 6.03 6.03 Total: -1.00 -33.18 399.94 -6.30 -39.48 By element: Atomic # 1 Polarization: 17.53 SS G_CDS: -6.80 Total: 10.73 kcal Atomic # 6 Polarization: 6.33 SS G_CDS: -1.49 Total: 4.84 kcal Atomic # 7 Polarization: -59.29 SS G_CDS: 0.50 Total: -58.80 kcal Atomic # 8 Polarization: -18.90 SS G_CDS: 0.49 Total: -18.40 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.13 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -33.18 -6.30 -39.48 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001175795705.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.487 kcal (2) G-P(sol) polarization free energy of solvation -33.176 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.311 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.300 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.476 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.011 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds